Wall clock time and date at job start Mon Mar 30 2020 07:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00135 * 2 1 4 4 H 1.48496 * 109.47177 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47060 * 300.00075 * 3 2 1 6 6 H 1.48498 * 109.47032 * 59.99837 * 3 2 1 7 7 C 1.37874 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99824 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00106 * 0.02562 * 7 2 1 10 10 H 1.08991 * 110.67471 * 61.77391 * 9 7 2 11 11 C 1.54895 * 110.75305 * 298.54158 * 9 7 2 12 12 C 1.54263 * 104.19421 * 203.74413 * 11 9 7 13 13 C 1.53877 * 106.60052 * 23.61224 * 12 11 9 14 14 H 1.09001 * 110.03126 * 240.66406 * 13 12 11 15 15 N 1.46498 * 110.03631 * 119.28181 * 13 12 11 16 16 C 1.34777 * 119.99828 * 86.81360 * 15 13 12 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 13 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 13 19 19 C 1.52990 * 109.47398 * 180.02562 * 18 16 15 20 20 C 1.52995 * 109.47353 * 179.97438 * 19 18 16 21 21 C 1.52997 * 109.47600 * 180.02562 * 20 19 18 22 22 C 1.52999 * 117.50540 * 243.62461 * 21 20 19 23 23 C 1.53000 * 60.00149 * 252.50826 * 22 21 20 24 24 C 1.54268 * 106.63867 * 359.97352 * 13 12 11 25 25 H 0.97000 * 119.99909 * 0.02562 * 1 2 3 26 26 H 1.08995 * 110.48693 * 85.06630 * 11 9 7 27 27 H 1.09000 * 110.59455 * 322.47728 * 11 9 7 28 28 H 1.08993 * 110.03510 * 264.32407 * 12 11 9 29 29 H 1.09000 * 110.07184 * 142.91769 * 12 11 9 30 30 H 0.97001 * 120.00384 * 267.09806 * 15 13 12 31 31 H 1.08998 * 109.46954 * 300.00581 * 18 16 15 32 32 H 1.09002 * 109.46946 * 59.99717 * 18 16 15 33 33 H 1.08998 * 109.47508 * 300.00200 * 19 18 16 34 34 H 1.09011 * 109.47182 * 60.00188 * 19 18 16 35 35 H 1.08999 * 109.47616 * 300.00389 * 20 19 18 36 36 H 1.09003 * 109.47280 * 60.00024 * 20 19 18 37 37 H 1.09007 * 115.55020 * 29.33611 * 21 20 19 38 38 H 1.09003 * 117.49396 * 0.02562 * 22 21 20 39 39 H 1.08994 * 117.50071 * 145.01701 * 22 21 20 40 40 H 1.09000 * 117.49608 * 252.50453 * 23 22 21 41 41 H 1.09006 * 117.51346 * 107.47639 * 23 22 21 42 42 H 1.09002 * 110.48805 * 95.09377 * 24 13 12 43 43 H 1.09002 * 110.48586 * 217.73515 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6412 -2.5915 -0.8981 11 6 0.3767 -2.6282 1.2726 12 6 0.1820 -4.1487 1.4452 13 6 1.3575 -4.8275 0.7206 14 1 0.9840 -5.4665 -0.0796 15 7 2.1423 -5.6201 1.6703 16 6 1.7923 -6.8944 1.9354 17 8 0.8308 -7.3865 1.3839 18 6 2.5958 -7.7079 2.9171 19 6 1.9916 -9.1085 3.0340 20 6 2.8077 -9.9346 4.0301 21 6 2.2039 -11.3356 4.1465 22 6 1.6344 -11.7489 5.5051 23 6 2.9483 -12.3563 5.0096 24 6 2.2259 -3.6965 0.1319 25 1 -0.4850 0.8401 -0.0004 26 1 -0.5842 -2.1347 1.1268 27 1 0.8926 -2.2091 2.1365 28 1 -0.7619 -4.4576 0.9963 29 1 0.1948 -4.4097 2.5035 30 1 2.9113 -5.2266 2.1115 31 1 3.6256 -7.7847 2.5683 32 1 2.5780 -7.2215 3.8925 33 1 0.9617 -9.0321 3.3826 34 1 2.0099 -9.5947 2.0585 35 1 3.8375 -10.0111 3.6812 36 1 2.7899 -9.4487 5.0057 37 1 1.6973 -11.7048 3.2547 38 1 1.6896 -11.0225 6.3159 39 1 0.7529 -12.3899 5.5074 40 1 2.9311 -13.3970 4.6859 41 1 3.8685 -12.0298 5.4943 42 1 3.0429 -3.4503 0.8102 43 1 2.6137 -3.9827 -0.8457 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590771920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:06 Heat of formation + Delta-G solvation = -51.456349 kcal Electronic energy + Delta-G solvation = -19548.895392 eV Core-core repulsion = 16593.104971 eV Total energy + Delta-G solvation = -2955.790421 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.64675 -37.99269 -37.04928 -33.84261 -33.61583 -31.93575 -28.61736 -28.09766 -26.62352 -23.91755 -22.72903 -22.41265 -20.69499 -20.24335 -19.53679 -19.01760 -16.81790 -16.56307 -15.96853 -15.63860 -15.25057 -14.75928 -14.59516 -14.25593 -13.90427 -13.56481 -12.68170 -12.57019 -12.32895 -12.28954 -11.87513 -11.80676 -11.74632 -11.25504 -11.10739 -11.00291 -10.95352 -10.91995 -10.55732 -10.46705 -10.30307 -10.11217 -9.94423 -9.52647 -9.48644 -9.19479 -8.80181 -8.56203 -8.37559 -6.01443 -4.05050 2.90829 3.28479 3.36844 3.39736 3.47431 3.56921 4.37360 4.43005 4.63405 4.65899 4.81548 4.96223 5.06246 5.14378 5.30686 5.34600 5.44044 5.51412 5.54236 5.58049 5.63449 5.68680 5.75623 5.82339 5.84725 5.97253 6.10716 6.25197 6.33715 6.38282 6.61150 6.67811 6.75849 6.91337 6.95746 7.27303 7.34202 7.72079 7.85587 7.89341 8.02469 8.42062 8.54218 8.97360 9.59214 11.07692 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.053018 B = 0.002768 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.998550 B =10113.105954 C =10254.305317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.056 0.944 9 C 0.051 3.949 10 H 0.032 0.968 11 C -0.100 4.100 12 C -0.134 4.134 13 C 0.137 3.863 14 H 0.078 0.922 15 N -0.720 5.720 16 C 0.506 3.494 17 O -0.548 6.548 18 C -0.142 4.142 19 C -0.100 4.100 20 C -0.090 4.090 21 C -0.151 4.151 22 C -0.182 4.182 23 C -0.185 4.185 24 C -0.121 4.121 25 H 0.259 0.741 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.397 0.603 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.060 0.940 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.237 -18.452 9.290 21.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.074 0.926 9 C 0.032 3.968 10 H 0.050 0.950 11 C -0.138 4.138 12 C -0.173 4.173 13 C 0.033 3.967 14 H 0.096 0.904 15 N -0.370 5.370 16 C 0.292 3.708 17 O -0.426 6.426 18 C -0.182 4.182 19 C -0.138 4.138 20 C -0.127 4.127 21 C -0.169 4.169 22 C -0.219 4.219 23 C -0.222 4.222 24 C -0.159 4.159 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.231 0.769 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.079 0.921 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.388 -18.678 8.879 21.372 hybrid contribution 0.773 1.164 0.308 1.431 sum 6.161 -17.514 9.187 20.715 Atomic orbital electron populations 1.69974 1.05876 1.26336 1.50480 1.24987 0.94843 0.99046 0.95114 0.86579 0.80114 0.83995 0.77544 1.19838 1.21075 1.21109 1.21134 0.92776 0.90433 1.50854 0.92608 1.19568 0.92012 0.91056 0.94144 0.95003 1.22301 1.01660 0.90353 0.99502 1.22646 0.97070 0.98833 0.98747 1.21853 0.92201 0.92022 0.90595 0.90353 1.46391 1.32493 1.12670 1.45494 1.20682 0.85086 0.82200 0.82821 1.90678 1.28685 1.71187 1.52076 1.21699 1.00392 0.96623 0.99520 1.21294 0.99769 0.92935 0.99794 1.21213 0.99042 0.92761 0.99694 1.22365 1.03656 0.95810 0.95084 1.23034 0.97220 1.03932 0.97722 1.22966 0.96112 0.98452 1.04635 1.22766 0.98713 0.95493 0.98941 0.93113 0.91265 0.93541 0.92676 0.93303 0.76894 0.89187 0.89167 0.91094 0.91197 0.91571 0.91816 0.87704 0.88813 0.89004 0.89010 0.88894 0.92097 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.31 12.02 55.43 0.67 -24.64 16 2 C 0.06 1.69 5.33 -17.82 -0.10 1.60 16 3 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.51 -13.76 8.54 -34.44 -0.29 -14.06 16 8 H 0.06 1.47 7.78 -52.49 -0.41 1.06 16 9 C 0.05 1.24 2.82 -89.73 -0.25 0.99 16 10 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 11 C -0.10 -2.31 5.57 -25.07 -0.14 -2.45 16 12 C -0.13 -2.66 6.59 -25.61 -0.17 -2.83 16 13 C 0.14 2.51 3.23 -66.81 -0.22 2.30 16 14 H 0.08 1.53 7.59 -51.93 -0.39 1.14 16 15 N -0.72 -10.77 4.99 -52.72 -0.26 -11.03 16 16 C 0.51 7.54 7.82 -10.98 -0.09 7.45 16 17 O -0.55 -10.38 15.65 5.55 0.09 -10.29 16 18 C -0.14 -1.45 5.70 -27.89 -0.16 -1.61 16 19 C -0.10 -1.02 4.46 -26.74 -0.12 -1.14 16 20 C -0.09 -0.72 5.49 -26.73 -0.15 -0.87 16 21 C -0.15 -1.23 5.74 -90.62 -0.52 -1.75 16 22 C -0.18 -1.38 10.18 -26.73 -0.27 -1.65 16 23 C -0.18 -1.32 10.25 -26.73 -0.27 -1.59 16 24 C -0.12 -2.39 5.95 -25.03 -0.15 -2.54 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 26 H 0.07 1.76 7.37 -51.93 -0.38 1.38 16 27 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.92 7.92 -51.93 -0.41 0.51 16 30 H 0.40 4.91 8.35 -40.82 -0.34 4.57 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 34 H 0.07 0.79 8.10 -51.92 -0.42 0.37 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.48 7.88 -51.93 -0.41 0.07 16 37 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16 38 H 0.09 0.67 8.03 -51.93 -0.42 0.26 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 1.15 7.63 -51.93 -0.40 0.75 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -30.13 347.65 -9.96 -40.09 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -7.78 Total: 2.83 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -2.89 Total: -18.16 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.40 Total: -35.67 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.13 -9.96 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590771920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.364 kcal (2) G-P(sol) polarization free energy of solvation -30.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds