Wall clock time and date at job start Mon Mar 30 2020 06:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46735 * 180.02562 * 12 11 10 14 14 O 1.21273 * 120.00140 * 359.97438 * 13 12 11 15 15 N 1.34779 * 119.99767 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00054 * 179.97438 * 15 13 12 17 17 H 1.09005 * 115.55715 * 9.33291 * 16 15 13 18 18 C 1.53086 * 117.51191 * 223.60826 * 16 15 13 19 19 C 1.52553 * 117.50875 * 155.10563 * 16 15 13 20 20 C 1.53870 * 120.82653 * 357.25839 * 19 16 15 21 21 C 1.54994 * 104.06087 * 192.35023 * 20 19 16 22 22 C 1.54920 * 102.82228 * 37.56597 * 21 20 19 23 23 C 1.53484 * 121.09164 * 217.87698 * 19 16 15 24 24 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 26 26 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 27 27 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 28 28 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 29 29 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 30 30 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 31 31 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 32 32 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 33 33 H 0.97005 * 119.99680 * 359.97438 * 15 13 12 34 34 H 1.09000 * 117.51150 * 359.97438 * 18 16 15 35 35 H 1.08997 * 117.50815 * 145.08867 * 18 16 15 36 36 H 1.09005 * 110.51171 * 310.99165 * 20 19 16 37 37 H 1.08991 * 110.51435 * 73.70745 * 20 19 16 38 38 H 1.09004 * 110.74079 * 279.23507 * 21 20 19 39 39 H 1.09002 * 110.89729 * 155.97176 * 21 20 19 40 40 H 1.08992 * 110.48374 * 203.59497 * 22 21 20 41 41 H 1.09009 * 110.59090 * 81.02134 * 22 21 20 42 42 H 1.08997 * 110.07382 * 263.32024 * 23 19 16 43 43 H 1.09001 * 110.06686 * 24.80087 * 23 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4747 -6.1500 0.0018 13 6 1.7211 -7.4551 0.0018 14 8 0.5084 -7.4551 0.0018 15 7 2.3951 -8.6223 0.0029 16 6 1.6626 -9.8910 0.0034 17 1 0.5872 -9.8132 -0.1565 18 6 2.1601 -10.9943 0.9408 19 6 2.3735 -11.1153 -0.5650 20 6 3.7821 -10.9976 -1.1729 21 6 3.9921 -12.3496 -1.9012 22 6 2.5880 -12.6478 -2.4840 23 6 1.6124 -12.1614 -1.3908 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8905 28 1 2.8720 -3.6042 -0.8894 29 1 0.8534 -5.0451 -0.8886 30 1 0.8541 -5.0445 0.8914 31 1 3.1014 -6.0927 -0.8882 32 1 3.1013 -6.0918 0.8917 33 1 3.3651 -8.6222 0.0032 34 1 3.0326 -10.7763 1.5567 35 1 1.4120 -11.6426 1.3970 36 1 3.8242 -10.1711 -1.8823 37 1 4.5271 -10.8669 -0.3881 38 1 4.2902 -13.1256 -1.1962 39 1 4.7283 -12.2512 -2.6990 40 1 2.4657 -13.7171 -2.6560 41 1 2.4313 -12.0932 -3.4093 42 1 1.3161 -12.9962 -0.7556 43 1 0.7324 -11.7090 -1.8480 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588721866.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:39 Heat of formation + Delta-G solvation = -75.159921 kcal Electronic energy + Delta-G solvation = -19276.959490 eV Core-core repulsion = 16320.141205 eV Total energy + Delta-G solvation = -2956.818285 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.13293 -39.73464 -36.67805 -35.95379 -34.61708 -33.44675 -31.33296 -29.64400 -27.59015 -26.31976 -24.58932 -22.82185 -21.98568 -21.62983 -21.04107 -19.79964 -18.42140 -17.93325 -17.36605 -16.86803 -16.50443 -16.27774 -15.68677 -15.50565 -15.00924 -14.54390 -14.30660 -14.04043 -13.81603 -13.61813 -13.57534 -13.24543 -12.95786 -12.82378 -12.33974 -12.16817 -12.15594 -12.08754 -11.97980 -11.94536 -11.80567 -11.43266 -11.37514 -11.35728 -11.16871 -10.91535 -10.62440 -10.54890 -9.67157 -8.18531 -6.30810 1.40460 1.42925 1.54008 1.57343 2.08297 2.42228 2.84448 3.14104 3.55323 3.61350 3.76772 3.86949 3.93588 4.05065 4.15175 4.27767 4.31998 4.55436 4.60368 4.68602 4.74266 4.81100 4.83456 4.83712 4.88417 4.92348 5.01198 5.03078 5.07921 5.19030 5.21816 5.27175 5.33555 5.35845 5.37644 5.47659 5.53081 5.57957 5.78270 5.88295 6.25406 6.53139 6.87773 7.25935 7.38820 8.93816 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.047065 B = 0.002525 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.784993 B =11086.459884 C =11294.700700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.095 4.095 11 C -0.096 4.096 12 C -0.127 4.127 13 C 0.514 3.486 14 O -0.589 6.589 15 N -0.688 5.688 16 C 0.065 3.935 17 H 0.107 0.893 18 C -0.166 4.166 19 C -0.125 4.125 20 C -0.093 4.093 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.093 4.093 24 H 0.263 0.737 25 H -0.016 1.016 26 H -0.016 1.016 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.417 0.583 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.859 -28.148 -1.767 30.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.085 0.915 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.135 4.135 12 C -0.166 4.166 13 C 0.302 3.698 14 O -0.468 6.468 15 N -0.339 5.339 16 C -0.041 4.041 17 H 0.125 0.875 18 C -0.204 4.204 19 C -0.127 4.127 20 C -0.130 4.130 21 C -0.156 4.156 22 C -0.161 4.161 23 C -0.131 4.131 24 H 0.071 0.929 25 H 0.002 0.998 26 H 0.003 0.997 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.254 0.746 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.095 0.905 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.865 -28.031 -1.768 30.115 hybrid contribution -0.126 1.089 0.033 1.097 sum 10.739 -26.942 -1.735 29.056 Atomic orbital electron populations 1.70138 1.08096 1.27755 1.51920 1.26114 0.95798 1.03802 0.94803 0.85367 0.78664 0.77988 0.78531 1.19689 1.20959 1.18269 1.21756 0.93758 0.92194 1.50189 0.91524 1.19063 0.94716 0.93853 0.94290 1.21444 0.97801 0.92646 1.01379 1.21249 0.97510 0.93691 1.01006 1.21675 0.98927 0.89230 1.06804 1.21245 0.87806 0.86581 0.74133 1.90685 1.16577 1.88280 1.51296 1.45243 1.10493 1.03822 1.74317 1.21666 0.96217 0.80072 1.06175 0.87478 1.23653 1.04010 1.00422 0.92308 1.22390 0.97832 0.97012 0.95434 1.21915 0.92975 0.98518 0.99597 1.22456 0.96773 0.96574 0.99766 1.22363 0.94835 1.01373 0.97555 1.21709 0.97696 0.96857 0.96805 0.92857 0.99766 0.99738 0.91995 0.91996 0.93935 0.93896 0.86247 0.86174 0.74589 0.87149 0.87485 0.91373 0.90206 0.90711 0.90709 0.90572 0.92063 0.90506 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.62 13.29 21.45 0.28 -59.33 16 2 C -0.01 -0.48 5.46 84.65 0.46 -0.02 16 3 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.54 -31.63 9.11 25.60 0.23 -31.40 16 8 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 9 C 0.02 1.00 4.97 29.84 0.15 1.14 16 10 C -0.10 -3.93 5.15 30.59 0.16 -3.77 16 11 C -0.10 -3.55 4.50 30.59 0.14 -3.41 16 12 C -0.13 -3.17 5.70 29.85 0.17 -3.00 16 13 C 0.51 14.39 7.83 87.66 0.69 15.08 16 14 O -0.59 -22.76 15.55 -3.01 -0.05 -22.81 16 15 N -0.69 -13.53 5.39 -443.10 -2.39 -15.92 16 16 C 0.06 1.28 6.29 44.87 0.28 1.56 16 17 H 0.11 2.75 7.40 -2.38 -0.02 2.73 16 18 C -0.17 -2.31 10.16 30.48 0.31 -2.00 16 19 C -0.13 -1.76 2.46 -52.02 -0.13 -1.89 16 20 C -0.09 -1.02 5.74 31.57 0.18 -0.84 16 21 C -0.12 -1.12 6.91 31.93 0.22 -0.90 16 22 C -0.12 -1.36 6.84 31.72 0.22 -1.14 16 23 C -0.09 -1.24 6.55 31.23 0.20 -1.04 16 24 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 25 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 26 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 27 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 30 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 31 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.42 5.33 8.16 -92.70 -0.76 4.57 16 34 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.08 0.68 8.11 -2.39 -0.02 0.66 16 38 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -75.22 350.81 3.36 -71.86 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.20 Total: 10.71 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: 3.28 Total: -31.61 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -2.11 Total: -75.25 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.05 Total: -22.81 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -75.22 3.36 -71.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588721866.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.303 kcal (2) G-P(sol) polarization free energy of solvation -75.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds