Wall clock time and date at job start Mon Mar 30 2020 06:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.47199 * 2 1 4 4 C 1.37448 * 126.48663 * 265.03033 * 3 2 1 5 5 C 1.34482 * 106.94228 * 179.97438 * 4 3 2 6 6 N 1.34277 * 108.29498 * 0.26382 * 5 4 3 7 7 C 1.31126 * 109.29580 * 359.55291 * 6 5 4 8 8 N 1.38923 * 125.78276 * 180.17290 * 7 6 5 9 9 C 1.34776 * 119.99716 * 0.32041 * 8 7 6 10 10 O 1.21277 * 120.00367 * 359.97438 * 9 8 7 11 11 C 1.50703 * 120.00082 * 179.97438 * 9 8 7 12 12 C 1.52995 * 109.47216 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46726 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.46848 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47040 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00332 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00021 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00336 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99820 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47259 * 90.00629 * 19 17 15 21 21 H 1.48503 * 109.47081 * 210.00402 * 19 17 15 22 22 H 1.48498 * 109.47230 * 330.00257 * 19 17 15 23 23 H 1.08991 * 109.47003 * 60.00081 * 1 2 3 24 24 H 1.09002 * 109.47041 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46824 * 299.99753 * 1 2 3 26 26 H 1.09000 * 109.46824 * 240.00246 * 2 1 3 27 27 H 1.09004 * 109.47119 * 120.00275 * 2 1 3 28 28 H 1.07999 * 126.53107 * 359.93597 * 4 3 2 29 29 H 1.08002 * 125.84862 * 179.97438 * 5 4 3 30 30 H 0.96995 * 120.00318 * 180.31526 * 8 7 6 31 31 H 1.08999 * 109.46785 * 299.99846 * 11 9 8 32 32 H 1.09002 * 109.46817 * 59.99847 * 11 9 8 33 33 H 1.08999 * 109.47383 * 299.99805 * 12 11 9 34 34 H 1.09002 * 109.47087 * 60.00338 * 12 11 9 35 35 H 1.08997 * 109.47626 * 299.99778 * 13 12 11 36 36 H 1.09001 * 109.47220 * 60.00836 * 13 12 11 37 37 H 1.09004 * 109.47404 * 300.00568 * 14 13 12 38 38 H 1.09002 * 109.47023 * 60.00568 * 14 13 12 39 39 H 0.96995 * 120.00238 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3811 2.1198 -1.1009 5 6 2.7663 3.3279 -0.6528 6 7 2.6521 3.3372 0.6851 7 6 2.1980 2.1754 1.0893 8 7 1.9486 1.8147 2.4075 9 6 2.1687 2.6984 3.4011 10 8 2.5849 3.8082 3.1444 11 6 1.8977 2.3074 4.8310 12 6 2.2283 3.4830 5.7527 13 6 1.9525 3.0862 7.2043 14 6 2.2838 4.2616 8.1261 15 6 2.0127 3.8706 9.5560 16 1 1.6409 2.8828 9.7845 17 6 2.2384 4.7744 10.5725 18 7 2.0023 4.4330 11.8204 19 14 2.8808 6.4833 10.1772 20 1 1.7365 7.4021 9.9502 21 1 3.6968 6.9805 11.3140 22 1 3.7199 6.4259 8.9534 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.3612 1.7923 -2.1298 29 1 3.1129 4.1482 -1.2638 30 1 1.6160 0.9270 2.6129 31 1 0.8462 2.0427 4.9422 32 1 2.5180 1.4516 5.0975 33 1 3.2799 3.7473 5.6414 34 1 1.6083 4.3391 5.4863 35 1 0.9008 2.8222 7.3154 36 1 2.5722 2.2301 7.4710 37 1 3.3356 4.5253 8.0150 38 1 1.6644 5.1181 7.8596 39 1 2.1614 5.0687 12.5355 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591104850.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:19 Heat of formation + Delta-G solvation = -6.227655 kcal Electronic energy + Delta-G solvation = -19218.029683 eV Core-core repulsion = 16160.660182 eV Total energy + Delta-G solvation = -3057.369501 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.06909 -40.67532 -36.73325 -36.08866 -35.60770 -34.59715 -31.99265 -31.02690 -29.60200 -27.61205 -24.84961 -24.24852 -22.90277 -21.88314 -21.50037 -20.70161 -18.95791 -18.82363 -17.69786 -17.19227 -16.78571 -16.39475 -16.30439 -15.52965 -15.42694 -14.97863 -14.67825 -14.61876 -14.44542 -13.96947 -13.72339 -13.54831 -13.51032 -12.95661 -12.85783 -12.34666 -12.24905 -12.07426 -11.75255 -11.72428 -11.52210 -11.32722 -11.25943 -11.12236 -10.75137 -10.60155 -10.56378 -8.85498 -8.29140 -6.31665 0.88772 1.24236 1.35183 1.36735 1.49610 1.68639 2.29290 2.35910 2.36450 3.06569 3.53000 3.74000 3.93214 4.02760 4.07909 4.16083 4.32164 4.42177 4.53470 4.65647 4.65956 4.74951 4.76922 4.82221 4.85586 4.95061 5.14752 5.20072 5.22096 5.29972 5.32478 5.62294 5.67678 5.69877 5.77177 6.14470 6.28398 6.30857 6.76491 7.06665 7.33280 7.36959 8.87391 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.040253 B = 0.003012 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.438379 B = 9293.366588 C = 9874.554355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.091 3.909 3 N -0.467 5.467 4 C -0.037 4.037 5 C -0.056 4.056 6 N -0.533 5.533 7 C 0.409 3.591 8 N -0.629 5.629 9 C 0.511 3.489 10 O -0.528 6.528 11 C -0.119 4.119 12 C -0.100 4.100 13 C -0.092 4.092 14 C -0.019 4.019 15 C -0.528 4.528 16 H 0.040 0.960 17 C 0.005 3.995 18 N -0.950 5.950 19 Si 0.945 3.055 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.254 1.254 23 H 0.057 0.943 24 H 0.102 0.898 25 H 0.048 0.952 26 H 0.123 0.877 27 H 0.104 0.896 28 H 0.219 0.781 29 H 0.180 0.820 30 H 0.432 0.568 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.012 0.988 38 H 0.011 0.989 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.651 -14.249 -30.177 33.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.030 4.030 3 N -0.158 5.158 4 C -0.169 4.169 5 C -0.202 4.202 6 N -0.259 5.259 7 C 0.057 3.943 8 N -0.285 5.285 9 C 0.298 3.702 10 O -0.399 6.399 11 C -0.158 4.158 12 C -0.138 4.138 13 C -0.130 4.130 14 C -0.056 4.056 15 C -0.567 4.567 16 H 0.058 0.942 17 C -0.192 4.192 18 N -0.592 5.592 19 Si 0.769 3.231 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.178 1.178 23 H 0.076 0.924 24 H 0.121 0.879 25 H 0.067 0.933 26 H 0.141 0.859 27 H 0.122 0.878 28 H 0.236 0.764 29 H 0.197 0.803 30 H 0.273 0.727 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.031 0.969 38 H 0.030 0.970 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.203 -12.874 -29.620 32.372 hybrid contribution -0.082 -0.019 0.023 0.087 sum -2.285 -12.893 -29.597 32.364 Atomic orbital electron populations 1.22179 0.93499 1.04510 1.02406 1.22263 0.96048 0.77802 1.06873 1.45834 1.51402 1.13765 1.04776 1.23111 1.07803 0.92725 0.93276 1.22654 1.07997 0.99429 0.90131 1.70712 1.22104 1.19471 1.13611 1.19742 1.03476 0.87985 0.83049 1.42540 1.66733 1.18716 1.00465 1.21586 0.76515 0.84115 0.87980 1.90825 1.42589 1.22312 1.84184 1.21679 1.06460 1.00992 0.86699 1.21315 1.01349 0.97366 0.93807 1.21325 1.01207 0.98023 0.92408 1.19590 0.96090 0.96164 0.93767 1.21550 1.43158 1.00060 0.91884 0.94190 1.25960 0.95443 1.03056 0.94735 1.70050 1.51210 1.37520 1.00375 0.85730 0.79319 0.79615 0.78445 1.19292 1.20750 1.17750 0.92372 0.87920 0.93254 0.85872 0.87788 0.76439 0.80302 0.72745 0.85551 0.85529 0.93070 0.93025 0.92052 0.92070 0.96922 0.97032 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 10.24 71.98 0.74 -0.06 16 2 C 0.09 0.47 6.63 86.38 0.57 1.04 16 3 N -0.47 -7.18 2.79 -525.45 -1.47 -8.65 16 4 C -0.04 -0.57 11.59 82.95 0.96 0.39 16 5 C -0.06 -1.31 11.85 83.46 0.99 -0.32 16 6 N -0.53 -17.24 9.43 -197.67 -1.86 -19.10 16 7 C 0.41 10.04 8.43 260.20 2.19 12.23 16 8 N -0.63 -12.70 5.40 -311.96 -1.68 -14.38 16 9 C 0.51 13.95 7.79 87.66 0.68 14.64 16 10 O -0.53 -20.69 14.66 -3.02 -0.04 -20.73 16 11 C -0.12 -2.59 5.70 29.85 0.17 -2.42 16 12 C -0.10 -3.24 4.50 30.59 0.14 -3.10 16 13 C -0.09 -3.47 5.15 30.60 0.16 -3.31 16 14 C -0.02 -0.91 4.04 29.85 0.12 -0.79 16 15 C -0.53 -31.15 9.66 25.60 0.25 -30.90 16 16 H 0.04 2.53 7.99 -2.91 -0.02 2.50 16 17 C 0.00 0.28 5.47 84.66 0.46 0.75 16 18 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 19 Si 0.94 46.55 27.47 68.60 1.88 48.44 16 20 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 22 H -0.25 -11.98 6.54 99.48 0.65 -11.33 16 23 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 24 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16 25 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.12 0.06 8.14 -2.39 -0.02 0.04 16 27 H 0.10 0.23 7.72 -2.39 -0.02 0.21 16 28 H 0.22 1.24 8.06 -2.91 -0.02 1.22 16 29 H 0.18 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.43 4.37 8.11 -92.71 -0.75 3.62 16 31 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 34 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 35 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.01 0.62 7.20 -2.38 -0.02 0.60 16 38 H 0.01 0.55 7.57 -2.39 -0.02 0.54 16 39 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -87.64 329.84 4.78 -82.86 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: 0.22 Total: 3.87 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 7.43 Total: -11.86 kcal Atomic # 7 Polarization: -97.86 SS G_CDS: -4.72 Total: -102.57 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.04 Total: -20.73 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.88 Total: 48.44 kcal Total: -87.64 4.78 -82.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591104850.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.635 kcal (2) G-P(sol) polarization free energy of solvation -87.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds