Wall clock time and date at job start Mon Mar 30 2020 06:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46738 * 2 1 4 4 N 1.46494 * 109.47015 * 119.99954 * 2 1 3 5 5 C 1.34774 * 120.00248 * 274.99794 * 4 2 1 6 6 O 1.21282 * 119.99771 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00105 * 180.02562 * 5 4 2 8 8 C 1.53003 * 109.47267 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47333 * 179.97438 * 8 7 5 10 10 C 1.52992 * 109.47029 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47009 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99901 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00126 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99860 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00274 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47034 * 59.99653 * 15 13 11 17 17 H 1.48496 * 109.47558 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47009 * 300.00040 * 15 13 11 19 19 C 1.50703 * 109.47260 * 240.00372 * 2 1 3 20 20 C 1.39872 * 126.03848 * 280.02312 * 19 2 1 21 21 N 1.30838 * 108.20312 * 179.97438 * 20 19 2 22 22 N 1.40088 * 108.20068 * 359.77854 * 21 20 19 23 23 H 0.97004 * 126.03142 * 180.23152 * 22 21 20 24 24 C 1.34940 * 107.93023 * 0.36844 * 22 21 20 25 25 H 1.09004 * 109.47198 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47035 * 300.00081 * 1 2 3 27 27 H 1.09004 * 109.46736 * 59.99934 * 1 2 3 28 28 H 0.96999 * 119.99509 * 95.00650 * 4 2 1 29 29 H 1.08996 * 109.47371 * 300.00511 * 7 5 4 30 30 H 1.08996 * 109.47361 * 60.00389 * 7 5 4 31 31 H 1.08996 * 109.47158 * 300.00416 * 8 7 5 32 32 H 1.09001 * 109.47145 * 60.00097 * 8 7 5 33 33 H 1.09001 * 109.47049 * 300.00230 * 9 8 7 34 34 H 1.09001 * 109.46786 * 60.00048 * 9 8 7 35 35 H 1.09001 * 109.47304 * 299.99964 * 10 9 8 36 36 H 1.09001 * 109.47386 * 60.00307 * 10 9 8 37 37 H 0.96996 * 119.99952 * 179.97438 * 14 13 11 38 38 H 1.08001 * 125.89461 * 0.02562 * 20 19 2 39 39 H 1.08002 * 126.13053 * 179.90865 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8582 1.1584 2.4116 7 6 2.6499 -0.7285 3.5874 8 6 2.7007 0.2544 4.7588 9 6 3.2106 -0.4669 6.0081 10 6 3.2608 0.5158 7.1796 11 6 3.7637 -0.1945 8.4099 12 1 4.0213 -1.2421 8.3612 13 6 3.8939 0.4929 9.5980 14 7 3.5797 1.7687 9.6574 15 14 4.5165 -0.3876 11.1232 16 1 5.8785 -0.9204 10.8658 17 1 4.5654 0.5662 12.2603 18 1 3.6012 -1.5087 11.4559 19 6 2.0324 -0.7103 -1.2305 20 6 2.1211 -2.0956 -1.4024 21 7 2.6015 -2.3293 -2.5968 22 7 2.8293 -1.0983 -3.2254 23 1 3.1804 -0.9710 -4.1207 24 6 2.4768 -0.1207 -2.3645 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.2490 -1.6317 1.1525 29 1 1.9778 -1.5509 3.8324 30 1 3.6492 -1.1203 3.3978 31 1 3.3726 1.0770 4.5140 32 1 1.7012 0.6458 4.9483 33 1 2.5383 -1.2893 6.2527 34 1 4.2101 -0.8587 5.8189 35 1 3.9329 1.3385 6.9352 36 1 2.2612 0.9072 7.3686 37 1 3.6710 2.2522 10.4933 38 1 1.8406 -2.8432 -0.6752 39 1 2.5346 0.9418 -2.5492 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588657629.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:32 Heat of formation + Delta-G solvation = 7.463756 kcal Electronic energy + Delta-G solvation = -18937.934596 eV Core-core repulsion = 15881.158798 eV Total energy + Delta-G solvation = -3056.775797 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.67745 -39.60540 -35.89471 -34.74638 -32.63271 -31.86615 -31.57402 -29.61753 -28.84691 -25.68600 -23.70669 -22.59125 -22.07747 -20.36042 -20.05336 -19.88586 -18.35211 -16.72672 -16.15342 -15.78641 -15.54413 -15.05754 -14.85160 -14.43141 -14.11443 -14.00508 -13.69110 -13.16857 -12.90523 -12.58152 -12.20026 -12.08415 -11.77165 -11.62716 -11.53901 -10.93521 -10.87354 -10.50612 -10.47105 -10.35728 -10.09512 -9.75326 -9.56279 -9.23072 -9.16100 -8.96962 -8.88133 -8.26937 -5.91962 -3.94361 1.45555 2.29542 2.46782 2.81636 3.25921 3.37675 3.41907 3.44295 4.27877 4.47383 4.51749 4.81959 4.98423 5.05964 5.11573 5.23987 5.38771 5.41476 5.42995 5.46140 5.61979 5.81961 5.96498 6.02078 6.17537 6.20205 6.36527 6.45848 6.61124 6.80799 6.89804 7.07843 7.19953 7.25038 7.53290 7.77696 7.94518 8.09892 8.35209 8.51662 9.13284 9.69016 11.19365 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.047727 B = 0.002599 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.529258 B =10770.214681 C =11055.914245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.220 3.780 3 H 0.091 0.909 4 N -0.731 5.731 5 C 0.514 3.486 6 O -0.536 6.536 7 C -0.139 4.139 8 C -0.103 4.103 9 C -0.110 4.110 10 C 0.020 3.980 11 C -0.520 4.520 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.244 4.244 20 C 0.060 3.940 21 N -0.293 5.293 22 N -0.476 5.476 23 H 0.440 0.560 24 C 0.073 3.927 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.398 0.602 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.015 0.985 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.183 0.817 39 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.888 -6.203 -26.705 27.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.115 3.885 3 H 0.109 0.891 4 N -0.384 5.384 5 C 0.301 3.699 6 O -0.412 6.412 7 C -0.179 4.179 8 C -0.141 4.141 9 C -0.148 4.148 10 C -0.017 4.017 11 C -0.559 4.559 12 H 0.072 0.928 13 C -0.146 4.146 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.257 4.257 20 C -0.128 4.128 21 N -0.115 5.115 22 N -0.184 5.184 23 H 0.284 0.716 24 C -0.076 4.076 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.232 0.768 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.200 0.800 39 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -3.762 -6.080 -27.362 28.281 hybrid contribution 0.397 -0.202 0.919 1.021 sum -3.365 -6.282 -26.443 27.386 Atomic orbital electron populations 1.22155 0.94746 1.02178 1.02416 1.18971 0.93390 0.95946 0.80231 0.89098 1.46172 1.68682 1.14002 1.09547 1.21071 0.76795 0.87474 0.84512 1.90697 1.49364 1.16207 1.84952 1.21795 1.02483 1.00459 0.93193 1.21444 1.02428 0.97246 0.92974 1.21649 0.99161 0.99241 0.94756 1.19092 0.97198 0.94142 0.91290 1.21256 1.43571 0.96310 0.94714 0.92821 1.25043 0.95714 0.94874 0.98955 1.69966 1.48787 1.08200 1.26570 0.86673 0.79379 0.79385 0.82624 1.20306 1.21346 1.20289 1.20202 1.13784 0.93590 0.98074 1.23729 0.98446 0.95825 0.94758 1.77367 1.21917 1.03267 1.08953 1.46328 1.52330 1.03883 1.15876 0.71564 1.22390 0.98677 0.95714 0.90798 0.92476 0.91679 0.91950 0.76825 0.89160 0.89218 0.91852 0.91815 0.93496 0.93520 0.96613 0.96593 0.93011 0.80028 0.80353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 9.47 37.16 0.35 -1.02 16 2 C 0.22 2.01 3.00 -69.08 -0.21 1.80 16 3 H 0.09 0.96 7.57 -51.93 -0.39 0.57 16 4 N -0.73 -7.15 5.06 -54.94 -0.28 -7.43 16 5 C 0.51 6.98 7.79 -10.99 -0.09 6.89 16 6 O -0.54 -9.49 15.65 5.56 0.09 -9.40 16 7 C -0.14 -1.84 5.70 -27.88 -0.16 -2.00 16 8 C -0.10 -1.85 4.50 -26.73 -0.12 -1.97 16 9 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 10 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 11 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 12 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 13 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.72 13.29 55.43 0.74 -26.98 16 15 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C -0.24 -1.90 5.09 -105.05 -0.53 -2.44 16 20 C 0.06 0.47 11.20 -17.36 -0.19 0.28 16 21 N -0.29 -2.66 12.70 30.63 0.39 -2.27 16 22 N -0.48 -3.03 7.36 30.44 0.22 -2.81 16 23 H 0.44 1.43 8.96 -182.60 -1.64 -0.21 16 24 C 0.07 0.45 11.90 -17.23 -0.20 0.25 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.40 2.88 7.63 -40.82 -0.31 2.57 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 32 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.18 1.01 7.72 -52.49 -0.41 0.60 16 39 H 0.18 0.58 8.06 -52.49 -0.42 0.16 16 LS Contribution 333.73 15.07 5.03 5.03 Total: -1.00 -35.93 333.73 -8.03 -43.97 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -7.36 Total: -2.99 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -1.84 Total: -14.14 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 1.07 Total: -39.49 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.93 -8.03 -43.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588657629.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.431 kcal (2) G-P(sol) polarization free energy of solvation -35.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds