Wall clock time and date at job start Mon Mar 30 2020 07:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00135 * 2 1 4 4 H 1.48496 * 109.47177 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47060 * 300.00075 * 3 2 1 6 6 H 1.48498 * 109.47032 * 59.99837 * 3 2 1 7 7 C 1.37874 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99824 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00106 * 0.02562 * 7 2 1 10 10 H 1.08991 * 110.67471 * 61.77391 * 9 7 2 11 11 C 1.54895 * 110.75305 * 298.54158 * 9 7 2 12 12 C 1.54263 * 104.19421 * 203.74413 * 11 9 7 13 13 C 1.53877 * 106.60052 * 23.61224 * 12 11 9 14 14 H 1.09001 * 110.03126 * 240.66406 * 13 12 11 15 15 N 1.46498 * 110.03631 * 119.28181 * 13 12 11 16 16 C 1.34777 * 119.99828 * 86.81360 * 15 13 12 17 17 O 1.21283 * 120.00222 * 0.28168 * 16 15 13 18 18 C 1.50703 * 120.00290 * 180.27728 * 16 15 13 19 19 C 1.52990 * 109.47398 * 180.02562 * 18 16 15 20 20 C 1.52995 * 109.47353 * 179.97438 * 19 18 16 21 21 C 1.52997 * 109.47600 * 180.02562 * 20 19 18 22 22 C 1.52999 * 117.50540 * 243.62461 * 21 20 19 23 23 C 1.53000 * 60.00149 * 252.50826 * 22 21 20 24 24 C 1.54268 * 106.63867 * 359.97352 * 13 12 11 25 25 H 0.97000 * 119.99909 * 0.02562 * 1 2 3 26 26 H 1.08995 * 110.48693 * 85.06630 * 11 9 7 27 27 H 1.09000 * 110.59455 * 322.47728 * 11 9 7 28 28 H 1.08993 * 110.03510 * 264.32407 * 12 11 9 29 29 H 1.09000 * 110.07184 * 142.91769 * 12 11 9 30 30 H 0.97001 * 120.00384 * 267.09806 * 15 13 12 31 31 H 1.08998 * 109.46954 * 300.00581 * 18 16 15 32 32 H 1.09002 * 109.46946 * 59.99717 * 18 16 15 33 33 H 1.08998 * 109.47508 * 300.00200 * 19 18 16 34 34 H 1.09011 * 109.47182 * 60.00188 * 19 18 16 35 35 H 1.08999 * 109.47616 * 300.00389 * 20 19 18 36 36 H 1.09003 * 109.47280 * 60.00024 * 20 19 18 37 37 H 1.09007 * 115.55020 * 29.33611 * 21 20 19 38 38 H 1.09003 * 117.49396 * 0.02562 * 22 21 20 39 39 H 1.08994 * 117.50071 * 145.01701 * 22 21 20 40 40 H 1.09000 * 117.49608 * 252.50453 * 23 22 21 41 41 H 1.09006 * 117.51346 * 107.47639 * 23 22 21 42 42 H 1.09002 * 110.48805 * 95.09377 * 24 13 12 43 43 H 1.09002 * 110.48586 * 217.73515 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6412 -2.5915 -0.8981 11 6 0.3767 -2.6282 1.2726 12 6 0.1820 -4.1487 1.4452 13 6 1.3575 -4.8275 0.7206 14 1 0.9840 -5.4665 -0.0796 15 7 2.1423 -5.6201 1.6703 16 6 1.7923 -6.8944 1.9354 17 8 0.8308 -7.3865 1.3839 18 6 2.5958 -7.7079 2.9171 19 6 1.9916 -9.1085 3.0340 20 6 2.8077 -9.9346 4.0301 21 6 2.2039 -11.3356 4.1465 22 6 1.6344 -11.7489 5.5051 23 6 2.9483 -12.3563 5.0096 24 6 2.2259 -3.6965 0.1319 25 1 -0.4850 0.8401 -0.0004 26 1 -0.5842 -2.1347 1.1268 27 1 0.8926 -2.2091 2.1365 28 1 -0.7619 -4.4576 0.9963 29 1 0.1948 -4.4097 2.5035 30 1 2.9113 -5.2266 2.1115 31 1 3.6256 -7.7847 2.5683 32 1 2.5780 -7.2215 3.8925 33 1 0.9617 -9.0321 3.3826 34 1 2.0099 -9.5947 2.0585 35 1 3.8375 -10.0111 3.6812 36 1 2.7899 -9.4487 5.0057 37 1 1.6973 -11.7048 3.2547 38 1 1.6896 -11.0225 6.3159 39 1 0.7529 -12.3899 5.5074 40 1 2.9311 -13.3970 4.6859 41 1 3.8685 -12.0298 5.4943 42 1 3.0429 -3.4503 0.8102 43 1 2.6137 -3.9827 -0.8457 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590771920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:05 Heat of formation + Delta-G solvation = -67.619665 kcal Electronic energy + Delta-G solvation = -19549.596286 eV Core-core repulsion = 16593.104971 eV Total energy + Delta-G solvation = -2956.491315 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.92389 -38.87611 -38.39834 -35.27475 -34.68188 -33.72137 -30.06602 -29.55526 -28.04700 -25.78366 -23.51743 -23.13468 -21.62511 -21.32204 -21.03977 -20.68145 -18.47835 -17.95071 -17.01791 -16.71445 -16.58897 -16.26134 -16.00153 -15.33453 -14.93481 -14.82397 -14.38766 -14.00046 -13.69431 -13.33795 -13.05272 -13.01054 -12.81004 -12.62312 -12.52543 -12.36366 -12.33731 -12.11287 -11.91976 -11.72703 -11.66748 -11.39219 -11.09957 -11.09464 -10.80605 -10.72841 -10.65341 -10.46652 -9.94450 -8.09752 -6.20370 1.42272 1.44453 1.55388 1.74445 2.32781 2.46079 2.95649 3.21118 3.70491 3.81904 3.97005 4.02442 4.07909 4.09974 4.20144 4.23623 4.33061 4.45626 4.68724 4.75724 4.79540 4.82213 4.83547 4.91157 4.92344 4.97523 5.03634 5.06573 5.12233 5.15979 5.27966 5.29167 5.32121 5.38957 5.41784 5.52881 5.66786 5.71226 5.93757 5.99826 6.37327 6.69985 6.90829 7.38315 7.47692 8.98961 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.053018 B = 0.002768 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.998550 B =10113.105954 C =10254.305317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.008 3.992 3 Si 0.955 3.045 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.039 3.961 10 H -0.002 1.002 11 C -0.089 4.089 12 C -0.124 4.124 13 C 0.149 3.851 14 H 0.066 0.934 15 N -0.712 5.712 16 C 0.502 3.498 17 O -0.593 6.593 18 C -0.131 4.131 19 C -0.097 4.097 20 C -0.081 4.081 21 C -0.166 4.166 22 C -0.188 4.188 23 C -0.177 4.177 24 C -0.106 4.106 25 H 0.259 0.741 26 H 0.036 0.964 27 H 0.039 0.961 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.414 0.586 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.076 0.924 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.690 -19.108 10.749 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.190 4.190 3 Si 0.781 3.219 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.565 4.565 8 H 0.078 0.922 9 C 0.020 3.980 10 H 0.016 0.984 11 C -0.127 4.127 12 C -0.163 4.163 13 C 0.044 3.956 14 H 0.084 0.916 15 N -0.363 5.363 16 C 0.291 3.709 17 O -0.474 6.474 18 C -0.171 4.171 19 C -0.135 4.135 20 C -0.118 4.118 21 C -0.184 4.184 22 C -0.225 4.225 23 C -0.214 4.214 24 C -0.144 4.144 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.251 0.749 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.095 0.905 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.881 -19.341 10.358 23.312 hybrid contribution -0.038 1.340 -0.175 1.352 sum 7.843 -18.001 10.182 22.119 Atomic orbital electron populations 1.70117 1.07390 1.27059 1.51546 1.25809 0.95629 1.02607 0.94956 0.85544 0.79300 0.79696 0.77333 1.18633 1.21088 1.20854 1.21516 0.93166 0.91568 1.50236 0.92166 1.19559 0.92874 0.92476 0.93106 0.98424 1.22070 0.99601 0.92423 0.98648 1.22521 0.97604 0.96388 0.99765 1.21432 0.91694 0.91646 0.90830 0.91611 1.46216 1.32595 1.12645 1.44864 1.21559 0.84697 0.81946 0.82714 1.90669 1.30875 1.71995 1.53880 1.21735 1.00732 0.95415 0.99187 1.21236 0.99195 0.93478 0.99564 1.21142 0.99094 0.92154 0.99419 1.22391 1.04544 0.96429 0.95077 1.23114 0.97684 1.04199 0.97464 1.23041 0.96189 0.98468 1.03704 1.22568 0.98075 0.93803 0.99993 0.93220 0.94482 0.94193 0.93481 0.91920 0.74944 0.86238 0.86639 0.93166 0.92822 0.90291 0.90803 0.88716 0.88339 0.88972 0.88509 0.87940 0.90531 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.72 12.02 21.45 0.26 -53.46 16 2 C 0.01 0.47 5.33 84.65 0.45 0.92 16 3 Si 0.96 42.99 29.54 68.60 2.03 45.02 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.53 -28.23 8.54 25.60 0.22 -28.01 16 8 H 0.06 3.10 7.78 -2.91 -0.02 3.08 16 9 C 0.04 1.91 2.82 -10.22 -0.03 1.88 16 10 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 11 C -0.09 -4.20 5.57 31.67 0.18 -4.02 16 12 C -0.12 -4.89 6.59 31.32 0.21 -4.69 16 13 C 0.15 5.33 3.23 45.72 0.15 5.48 16 14 H 0.07 2.56 7.59 -2.39 -0.02 2.54 16 15 N -0.71 -19.61 4.99 -439.09 -2.19 -21.80 16 16 C 0.50 14.00 7.82 87.66 0.69 14.68 16 17 O -0.59 -22.22 15.65 -3.04 -0.05 -22.27 16 18 C -0.13 -2.25 5.70 29.85 0.17 -2.08 16 19 C -0.10 -1.82 4.46 30.59 0.14 -1.69 16 20 C -0.08 -1.10 5.49 30.59 0.17 -0.93 16 21 C -0.17 -2.48 5.74 -10.79 -0.06 -2.54 16 22 C -0.19 -2.56 10.18 30.59 0.31 -2.25 16 23 C -0.18 -2.17 10.25 30.60 0.31 -1.86 16 24 C -0.11 -4.08 5.95 31.70 0.19 -3.89 16 25 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 26 H 0.04 1.95 7.37 -2.39 -0.02 1.93 16 27 H 0.04 1.89 8.04 -2.39 -0.02 1.87 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.06 2.28 7.92 -2.39 -0.02 2.27 16 30 H 0.41 8.78 8.35 -92.71 -0.77 8.01 16 31 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 34 H 0.05 1.18 8.10 -2.38 -0.02 1.16 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.07 0.88 7.88 -2.39 -0.02 0.86 16 37 H 0.09 1.58 8.08 -2.38 -0.02 1.56 16 38 H 0.10 1.23 8.03 -2.39 -0.02 1.21 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.10 1.07 8.14 -2.39 -0.02 1.06 16 41 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.08 2.70 7.63 -2.39 -0.02 2.68 16 43 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -66.32 347.65 3.32 -62.99 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.19 Total: 18.52 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 3.08 Total: -29.00 kcal Atomic # 7 Polarization: -73.33 SS G_CDS: -1.93 Total: -75.26 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.05 Total: -22.27 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -66.32 3.32 -62.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590771920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.625 kcal (2) G-P(sol) polarization free energy of solvation -66.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds