Wall clock time and date at job start Mon Mar 30 2020 07:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46995 * 180.02562 * 10 9 7 12 12 C 1.34775 * 119.99642 * 180.02562 * 11 10 9 13 13 O 1.21279 * 120.00300 * 359.97438 * 12 11 10 14 14 C 1.50703 * 119.99773 * 180.02562 * 12 11 10 15 15 H 1.09001 * 109.46980 * 59.99839 * 14 12 11 16 16 C 1.52997 * 109.47084 * 299.99639 * 14 12 11 17 17 C 1.53002 * 109.47415 * 299.99965 * 16 14 12 18 18 C 1.52996 * 109.46972 * 300.00140 * 17 16 14 19 19 C 1.53000 * 109.47518 * 59.99713 * 18 17 16 20 20 C 1.53002 * 109.47233 * 300.00127 * 19 18 17 21 21 H 1.09000 * 109.46986 * 299.99797 * 20 19 18 22 22 C 1.52997 * 109.47415 * 179.97438 * 20 19 18 23 23 C 1.52996 * 117.49930 * 128.74552 * 22 20 19 24 24 C 1.53004 * 117.49629 * 60.08577 * 22 20 19 25 25 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 27 27 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 28 28 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 29 29 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 30 30 H 0.96998 * 120.00192 * 359.97438 * 11 10 9 31 31 H 1.09002 * 109.47045 * 60.00033 * 16 14 12 32 32 H 1.09000 * 109.47140 * 179.97438 * 16 14 12 33 33 H 1.08996 * 109.46550 * 59.99712 * 17 16 14 34 34 H 1.08992 * 109.46974 * 179.97438 * 17 16 14 35 35 H 1.09001 * 109.46997 * 179.97438 * 18 17 16 36 36 H 1.09000 * 109.47054 * 299.99700 * 18 17 16 37 37 H 1.09004 * 109.46724 * 59.99475 * 19 18 17 38 38 H 1.08992 * 109.47399 * 179.97438 * 19 18 17 39 39 H 1.09000 * 115.54667 * 274.41909 * 22 20 19 40 40 H 1.09002 * 117.49978 * 359.97438 * 23 22 20 41 41 H 1.08999 * 117.49879 * 145.02328 * 23 22 20 42 42 H 1.09003 * 117.49361 * 214.97878 * 24 22 20 43 43 H 1.08995 * 117.50197 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.1869 -6.0979 -0.0007 13 8 3.3997 -6.0979 -0.0003 14 6 1.4334 -7.4030 -0.0020 15 1 0.8077 -7.4605 -0.8927 16 6 0.5525 -7.4845 1.2463 17 6 1.4308 -7.4038 2.4966 18 6 2.4250 -8.5667 2.4972 19 6 3.3060 -8.4853 1.2490 20 6 2.4277 -8.5660 -0.0013 21 1 1.8828 -9.5100 -0.0022 22 6 3.3086 -8.4840 -1.2495 23 6 3.1228 -9.5636 -2.3175 24 6 4.3735 -9.5668 -1.4350 25 1 -0.4851 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8896 28 1 2.8721 -3.6042 -0.8905 29 1 2.8721 -3.6043 0.8895 30 1 0.5430 -4.9308 -0.0011 31 1 -0.1558 -6.6560 1.2458 32 1 0.0072 -8.4283 1.2452 33 1 1.9757 -6.4599 2.4973 34 1 0.8031 -7.4614 3.3857 35 1 3.0510 -8.5090 3.3877 36 1 1.8800 -9.5107 2.4963 37 1 3.8509 -7.5413 1.2498 38 1 4.0146 -9.3135 1.2497 39 1 3.5505 -7.4767 -1.5888 40 1 2.3732 -10.3327 -2.1307 41 1 3.2428 -9.2668 -3.3594 42 1 5.3159 -9.2720 -1.8968 43 1 4.4469 -10.3373 -0.6676 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592618273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:35:43 Heat of formation + Delta-G solvation = -65.300566 kcal Electronic energy + Delta-G solvation = -20747.063730 eV Core-core repulsion = 17790.672978 eV Total energy + Delta-G solvation = -2956.390752 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.70290 -38.83871 -37.08235 -36.48790 -34.82229 -32.49606 -31.33741 -30.91540 -26.92127 -24.60870 -24.28412 -23.21617 -22.77479 -21.81285 -21.05109 -20.37240 -18.53371 -17.36640 -17.17453 -16.75204 -16.47615 -16.24026 -15.71155 -15.24982 -15.01851 -14.67788 -14.48531 -14.28841 -13.90824 -13.48307 -13.23280 -13.04971 -12.97057 -12.91436 -12.57543 -12.52147 -12.34685 -12.21665 -11.88505 -11.73125 -11.56485 -11.42267 -11.27842 -11.24920 -10.82376 -10.61164 -10.54504 -10.25194 -9.88425 -8.25272 -6.35907 1.40396 1.40790 1.52318 1.80096 2.31771 2.49586 2.99354 3.09286 3.57487 3.75677 3.84184 4.10748 4.13466 4.16021 4.19685 4.42972 4.47307 4.50536 4.51532 4.60313 4.66496 4.68131 4.77871 4.80894 4.84966 4.91089 5.00787 5.09321 5.14623 5.27753 5.30880 5.31514 5.33271 5.38839 5.43039 5.51269 5.53070 5.57586 5.75853 5.81607 6.15986 6.73512 6.77532 7.33537 7.42697 8.86555 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.027313 B = 0.004058 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.915866 B = 6898.716937 C = 7334.998451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.056 0.944 9 C 0.024 3.976 10 C 0.144 3.856 11 N -0.722 5.722 12 C 0.511 3.489 13 O -0.572 6.572 14 C -0.097 4.097 15 H 0.112 0.888 16 C -0.107 4.107 17 C -0.126 4.126 18 C -0.113 4.113 19 C -0.125 4.125 20 C -0.024 4.024 21 H 0.098 0.902 22 C -0.157 4.157 23 C -0.174 4.174 24 C -0.179 4.179 25 H 0.266 0.734 26 H 0.007 0.993 27 H 0.007 0.993 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.406 0.594 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.028 0.972 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.374 -21.344 1.012 21.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.788 3.212 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.074 0.926 9 C -0.013 4.013 10 C 0.020 3.980 11 N -0.373 5.373 12 C 0.299 3.701 13 O -0.452 6.452 14 C -0.118 4.118 15 H 0.130 0.870 16 C -0.144 4.144 17 C -0.163 4.163 18 C -0.151 4.151 19 C -0.163 4.163 20 C -0.043 4.043 21 H 0.117 0.883 22 C -0.176 4.176 23 C -0.210 4.210 24 C -0.216 4.216 25 H 0.075 0.925 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.242 0.758 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.047 0.953 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.129 0.871 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.089 -21.214 1.016 21.266 hybrid contribution 0.149 1.522 -0.115 1.534 sum 1.239 -19.692 0.900 19.751 Atomic orbital electron populations 1.70050 1.07507 1.28015 1.50951 1.25850 0.95786 1.03020 0.94353 0.85465 0.78628 0.78529 0.78554 1.19727 1.20355 1.19178 1.21464 0.93473 0.92067 1.51640 0.92570 1.19114 0.94196 0.91825 0.96195 1.21111 0.94910 0.82734 0.99214 1.46224 1.10866 1.05686 1.74542 1.21265 0.88070 0.86177 0.74578 1.90584 1.15678 1.87918 1.51037 1.21446 0.97783 0.90758 1.01817 0.86977 1.21572 0.96768 1.04405 0.91676 1.21582 0.98025 0.98003 0.98719 1.21521 0.97431 0.98768 0.97340 1.21759 0.98214 1.02399 0.93908 1.20480 0.93996 0.96975 0.92850 0.88347 1.22384 1.02387 0.94762 0.98030 1.23124 1.00433 1.01523 0.95961 1.22908 0.93502 1.01802 1.03395 0.92502 0.97446 0.97421 0.94079 0.94148 0.75812 0.91091 0.87841 0.95280 0.90422 0.92488 0.89944 0.92549 0.91808 0.90237 0.87079 0.89272 0.89908 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.57 13.29 21.45 0.28 -54.29 16 2 C 0.01 0.50 5.46 84.65 0.46 0.96 16 3 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.55 -31.11 9.11 25.60 0.23 -30.87 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 9 C 0.02 1.24 5.09 29.85 0.15 1.39 16 10 C 0.14 6.36 5.61 86.38 0.48 6.84 16 11 N -0.72 -25.32 5.45 -463.06 -2.52 -27.84 16 12 C 0.51 16.72 5.18 87.66 0.45 17.18 16 13 O -0.57 -22.73 11.70 -3.03 -0.04 -22.77 16 14 C -0.10 -2.19 2.55 -11.54 -0.03 -2.22 16 15 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 16 C -0.11 -1.98 5.36 30.59 0.16 -1.81 16 17 C -0.13 -2.73 5.70 30.59 0.17 -2.55 16 18 C -0.11 -2.23 5.92 30.59 0.18 -2.05 16 19 C -0.13 -2.98 4.77 30.60 0.15 -2.83 16 20 C -0.02 -0.52 2.09 -10.79 -0.02 -0.54 16 21 H 0.10 1.58 7.90 -2.39 -0.02 1.56 16 22 C -0.16 -3.83 4.50 -10.79 -0.05 -3.88 16 23 C -0.17 -3.24 10.18 30.62 0.31 -2.93 16 24 C -0.18 -3.71 9.74 30.62 0.30 -3.41 16 25 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 26 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.41 12.38 7.89 -92.71 -0.73 11.65 16 31 H 0.07 1.31 7.56 -2.39 -0.02 1.29 16 32 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.03 0.83 7.22 -2.39 -0.02 0.82 16 34 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.82 5.51 -2.39 -0.01 1.81 16 38 H 0.06 1.37 7.29 -2.39 -0.02 1.35 16 39 H 0.08 2.56 6.10 -2.39 -0.01 2.55 16 40 H 0.11 1.61 8.05 -2.39 -0.02 1.59 16 41 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.10 1.84 7.61 -2.39 -0.02 1.82 16 Total: -1.00 -66.08 333.29 2.96 -63.12 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.25 Total: 22.49 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 2.96 Total: -26.73 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -2.24 Total: -82.12 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.04 Total: -22.77 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -66.08 2.96 -63.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592618273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.183 kcal (2) G-P(sol) polarization free energy of solvation -66.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds