Wall clock time and date at job start Mon Mar 30 2020 06:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46738 * 2 1 4 4 N 1.46494 * 109.47015 * 119.99954 * 2 1 3 5 5 C 1.34774 * 120.00248 * 274.99794 * 4 2 1 6 6 O 1.21282 * 119.99771 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00105 * 180.02562 * 5 4 2 8 8 C 1.53003 * 109.47267 * 180.02562 * 7 5 4 9 9 C 1.53003 * 109.47333 * 179.97438 * 8 7 5 10 10 C 1.52992 * 109.47029 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.47009 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99901 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00126 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99860 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00274 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47034 * 59.99653 * 15 13 11 17 17 H 1.48496 * 109.47558 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47009 * 300.00040 * 15 13 11 19 19 C 1.50703 * 109.47260 * 240.00372 * 2 1 3 20 20 C 1.39872 * 126.03848 * 280.02312 * 19 2 1 21 21 N 1.30838 * 108.20312 * 179.97438 * 20 19 2 22 22 N 1.40088 * 108.20068 * 359.77854 * 21 20 19 23 23 H 0.97004 * 126.03142 * 180.23152 * 22 21 20 24 24 C 1.34940 * 107.93023 * 0.36844 * 22 21 20 25 25 H 1.09004 * 109.47198 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47035 * 300.00081 * 1 2 3 27 27 H 1.09004 * 109.46736 * 59.99934 * 1 2 3 28 28 H 0.96999 * 119.99509 * 95.00650 * 4 2 1 29 29 H 1.08996 * 109.47371 * 300.00511 * 7 5 4 30 30 H 1.08996 * 109.47361 * 60.00389 * 7 5 4 31 31 H 1.08996 * 109.47158 * 300.00416 * 8 7 5 32 32 H 1.09001 * 109.47145 * 60.00097 * 8 7 5 33 33 H 1.09001 * 109.47049 * 300.00230 * 9 8 7 34 34 H 1.09001 * 109.46786 * 60.00048 * 9 8 7 35 35 H 1.09001 * 109.47304 * 299.99964 * 10 9 8 36 36 H 1.09001 * 109.47386 * 60.00307 * 10 9 8 37 37 H 0.96996 * 119.99952 * 179.97438 * 14 13 11 38 38 H 1.08001 * 125.89461 * 0.02562 * 20 19 2 39 39 H 1.08002 * 126.13053 * 179.90865 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1470 -0.0183 2.3571 6 8 1.8582 1.1584 2.4116 7 6 2.6499 -0.7285 3.5874 8 6 2.7007 0.2544 4.7588 9 6 3.2106 -0.4669 6.0081 10 6 3.2608 0.5158 7.1796 11 6 3.7637 -0.1945 8.4099 12 1 4.0213 -1.2421 8.3612 13 6 3.8939 0.4929 9.5980 14 7 3.5797 1.7687 9.6574 15 14 4.5165 -0.3876 11.1232 16 1 5.8785 -0.9204 10.8658 17 1 4.5654 0.5662 12.2603 18 1 3.6012 -1.5087 11.4559 19 6 2.0324 -0.7103 -1.2305 20 6 2.1211 -2.0956 -1.4024 21 7 2.6015 -2.3293 -2.5968 22 7 2.8293 -1.0983 -3.2254 23 1 3.1804 -0.9710 -4.1207 24 6 2.4768 -0.1207 -2.3645 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.2490 -1.6317 1.1525 29 1 1.9778 -1.5509 3.8324 30 1 3.6492 -1.1203 3.3978 31 1 3.3726 1.0770 4.5140 32 1 1.7012 0.6458 4.9483 33 1 2.5383 -1.2893 6.2527 34 1 4.2101 -0.8587 5.8189 35 1 3.9329 1.3385 6.9352 36 1 2.2612 0.9072 7.3686 37 1 3.6710 2.2522 10.4933 38 1 1.8406 -2.8432 -0.6752 39 1 2.5346 0.9418 -2.5492 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588657629.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:32 Heat of formation + Delta-G solvation = -17.898040 kcal Electronic energy + Delta-G solvation = -18939.034365 eV Core-core repulsion = 15881.158798 eV Total energy + Delta-G solvation = -3057.875567 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.23180 -40.64912 -36.94730 -36.32245 -34.57495 -32.75004 -32.24243 -31.14092 -29.59359 -27.43284 -24.86338 -23.51868 -23.15680 -21.71368 -21.02420 -20.91911 -18.96795 -18.38559 -17.73725 -16.83772 -16.60334 -16.41357 -15.73020 -15.41233 -15.35091 -14.84583 -14.73117 -14.47044 -14.01302 -13.68444 -13.56181 -13.38654 -13.26176 -12.88285 -12.76535 -12.46846 -12.35126 -12.11129 -12.07132 -11.49815 -11.33295 -11.31783 -11.13150 -10.71388 -10.62295 -10.52348 -10.08503 -9.50869 -8.16673 -6.28803 0.94521 1.41540 1.45668 1.53458 1.68775 1.78661 2.03902 2.39010 2.44589 3.15796 3.69382 3.93908 4.04476 4.11928 4.20519 4.29399 4.41822 4.45417 4.66357 4.70901 4.74153 4.79864 4.90530 4.92411 4.98946 5.13372 5.24552 5.32938 5.37214 5.41996 5.58378 5.60932 5.66467 5.81633 5.90834 6.27800 6.41316 6.66796 6.69017 6.89656 7.38327 7.40637 8.95397 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.047727 B = 0.002599 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.529258 B =10770.214681 C =11055.914245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.224 3.776 3 H 0.075 0.925 4 N -0.712 5.712 5 C 0.514 3.486 6 O -0.586 6.586 7 C -0.130 4.130 8 C -0.095 4.095 9 C -0.096 4.096 10 C 0.019 3.981 11 C -0.542 4.542 12 H 0.066 0.934 13 C -0.007 4.007 14 N -0.938 5.938 15 Si 0.969 3.031 16 H -0.265 1.265 17 H -0.285 1.285 18 H -0.264 1.264 19 C -0.261 4.261 20 C 0.057 3.943 21 N -0.328 5.328 22 N -0.470 5.470 23 H 0.453 0.547 24 C 0.084 3.916 25 H 0.066 0.934 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.413 0.587 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.059 0.941 35 H -0.016 1.016 36 H -0.015 1.015 37 H 0.263 0.737 38 H 0.200 0.800 39 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.337 -8.444 -27.607 29.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.119 3.881 3 H 0.093 0.907 4 N -0.364 5.364 5 C 0.302 3.698 6 O -0.466 6.466 7 C -0.169 4.169 8 C -0.134 4.134 9 C -0.134 4.134 10 C -0.019 4.019 11 C -0.580 4.580 12 H 0.084 0.916 13 C -0.204 4.204 14 N -0.579 5.579 15 Si 0.793 3.207 16 H -0.189 1.189 17 H -0.211 1.211 18 H -0.189 1.189 19 C -0.274 4.274 20 C -0.129 4.129 21 N -0.150 5.150 22 N -0.179 5.179 23 H 0.299 0.701 24 C -0.066 4.066 25 H 0.085 0.915 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.250 0.750 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.003 0.997 36 H 0.003 0.997 37 H 0.071 0.929 38 H 0.217 0.783 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -3.202 -8.384 -28.324 29.711 hybrid contribution 0.212 0.551 1.125 1.270 sum -2.990 -7.833 -27.199 28.462 Atomic orbital electron populations 1.22100 0.94450 1.02605 1.01798 1.18908 0.93545 0.95258 0.80403 0.90731 1.46005 1.67112 1.14623 1.08710 1.21097 0.76385 0.86831 0.85514 1.90689 1.51834 1.18340 1.85758 1.21674 1.04794 0.99507 0.90957 1.21238 1.00477 0.97675 0.93981 1.21450 1.00465 0.98038 0.93397 1.19057 0.94430 0.94644 0.93726 1.21738 1.43568 0.97041 0.95658 0.91607 1.26097 0.95763 0.95647 1.02928 1.70127 1.49951 1.10118 1.27662 0.85439 0.79294 0.78213 0.77719 1.18943 1.21086 1.18894 1.20083 1.15512 0.93704 0.98052 1.24053 0.97788 0.96262 0.94803 1.77324 1.23270 1.04741 1.09711 1.46370 1.51764 1.03277 1.16448 0.70086 1.22858 0.96743 0.96924 0.90071 0.91465 0.94180 0.90673 0.74972 0.86372 0.86644 0.93917 0.93809 0.92089 0.92192 0.99741 0.99690 0.92862 0.78305 0.77547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.47 71.98 0.68 -1.81 16 2 C 0.22 3.82 3.00 44.25 0.13 3.95 16 3 H 0.07 1.55 7.57 -2.39 -0.02 1.53 16 4 N -0.71 -12.71 5.06 -446.11 -2.26 -14.96 16 5 C 0.51 13.50 7.79 87.66 0.68 14.18 16 6 O -0.59 -21.18 15.65 -3.04 -0.05 -21.23 16 7 C -0.13 -3.17 5.70 29.85 0.17 -3.00 16 8 C -0.10 -3.46 4.50 30.60 0.14 -3.32 16 9 C -0.10 -3.95 5.15 30.59 0.16 -3.79 16 10 C 0.02 1.03 4.97 29.85 0.15 1.18 16 11 C -0.54 -31.67 9.11 25.60 0.23 -31.43 16 12 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 13 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 14 N -0.94 -59.42 13.29 21.45 0.28 -59.14 16 15 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 16 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 17 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 18 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 19 C -0.26 -3.56 5.09 -20.14 -0.10 -3.66 16 20 C 0.06 0.79 11.20 85.24 0.95 1.75 16 21 N -0.33 -5.37 12.70 -57.02 -0.72 -6.09 16 22 N -0.47 -5.02 7.36 -57.59 -0.42 -5.45 16 23 H 0.45 2.05 8.96 -213.32 -1.91 0.14 16 24 C 0.08 0.85 11.90 83.54 0.99 1.84 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.41 4.83 7.63 -92.71 -0.71 4.13 16 29 H 0.12 2.27 8.14 -2.39 -0.02 2.26 16 30 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 32 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 33 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 35 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 36 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 37 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 38 H 0.20 1.72 7.72 -2.91 -0.02 1.70 16 39 H 0.21 0.76 8.06 -2.91 -0.02 0.74 16 Total: -1.00 -80.08 333.73 1.94 -78.14 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -1.57 Total: 5.75 kcal Atomic # 6 Polarization: -28.73 SS G_CDS: 4.65 Total: -24.08 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -3.12 Total: -85.63 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.05 Total: -21.23 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -80.08 1.94 -78.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588657629.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.237 kcal (2) G-P(sol) polarization free energy of solvation -80.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds