Wall clock time and date at job start Mon Mar 30 2020 06:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 O 1.21273 * 120.00140 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99767 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00054 * 179.97438 * 15 13 12 17 17 H 1.09005 * 115.55715 * 9.33291 * 16 15 13 18 18 C 1.53086 * 117.51191 * 223.60826 * 16 15 13 19 19 C 1.52553 * 117.50875 * 155.10563 * 16 15 13 20 20 C 1.53870 * 120.82653 * 357.25839 * 19 16 15 21 21 C 1.54994 * 104.06087 * 192.35023 * 20 19 16 22 22 C 1.54920 * 102.82228 * 37.56597 * 21 20 19 23 23 C 1.53484 * 121.09164 * 217.87698 * 19 16 15 24 24 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 26 26 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 27 27 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 28 28 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 29 29 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 30 30 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 31 31 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 32 32 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 33 33 H 0.97005 * 119.99680 * 359.97438 * 15 13 12 34 34 H 1.09000 * 117.51150 * 359.97438 * 18 16 15 35 35 H 1.08997 * 117.50815 * 145.08867 * 18 16 15 36 36 H 1.09005 * 110.51171 * 310.99165 * 20 19 16 37 37 H 1.08991 * 110.51435 * 73.70745 * 20 19 16 38 38 H 1.09004 * 110.74079 * 279.23507 * 21 20 19 39 39 H 1.09002 * 110.89729 * 155.97176 * 21 20 19 40 40 H 1.08992 * 110.48374 * 203.59497 * 22 21 20 41 41 H 1.09009 * 110.59090 * 81.02134 * 22 21 20 42 42 H 1.08997 * 110.07382 * 263.32024 * 23 19 16 43 43 H 1.09001 * 110.06686 * 24.80087 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0018 13 6 1.7211 -7.4551 0.0018 14 8 0.5084 -7.4551 0.0018 15 7 2.3951 -8.6223 0.0029 16 6 1.6626 -9.8910 0.0034 17 1 0.5872 -9.8132 -0.1565 18 6 2.1601 -10.9943 0.9408 19 6 2.3735 -11.1153 -0.5650 20 6 3.7821 -10.9976 -1.1729 21 6 3.9921 -12.3496 -1.9012 22 6 2.5880 -12.6478 -2.4840 23 6 1.6124 -12.1614 -1.3908 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8905 28 1 2.8720 -3.6042 -0.8894 29 1 0.8534 -5.0451 -0.8886 30 1 0.8541 -5.0445 0.8914 31 1 3.1014 -6.0927 -0.8882 32 1 3.1013 -6.0918 0.8917 33 1 3.3651 -8.6222 0.0032 34 1 3.0326 -10.7763 1.5567 35 1 1.4120 -11.6426 1.3970 36 1 3.8242 -10.1711 -1.8823 37 1 4.5271 -10.8669 -0.3881 38 1 4.2902 -13.1256 -1.1962 39 1 4.7283 -12.2512 -2.6990 40 1 2.4657 -13.7171 -2.6560 41 1 2.4313 -12.0932 -3.4093 42 1 1.3161 -12.9962 -0.7556 43 1 0.7324 -11.7090 -1.8480 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588721866.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:40 Heat of formation + Delta-G solvation = -55.428344 kcal Electronic energy + Delta-G solvation = -19276.103865 eV Core-core repulsion = 16320.141205 eV Total energy + Delta-G solvation = -2955.962660 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.23780 -38.84436 -35.33908 -34.78657 -32.78668 -32.34771 -29.62549 -29.10393 -26.00795 -25.51629 -23.05071 -21.71420 -21.20962 -20.13431 -19.94633 -19.14311 -16.89736 -16.60349 -16.12178 -15.71421 -15.60802 -14.95997 -14.43736 -14.11725 -13.96464 -13.60940 -13.27781 -13.08908 -12.57684 -12.31693 -12.25499 -11.67289 -11.58224 -11.47481 -11.44686 -11.30471 -11.21593 -10.96555 -10.94766 -10.52045 -10.48958 -10.39037 -10.10402 -9.78789 -9.58878 -9.20122 -8.96263 -8.82185 -8.28755 -5.93546 -3.96020 2.64179 2.99386 3.35151 3.41103 3.44359 3.54462 4.14905 4.23320 4.45902 4.50358 4.54738 4.79860 4.82453 4.92344 5.08376 5.27687 5.32670 5.36141 5.38835 5.41939 5.44496 5.48339 5.57790 5.57993 5.68355 5.70636 5.80397 5.89970 5.91006 5.96646 6.16025 6.31863 6.38866 6.57418 6.86308 7.04350 7.22251 7.43492 7.76081 7.92305 8.08081 8.26698 8.49801 9.11747 9.67503 11.17813 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.047065 B = 0.002525 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.784993 B =11086.459884 C =11294.700700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.138 4.138 13 C 0.516 3.484 14 O -0.533 6.533 15 N -0.709 5.709 16 C 0.096 3.904 17 H 0.136 0.864 18 C -0.181 4.181 19 C -0.139 4.139 20 C -0.091 4.091 21 C -0.121 4.121 22 C -0.123 4.123 23 C -0.088 4.088 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.400 0.600 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.589 -27.214 -1.889 28.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.178 4.178 13 C 0.304 3.696 14 O -0.409 6.409 15 N -0.360 5.360 16 C -0.010 4.010 17 H 0.153 0.847 18 C -0.219 4.219 19 C -0.140 4.140 20 C -0.129 4.129 21 C -0.159 4.159 22 C -0.161 4.161 23 C -0.126 4.126 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.234 0.766 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.536 -27.050 -1.888 28.143 hybrid contribution 0.950 0.868 0.079 1.289 sum 8.486 -26.182 -1.808 27.582 Atomic orbital electron populations 1.69978 1.06044 1.26492 1.50972 1.25048 0.94846 0.99232 0.95492 0.86608 0.79815 0.83604 0.78037 1.20715 1.21262 1.19933 1.21285 0.92973 0.91208 1.50343 0.92767 1.19097 0.94072 0.91270 0.97325 1.21647 0.99075 0.93996 1.00061 1.21455 0.97014 0.92670 1.02997 1.21801 1.00123 0.91865 1.04022 1.21133 0.88488 0.85394 0.74614 1.90697 1.14267 1.87552 1.48346 1.45491 1.09760 1.04605 1.76108 1.21670 0.97136 0.79528 1.02670 0.84672 1.23592 1.03795 1.02450 0.92110 1.22322 0.97410 0.99005 0.95263 1.21859 0.93642 0.98125 0.99263 1.22450 0.97009 0.96925 0.99479 1.22349 0.94757 1.00808 0.98182 1.21646 0.97827 0.96752 0.96355 0.93053 0.96592 0.96572 0.93482 0.93478 0.91776 0.91775 0.89098 0.89085 0.76567 0.88495 0.88089 0.90929 0.91597 0.91457 0.91489 0.91618 0.91491 0.91396 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.29 55.43 0.74 -27.01 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.02 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.11 -2.29 5.15 -26.74 -0.14 -2.43 16 11 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 12 C -0.14 -1.86 5.70 -27.88 -0.16 -2.01 16 13 C 0.52 7.32 7.83 -10.98 -0.09 7.24 16 14 O -0.53 -9.88 15.55 5.56 0.09 -9.79 16 15 N -0.71 -7.45 5.39 -53.99 -0.29 -7.74 16 16 C 0.10 0.97 6.29 -68.12 -0.43 0.54 16 17 H 0.14 1.62 7.40 -51.93 -0.38 1.24 16 18 C -0.18 -1.43 10.16 -26.91 -0.27 -1.70 16 19 C -0.14 -1.08 2.46 -154.25 -0.38 -1.46 16 20 C -0.09 -0.62 5.74 -25.23 -0.14 -0.77 16 21 C -0.12 -0.73 6.91 -24.67 -0.17 -0.90 16 22 C -0.12 -0.78 6.84 -24.99 -0.17 -0.95 16 23 C -0.09 -0.63 6.55 -25.75 -0.17 -0.80 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.40 3.12 8.16 -40.82 -0.33 2.78 16 34 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 350.81 15.07 5.29 5.29 Total: -1.00 -33.39 350.81 -9.85 -43.24 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -7.86 Total: -2.24 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -2.79 Total: -18.77 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.45 Total: -34.74 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.39 -9.85 -43.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588721866.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.188 kcal (2) G-P(sol) polarization free energy of solvation -33.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds