Wall clock time and date at job start Mon Mar 30 2020 06:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.47199 * 2 1 4 4 C 1.37448 * 126.48663 * 265.03033 * 3 2 1 5 5 C 1.34482 * 106.94228 * 179.97438 * 4 3 2 6 6 N 1.34277 * 108.29498 * 0.26382 * 5 4 3 7 7 C 1.31126 * 109.29580 * 359.55291 * 6 5 4 8 8 N 1.38923 * 125.78276 * 180.17290 * 7 6 5 9 9 C 1.34776 * 119.99716 * 0.32041 * 8 7 6 10 10 O 1.21277 * 120.00367 * 359.97438 * 9 8 7 11 11 C 1.50703 * 120.00082 * 179.97438 * 9 8 7 12 12 C 1.52995 * 109.47216 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46726 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.46848 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47040 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00332 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00021 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00336 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99820 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47259 * 90.00629 * 19 17 15 21 21 H 1.48503 * 109.47081 * 210.00402 * 19 17 15 22 22 H 1.48498 * 109.47230 * 330.00257 * 19 17 15 23 23 H 1.08991 * 109.47003 * 60.00081 * 1 2 3 24 24 H 1.09002 * 109.47041 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46824 * 299.99753 * 1 2 3 26 26 H 1.09000 * 109.46824 * 240.00246 * 2 1 3 27 27 H 1.09004 * 109.47119 * 120.00275 * 2 1 3 28 28 H 1.07999 * 126.53107 * 359.93597 * 4 3 2 29 29 H 1.08002 * 125.84862 * 179.97438 * 5 4 3 30 30 H 0.96995 * 120.00318 * 180.31526 * 8 7 6 31 31 H 1.08999 * 109.46785 * 299.99846 * 11 9 8 32 32 H 1.09002 * 109.46817 * 59.99847 * 11 9 8 33 33 H 1.08999 * 109.47383 * 299.99805 * 12 11 9 34 34 H 1.09002 * 109.47087 * 60.00338 * 12 11 9 35 35 H 1.08997 * 109.47626 * 299.99778 * 13 12 11 36 36 H 1.09001 * 109.47220 * 60.00836 * 13 12 11 37 37 H 1.09004 * 109.47404 * 300.00568 * 14 13 12 38 38 H 1.09002 * 109.47023 * 60.00568 * 14 13 12 39 39 H 0.96995 * 120.00238 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3811 2.1198 -1.1009 5 6 2.7663 3.3279 -0.6528 6 7 2.6521 3.3372 0.6851 7 6 2.1980 2.1754 1.0893 8 7 1.9486 1.8147 2.4075 9 6 2.1687 2.6984 3.4011 10 8 2.5849 3.8082 3.1444 11 6 1.8977 2.3074 4.8310 12 6 2.2283 3.4830 5.7527 13 6 1.9525 3.0862 7.2043 14 6 2.2838 4.2616 8.1261 15 6 2.0127 3.8706 9.5560 16 1 1.6409 2.8828 9.7845 17 6 2.2384 4.7744 10.5725 18 7 2.0023 4.4330 11.8204 19 14 2.8808 6.4833 10.1772 20 1 1.7365 7.4021 9.9502 21 1 3.6968 6.9805 11.3140 22 1 3.7199 6.4259 8.9534 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.3612 1.7923 -2.1298 29 1 3.1129 4.1482 -1.2638 30 1 1.6160 0.9270 2.6129 31 1 0.8462 2.0427 4.9422 32 1 2.5180 1.4516 5.0975 33 1 3.2799 3.7473 5.6414 34 1 1.6083 4.3391 5.4863 35 1 0.9008 2.8222 7.3154 36 1 2.5722 2.2301 7.4710 37 1 3.3356 4.5253 8.0150 38 1 1.6644 5.1181 7.8596 39 1 2.1614 5.0687 12.5355 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591104850.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:20 Heat of formation + Delta-G solvation = 17.915791 kcal Electronic energy + Delta-G solvation = -19216.982745 eV Core-core repulsion = 16160.660182 eV Total energy + Delta-G solvation = -3056.322563 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.28768 -39.61621 -35.42330 -35.19889 -34.63853 -32.57260 -30.50281 -30.32232 -28.62755 -26.02392 -24.25882 -22.96198 -21.82877 -20.76393 -20.02331 -19.72883 -18.25136 -16.79852 -16.50496 -16.26412 -16.01555 -15.42790 -14.90641 -14.21757 -14.18347 -13.96974 -13.90947 -13.71419 -13.10647 -12.64814 -12.63212 -12.42438 -12.13421 -11.94767 -11.74198 -11.11942 -10.77516 -10.74031 -10.53039 -10.22299 -9.84732 -9.83885 -9.68928 -9.62453 -9.42827 -9.10514 -8.47485 -8.03829 -5.98938 -3.96435 1.70728 2.00124 2.62124 2.96245 3.25275 3.37905 3.44887 3.51501 4.05922 4.37175 4.40294 4.52321 4.58677 4.68837 4.97160 5.05525 5.11132 5.21097 5.24326 5.36148 5.39496 5.47609 5.62681 5.74236 6.01686 6.01846 6.13188 6.40240 6.51451 6.68407 6.82080 6.97997 6.98446 7.02862 7.40010 7.52760 7.86508 7.98568 8.21037 8.59709 9.05906 9.64616 11.14543 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.040253 B = 0.003012 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.438379 B = 9293.366588 C = 9874.554355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.099 3.901 3 N -0.478 5.478 4 C -0.067 4.067 5 C -0.013 4.013 6 N -0.471 5.471 7 C 0.437 3.563 8 N -0.648 5.648 9 C 0.509 3.491 10 O -0.467 6.467 11 C -0.131 4.131 12 C -0.108 4.108 13 C -0.102 4.102 14 C -0.016 4.016 15 C -0.519 4.519 16 H 0.071 0.929 17 C 0.065 3.935 18 N -0.907 5.907 19 Si 0.879 3.121 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.264 1.264 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.176 0.824 29 H 0.172 0.828 30 H 0.412 0.588 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.016 0.984 38 H 0.012 0.988 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.357 -12.527 -27.865 30.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.170 5.170 4 C -0.198 4.198 5 C -0.160 4.160 6 N -0.196 5.196 7 C 0.086 3.914 8 N -0.302 5.302 9 C 0.295 3.705 10 O -0.333 6.333 11 C -0.171 4.171 12 C -0.146 4.146 13 C -0.139 4.139 14 C -0.053 4.053 15 C -0.557 4.557 16 H 0.089 0.911 17 C -0.136 4.136 18 N -0.546 5.546 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.188 1.188 23 H 0.084 0.916 24 H 0.097 0.903 25 H 0.082 0.918 26 H 0.115 0.885 27 H 0.105 0.895 28 H 0.193 0.807 29 H 0.189 0.811 30 H 0.248 0.752 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.035 0.965 38 H 0.030 0.970 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.879 -11.068 -27.282 29.502 hybrid contribution -0.129 -0.432 -0.633 0.777 sum -2.008 -11.500 -27.915 30.258 Atomic orbital electron populations 1.22200 0.93974 1.03329 1.03514 1.21834 0.95727 0.80143 1.04641 1.45578 1.52780 1.12582 1.06028 1.22464 1.11429 0.94100 0.91792 1.22305 1.05536 0.97280 0.90909 1.70880 1.20489 1.16861 1.11331 1.19714 1.02164 0.87551 0.81956 1.42882 1.67740 1.18289 1.01299 1.21317 0.77587 0.84677 0.86901 1.90842 1.39530 1.19733 1.83235 1.21779 1.03967 1.02313 0.89035 1.21528 1.02573 0.95843 0.94652 1.21473 1.00661 0.99988 0.91823 1.19580 0.96430 0.94034 0.95291 1.21180 1.43922 1.01276 0.89363 0.91119 1.25040 0.95016 0.98611 0.94941 1.69918 1.49643 1.35811 0.99218 0.86775 0.79530 0.84808 0.78208 1.20302 1.21481 1.18828 0.91570 0.90286 0.91825 0.88536 0.89467 0.80690 0.81106 0.75246 0.88608 0.88606 0.91511 0.91527 0.92803 0.92777 0.96548 0.96990 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 10.24 37.16 0.38 -0.30 16 2 C 0.10 0.44 6.63 -4.04 -0.03 0.42 16 3 N -0.48 -4.25 2.79 -117.43 -0.33 -4.58 16 4 C -0.07 -0.59 11.59 -16.36 -0.19 -0.78 16 5 C -0.01 -0.15 11.85 -17.81 -0.21 -0.36 16 6 N -0.47 -7.46 9.43 -13.83 -0.13 -7.59 16 7 C 0.44 5.55 8.43 -319.11 -2.69 2.86 16 8 N -0.65 -7.03 5.40 -12.53 -0.07 -7.10 16 9 C 0.51 7.16 7.79 -10.98 -0.09 7.08 16 10 O -0.47 -8.92 14.66 5.56 0.08 -8.84 16 11 C -0.13 -1.58 5.70 -27.88 -0.16 -1.74 16 12 C -0.11 -1.80 4.50 -26.73 -0.12 -1.92 16 13 C -0.10 -1.98 5.15 -26.73 -0.14 -2.11 16 14 C -0.02 -0.39 4.04 -27.88 -0.11 -0.51 16 15 C -0.52 -15.12 9.66 -34.44 -0.33 -15.45 16 16 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 17 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 18 N -0.91 -28.50 13.96 55.43 0.77 -27.73 16 19 Si 0.88 22.53 27.47 -169.99 -4.67 17.87 16 20 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 23 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 0.27 7.72 -51.93 -0.40 -0.13 16 28 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 29 H 0.17 1.60 8.06 -52.49 -0.42 1.17 16 30 H 0.41 2.65 8.11 -40.82 -0.33 2.32 16 31 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 34 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 38 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 39 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 329.84 15.07 4.97 4.97 Total: -1.00 -38.34 329.84 -9.30 -47.64 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -6.15 Total: -3.67 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -3.78 Total: -10.98 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.25 Total: -46.99 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.08 Total: -8.84 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -38.34 -9.30 -47.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591104850.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.560 kcal (2) G-P(sol) polarization free energy of solvation -38.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds