Wall clock time and date at job start Mon Mar 30 2020 06:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99849 * 2 1 4 4 H 1.48500 * 109.46984 * 270.00013 * 3 2 1 5 5 H 1.48497 * 109.46888 * 30.00068 * 3 2 1 6 6 H 1.48504 * 109.46843 * 150.00178 * 3 2 1 7 7 C 1.37875 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99800 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99722 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46614 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46986 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47355 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.47168 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00363 * 359.97438 * 13 12 11 15 15 N 1.34784 * 119.99988 * 179.97438 * 13 12 11 16 16 C 1.46493 * 119.99864 * 179.72721 * 15 13 12 17 17 C 1.53001 * 109.47084 * 180.02562 * 16 15 13 18 18 H 1.09000 * 115.55299 * 29.32287 * 17 16 15 19 19 C 1.52998 * 117.49650 * 243.62172 * 17 16 15 20 20 C 1.52995 * 117.50059 * 174.99811 * 17 16 15 21 21 H 1.09004 * 117.50271 * 359.97438 * 20 17 16 22 22 C 1.53001 * 117.49922 * 214.97252 * 20 17 16 23 23 C 1.53006 * 117.49628 * 128.62193 * 22 20 17 24 24 C 1.53000 * 60.00040 * 252.51576 * 23 22 20 25 25 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47314 * 60.00505 * 9 7 2 27 27 H 1.09002 * 109.47150 * 299.99879 * 9 7 2 28 28 H 1.09000 * 109.47521 * 60.00223 * 10 9 7 29 29 H 1.09002 * 109.47113 * 299.99718 * 10 9 7 30 30 H 1.09000 * 109.46966 * 59.99691 * 11 10 9 31 31 H 1.09002 * 109.46807 * 299.99713 * 11 10 9 32 32 H 1.08998 * 109.46837 * 59.99832 * 12 11 10 33 33 H 1.09002 * 109.46926 * 299.99636 * 12 11 10 34 34 H 0.97000 * 119.99339 * 0.02562 * 15 13 12 35 35 H 1.09007 * 109.47196 * 299.99538 * 16 15 13 36 36 H 1.09006 * 109.47678 * 59.99732 * 16 15 13 37 37 H 1.09003 * 117.50441 * 359.97438 * 19 17 16 38 38 H 1.08997 * 117.50181 * 145.01905 * 19 17 16 39 39 H 1.08997 * 115.55758 * 274.33202 * 22 20 17 40 40 H 1.09003 * 117.49886 * 0.02562 * 23 22 20 41 41 H 1.08999 * 117.49942 * 145.02354 * 23 22 20 42 42 H 1.09000 * 117.49447 * 252.51095 * 24 23 22 43 43 H 1.08995 * 117.51746 * 107.48292 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1292 0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5515 -2.6365 0.0001 12 6 6.0616 -4.0790 -0.0004 13 6 7.5685 -4.0790 -0.0010 14 8 8.1750 -3.0286 -0.0014 15 7 8.2424 -5.2462 -0.0010 16 6 9.7074 -5.2461 -0.0076 17 6 10.2174 -6.6886 -0.0068 18 1 9.5637 -7.4188 -0.4838 19 6 11.0269 -7.1510 1.2064 20 6 11.7270 -6.9043 -0.1314 21 1 12.3568 -6.0185 -0.2145 22 6 12.2033 -8.1286 -0.9158 23 6 13.2367 -7.9013 -2.0210 24 6 11.7878 -8.2319 -2.3847 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6796 0.8895 27 1 3.8745 -0.6807 -0.8905 28 1 3.6579 -3.1506 -0.8897 29 1 3.6585 -3.1501 0.8904 30 1 5.9148 -2.1225 0.8901 31 1 5.9148 -2.1228 -0.8899 32 1 5.6982 -4.5925 -0.8906 33 1 5.6982 -4.5931 0.8894 34 1 7.7574 -6.0862 -0.0010 35 1 10.0667 -4.7347 -0.9006 36 1 10.0748 -4.7299 0.8794 37 1 11.1964 -6.4274 2.0039 38 1 10.9057 -8.1854 1.5278 39 1 12.2714 -9.0550 -0.3456 40 1 13.5775 -6.8796 -2.1890 41 1 13.9849 -8.6782 -2.1779 42 1 11.5829 -9.2265 -2.7809 43 1 11.1748 -7.4280 -2.7921 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590886274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:21 Heat of formation + Delta-G solvation = -20.025809 kcal Electronic energy + Delta-G solvation = -18786.230349 eV Core-core repulsion = 15831.802858 eV Total energy + Delta-G solvation = -2954.427491 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.89114 -38.97805 -36.23609 -35.01334 -34.07752 -32.54792 -30.27913 -27.73185 -25.47667 -24.03751 -22.86740 -22.12060 -21.37999 -20.63322 -19.99567 -19.77773 -16.93131 -16.68140 -16.44296 -15.89788 -15.84783 -15.17019 -14.62907 -14.28424 -14.16263 -13.72624 -13.55890 -13.05108 -12.62651 -12.26898 -12.13261 -12.04721 -11.87790 -11.72968 -11.67476 -11.36040 -11.13945 -11.07910 -10.71159 -10.51235 -10.35803 -10.12336 -9.88977 -9.77373 -9.62163 -9.37935 -9.15306 -9.09665 -8.47557 -5.98788 -3.96100 2.70119 2.89927 3.27099 3.36877 3.43743 3.50100 3.50711 4.06356 4.27995 4.41063 4.51817 4.56871 4.63124 4.76388 4.86470 4.92384 5.01241 5.22379 5.25127 5.31045 5.33975 5.36355 5.40794 5.45844 5.46822 5.68696 5.69204 5.73280 5.80875 5.85894 6.06180 6.18417 6.30706 6.45009 6.71278 6.85327 7.01808 7.40513 7.41935 7.53476 7.86797 8.23996 8.60302 9.06292 9.64677 11.14680 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.049187 B = 0.002316 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.121846 B =12084.978856 C =12167.503160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.103 4.103 11 C -0.106 4.106 12 C -0.139 4.139 13 C 0.511 3.489 14 O -0.539 6.539 15 N -0.736 5.736 16 C 0.150 3.850 17 C -0.160 4.160 18 H 0.112 0.888 19 C -0.167 4.167 20 C -0.113 4.113 21 H 0.109 0.891 22 C -0.127 4.127 23 C -0.177 4.177 24 C -0.177 4.177 25 H 0.262 0.738 26 H 0.016 0.984 27 H 0.011 0.989 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.401 0.599 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.586 -19.321 -1.053 32.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.144 4.144 12 C -0.179 4.179 13 C 0.299 3.701 14 O -0.415 6.415 15 N -0.389 5.389 16 C 0.026 3.974 17 C -0.178 4.178 18 H 0.130 0.870 19 C -0.204 4.204 20 C -0.132 4.132 21 H 0.127 0.873 22 C -0.145 4.145 23 C -0.213 4.213 24 C -0.214 4.214 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.235 0.765 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 25.877 -18.420 -1.048 31.781 hybrid contribution 0.137 0.384 -0.035 0.409 sum 26.015 -18.037 -1.083 31.674 Atomic orbital electron populations 1.69923 1.06293 1.26794 1.51535 1.25049 0.94747 0.99234 0.94646 0.86770 0.80432 0.83543 0.78532 1.20323 1.21468 1.18901 1.21187 0.89681 0.94373 1.50434 0.91109 1.19583 0.96893 0.92539 0.96319 1.21479 0.91732 0.99892 1.00924 1.21481 0.97170 0.92896 1.02877 1.21771 0.90183 1.01710 1.04194 1.21092 0.90918 0.83117 0.74995 1.90701 1.70674 1.31386 1.48738 1.46071 1.06744 1.09087 1.76994 1.20836 0.80387 0.93978 1.02207 1.22573 0.94416 0.97344 1.03488 0.87015 1.23215 1.03201 1.02675 0.91275 1.21840 0.93687 0.98528 0.99147 0.87348 1.21759 1.04197 0.98113 0.90420 1.22990 0.92477 1.02883 1.02997 1.22986 0.98020 1.03030 0.97348 0.92842 0.96608 0.97059 0.92866 0.92844 0.91815 0.91832 0.88999 0.88981 0.76530 0.91364 0.91453 0.88370 0.88493 0.87632 0.88654 0.88799 0.88831 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.56 13.96 55.43 0.77 -27.78 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.55 27.47 -169.99 -4.67 17.88 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 7 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.02 -0.40 4.04 -27.88 -0.11 -0.51 16 10 C -0.10 -2.05 5.15 -26.73 -0.14 -2.18 16 11 C -0.11 -1.82 4.50 -26.73 -0.12 -1.94 16 12 C -0.14 -1.77 5.70 -27.89 -0.16 -1.93 16 13 C 0.51 6.93 7.83 -10.98 -0.09 6.84 16 14 O -0.54 -9.65 15.98 5.56 0.09 -9.56 16 15 N -0.74 -7.12 5.56 -60.29 -0.33 -7.46 16 16 C 0.15 1.36 5.95 -4.04 -0.02 1.33 16 17 C -0.16 -1.05 5.49 -90.62 -0.50 -1.55 16 18 H 0.11 0.67 8.04 -51.93 -0.42 0.25 16 19 C -0.17 -1.00 9.90 -26.73 -0.26 -1.26 16 20 C -0.11 -0.71 5.59 -90.62 -0.51 -1.22 16 21 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 22 C -0.13 -0.74 5.87 -90.61 -0.53 -1.27 16 23 C -0.18 -0.98 10.25 -26.73 -0.27 -1.26 16 24 C -0.18 -1.03 10.18 -26.73 -0.27 -1.30 16 25 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 26 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 27 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 31 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.40 2.73 8.40 -40.82 -0.34 2.39 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.68 7.88 -51.93 -0.41 0.27 16 37 H 0.10 0.60 8.03 -51.93 -0.42 0.18 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 356.62 15.07 5.37 5.37 Total: -1.00 -33.99 356.62 -10.04 -44.03 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -7.85 Total: -2.52 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -3.42 Total: -19.96 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.44 Total: -35.24 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.67 Total: 17.88 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.99 -10.04 -44.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590886274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.000 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds