Wall clock time and date at job start Mon Mar 30 2020 07:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46995 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99642 * 180.02562 * 11 10 9 13 13 O 1.21279 * 120.00300 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99773 * 180.02562 * 12 11 10 15 15 H 1.09001 * 109.46980 * 59.99839 * 14 12 11 16 16 C 1.52997 * 109.47084 * 299.99639 * 14 12 11 17 17 C 1.53002 * 109.47415 * 299.99965 * 16 14 12 18 18 C 1.52996 * 109.46972 * 300.00140 * 17 16 14 19 19 C 1.53000 * 109.47518 * 59.99713 * 18 17 16 20 20 C 1.53002 * 109.47233 * 300.00127 * 19 18 17 21 21 H 1.09000 * 109.46986 * 299.99797 * 20 19 18 22 22 C 1.52997 * 109.47415 * 179.97438 * 20 19 18 23 23 C 1.52996 * 117.49930 * 128.74552 * 22 20 19 24 24 C 1.53004 * 117.49629 * 60.08577 * 22 20 19 25 25 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 27 27 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 28 28 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 29 29 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 30 30 H 0.96998 * 120.00192 * 359.97438 * 11 10 9 31 31 H 1.09002 * 109.47045 * 60.00033 * 16 14 12 32 32 H 1.09000 * 109.47140 * 179.97438 * 16 14 12 33 33 H 1.08996 * 109.46550 * 59.99712 * 17 16 14 34 34 H 1.08992 * 109.46974 * 179.97438 * 17 16 14 35 35 H 1.09001 * 109.46997 * 179.97438 * 18 17 16 36 36 H 1.09000 * 109.47054 * 299.99700 * 18 17 16 37 37 H 1.09004 * 109.46724 * 59.99475 * 19 18 17 38 38 H 1.08992 * 109.47399 * 179.97438 * 19 18 17 39 39 H 1.09000 * 115.54667 * 274.41909 * 22 20 19 40 40 H 1.09002 * 117.49978 * 359.97438 * 23 22 20 41 41 H 1.08999 * 117.49879 * 145.02328 * 23 22 20 42 42 H 1.09003 * 117.49361 * 214.97878 * 24 22 20 43 43 H 1.08995 * 117.50197 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1869 -6.0979 -0.0007 13 8 3.3997 -6.0979 -0.0003 14 6 1.4334 -7.4030 -0.0020 15 1 0.8077 -7.4605 -0.8927 16 6 0.5525 -7.4845 1.2463 17 6 1.4308 -7.4038 2.4966 18 6 2.4250 -8.5667 2.4972 19 6 3.3060 -8.4853 1.2490 20 6 2.4277 -8.5660 -0.0013 21 1 1.8828 -9.5100 -0.0022 22 6 3.3086 -8.4840 -1.2495 23 6 3.1228 -9.5636 -2.3175 24 6 4.3735 -9.5668 -1.4350 25 1 -0.4851 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8896 28 1 2.8721 -3.6042 -0.8905 29 1 2.8721 -3.6043 0.8895 30 1 0.5430 -4.9308 -0.0011 31 1 -0.1558 -6.6560 1.2458 32 1 0.0072 -8.4283 1.2452 33 1 1.9757 -6.4599 2.4973 34 1 0.8031 -7.4614 3.3857 35 1 3.0510 -8.5090 3.3877 36 1 1.8800 -9.5107 2.4963 37 1 3.8509 -7.5413 1.2498 38 1 4.0146 -9.3135 1.2497 39 1 3.5505 -7.4767 -1.5888 40 1 2.3732 -10.3327 -2.1307 41 1 3.2428 -9.2668 -3.3594 42 1 5.3159 -9.2720 -1.8968 43 1 4.4469 -10.3373 -0.6676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592618273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:43 Heat of formation + Delta-G solvation = -48.675269 kcal Electronic energy + Delta-G solvation = -20746.342803 eV Core-core repulsion = 17790.672978 eV Total energy + Delta-G solvation = -2955.669825 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.56070 -37.66906 -36.15091 -34.80477 -32.88416 -31.27490 -30.36407 -29.28378 -25.07919 -23.47487 -23.26707 -22.24853 -21.12307 -20.64675 -20.09052 -19.12786 -16.54611 -16.15069 -15.99006 -15.56113 -14.91017 -14.50915 -14.44317 -14.19658 -13.92170 -13.49023 -13.21129 -12.74294 -12.54811 -12.30786 -12.06425 -11.95576 -11.64043 -11.49303 -11.19680 -11.05547 -10.97920 -10.69302 -10.61756 -10.43861 -10.37887 -10.17608 -9.93063 -9.70560 -9.61082 -9.36043 -8.92202 -8.50207 -8.30142 -6.09387 -4.12165 3.08716 3.29218 3.35377 3.39360 3.74762 3.88982 4.41610 4.52587 4.67270 4.79414 4.99570 5.03061 5.05290 5.21447 5.27712 5.36237 5.39770 5.48479 5.56496 5.57514 5.62250 5.66512 5.77203 5.85303 5.95429 5.98791 6.12372 6.19031 6.24526 6.27903 6.32632 6.36899 6.38367 6.49955 6.68313 6.77354 7.03012 7.52679 7.62498 7.89071 8.08726 8.28894 8.74815 8.94084 9.52737 11.02216 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.027313 B = 0.004058 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.915866 B = 6898.716937 C = 7334.998451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.123 3.877 11 N -0.723 5.723 12 C 0.513 3.487 13 O -0.542 6.542 14 C -0.104 4.104 15 H 0.093 0.907 16 C -0.110 4.110 17 C -0.124 4.124 18 C -0.117 4.117 19 C -0.127 4.127 20 C -0.029 4.029 21 H 0.068 0.932 22 C -0.136 4.136 23 C -0.191 4.191 24 C -0.179 4.179 25 H 0.262 0.738 26 H 0.021 0.979 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.396 0.604 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.167 -19.526 0.943 19.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.373 5.373 12 C 0.299 3.701 13 O -0.420 6.420 14 C -0.126 4.126 15 H 0.111 0.889 16 C -0.148 4.148 17 C -0.161 4.161 18 C -0.155 4.155 19 C -0.164 4.164 20 C -0.048 4.048 21 H 0.087 0.913 22 C -0.154 4.154 23 C -0.228 4.228 24 C -0.216 4.216 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.229 0.771 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.074 0.926 39 H 0.135 0.865 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.893 -19.374 0.948 19.489 hybrid contribution -0.142 0.976 -0.089 0.990 sum 1.751 -18.398 0.859 18.501 Atomic orbital electron populations 1.69950 1.06086 1.26853 1.50439 1.24988 0.94877 0.99380 0.94998 0.86527 0.79859 0.83058 0.78203 1.20562 1.21164 1.19732 1.21057 0.93217 0.90443 1.51274 0.92314 1.19315 0.94214 0.91197 0.97755 1.21673 0.95979 0.81746 1.00575 1.46377 1.10432 1.06612 1.73866 1.20432 0.88206 0.85317 0.76103 1.90579 1.13939 1.87418 1.50110 1.21381 0.97668 0.93531 1.00006 0.88892 1.21522 0.97257 1.02553 0.93423 1.21568 0.97755 0.99481 0.97328 1.21534 0.97694 0.97953 0.98301 1.21830 0.97789 1.04273 0.92487 1.20452 0.94314 0.96170 0.93880 0.91331 1.22531 1.00522 0.95955 0.96437 1.23046 1.00651 1.02603 0.96522 1.22843 0.93603 1.02296 1.02836 0.92859 0.96031 0.96010 0.92759 0.92734 0.77092 0.91240 0.91143 0.91569 0.91936 0.92284 0.92622 0.88526 0.92648 0.86463 0.89279 0.89292 0.89243 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.12 2.59 5.61 -4.04 -0.02 2.56 16 11 N -0.72 -12.35 5.45 -60.29 -0.33 -12.68 16 12 C 0.51 8.26 5.18 -10.98 -0.06 8.20 16 13 O -0.54 -10.27 11.70 5.56 0.07 -10.20 16 14 C -0.10 -1.27 2.55 -91.77 -0.23 -1.50 16 15 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 16 C -0.11 -1.17 5.36 -26.73 -0.14 -1.31 16 17 C -0.12 -1.43 5.70 -26.73 -0.15 -1.58 16 18 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 19 C -0.13 -1.57 4.77 -26.73 -0.13 -1.70 16 20 C -0.03 -0.35 2.09 -90.62 -0.19 -0.53 16 21 H 0.07 0.71 7.90 -51.93 -0.41 0.30 16 22 C -0.14 -1.72 4.50 -90.62 -0.41 -2.13 16 23 C -0.19 -2.02 10.18 -26.69 -0.27 -2.29 16 24 C -0.18 -1.98 9.74 -26.69 -0.26 -2.24 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.40 5.98 7.89 -40.82 -0.32 5.65 16 31 H 0.07 0.72 7.56 -51.93 -0.39 0.33 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.94 7.22 -51.93 -0.37 0.56 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 1.51 5.51 -51.93 -0.29 1.22 16 38 H 0.05 0.64 7.29 -51.93 -0.38 0.26 16 39 H 0.12 1.82 6.10 -51.93 -0.32 1.51 16 40 H 0.09 0.83 8.05 -51.93 -0.42 0.41 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.09 0.91 7.61 -51.93 -0.40 0.51 16 LS Contribution 333.29 15.07 5.02 5.02 Total: -1.00 -29.79 333.29 -9.59 -39.38 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.49 Total: 4.49 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -2.58 Total: -16.99 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.41 Total: -38.06 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.07 Total: -10.20 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.79 -9.59 -39.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592618273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.295 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds