Wall clock time and date at job start Mon Mar 30 2020 07:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.47483 * 269.99827 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00341 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00164 * 3 2 1 7 7 C 1.37871 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47646 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47600 * 180.02562 * 10 9 7 12 12 C 1.52990 * 109.47353 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47398 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99488 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00290 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99828 * 180.27728 * 15 13 12 17 17 H 1.09006 * 109.61641 * 34.72021 * 16 15 13 18 18 C 1.53297 * 109.61550 * 274.36177 * 16 15 13 19 19 C 1.52771 * 108.63902 * 165.99808 * 18 16 15 20 20 C 1.52717 * 110.28008 * 54.24733 * 19 18 16 21 21 H 1.09002 * 114.90915 * 127.95914 * 20 19 18 22 22 C 1.53645 * 116.03292 * 269.91767 * 20 19 18 23 23 C 1.52068 * 120.52285 * 338.65038 * 20 19 18 24 24 H 1.08992 * 115.31688 * 148.98410 * 23 20 19 25 25 C 1.52075 * 120.02230 * 5.28406 * 23 20 19 26 26 H 0.97005 * 120.00032 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 28 28 H 1.09005 * 109.46634 * 299.99918 * 9 7 2 29 29 H 1.08999 * 109.46950 * 59.99410 * 10 9 7 30 30 H 1.09003 * 109.46788 * 300.00484 * 10 9 7 31 31 H 1.08998 * 109.47142 * 59.99377 * 11 10 9 32 32 H 1.09011 * 109.46657 * 299.99934 * 11 10 9 33 33 H 1.08998 * 109.47508 * 59.99597 * 12 11 10 34 34 H 1.09002 * 109.47337 * 299.99883 * 12 11 10 35 35 H 0.97001 * 119.99727 * 359.97438 * 15 13 12 36 36 H 1.08999 * 109.62368 * 285.55640 * 18 16 15 37 37 H 1.09006 * 109.61904 * 46.09862 * 18 16 15 38 38 H 1.08999 * 109.20068 * 294.06589 * 19 18 16 39 39 H 1.08996 * 109.39368 * 174.55540 * 19 18 16 40 40 H 1.09005 * 117.53871 * 4.30514 * 22 20 19 41 41 H 1.09001 * 117.59970 * 219.03644 * 22 20 19 42 42 H 1.08998 * 109.27026 * 218.04262 * 25 23 20 43 43 H 1.09002 * 109.27103 * 98.56420 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5515 -2.6366 -0.0001 12 6 6.0615 -4.0790 -0.0022 13 6 7.5685 -4.0791 -0.0016 14 8 8.1749 -3.0287 -0.0002 15 7 8.2424 -5.2463 -0.0037 16 6 9.7074 -5.2463 0.0030 17 1 10.0706 -4.4049 0.5932 18 6 10.2286 -5.1301 -1.4339 19 6 11.7153 -4.7819 -1.3874 20 6 12.4699 -5.7958 -0.5301 21 1 13.3397 -6.2451 -1.0093 22 6 12.5866 -5.4606 0.9648 23 6 11.7330 -6.6342 0.5026 24 1 12.1494 -7.6255 0.6812 25 6 10.2179 -6.5549 0.6063 26 1 -0.4850 0.8401 0.0004 27 1 3.8745 -0.6808 0.8905 28 1 3.8752 -0.6796 -0.8895 29 1 3.6585 -3.1494 -0.8920 30 1 3.6578 -3.1513 0.8879 31 1 5.9142 -2.1238 0.8907 32 1 5.9156 -2.1216 -0.8893 33 1 5.6989 -4.5914 -0.8933 34 1 5.6975 -4.5944 0.8866 35 1 7.7574 -6.0863 -0.0052 36 1 10.0945 -6.0807 -1.9500 37 1 9.6832 -4.3457 -1.9588 38 1 11.8372 -3.7863 -0.9606 39 1 12.1211 -4.7912 -2.3990 40 1 12.0687 -4.5712 1.3238 41 1 13.5300 -5.6882 1.4612 42 1 9.9260 -6.6053 1.6553 43 1 9.7762 -7.3947 0.0698 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592736654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:14 Heat of formation + Delta-G solvation = -51.950107 kcal Electronic energy + Delta-G solvation = -19593.533380 eV Core-core repulsion = 16637.721547 eV Total energy + Delta-G solvation = -2955.811832 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49019 -39.05897 -35.35183 -34.80222 -32.61722 -32.06001 -30.81498 -29.72966 -26.07555 -24.73456 -23.09956 -21.91338 -21.33719 -20.34570 -19.99873 -18.84109 -17.14820 -16.77519 -16.45635 -15.74260 -15.22945 -14.79726 -14.58845 -14.17243 -14.01449 -13.84984 -13.68512 -12.87612 -12.63253 -12.58187 -12.33479 -12.13221 -11.90701 -11.72791 -11.57741 -11.36309 -11.08934 -10.87286 -10.71321 -10.51450 -10.19080 -10.10966 -9.92133 -9.77971 -9.62644 -9.38135 -9.14575 -9.09893 -8.47783 -5.99015 -3.96379 2.70344 3.05268 3.36701 3.37307 3.43596 3.49903 4.17100 4.35925 4.46886 4.51641 4.64298 4.67313 4.85987 4.91081 5.05053 5.13392 5.21991 5.25290 5.32328 5.36127 5.37133 5.46134 5.53347 5.66780 5.74020 5.79747 5.82165 5.84945 5.96528 6.03356 6.05921 6.18416 6.36896 6.45630 6.70906 6.84993 7.01510 7.40296 7.43466 7.53158 7.86555 8.25502 8.60054 9.06017 9.64470 11.14498 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.046215 B = 0.002790 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.711961 B =10032.175351 C =10320.735097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.103 4.103 11 C -0.106 4.106 12 C -0.139 4.139 13 C 0.513 3.487 14 O -0.537 6.537 15 N -0.735 5.735 16 C 0.142 3.858 17 H 0.088 0.912 18 C -0.128 4.128 19 C -0.088 4.088 20 C -0.149 4.149 21 H 0.102 0.898 22 C -0.183 4.183 23 C -0.136 4.136 24 H 0.102 0.898 25 C -0.095 4.095 26 H 0.262 0.738 27 H 0.015 0.985 28 H 0.011 0.989 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.399 0.601 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.210 -16.498 -0.315 30.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.144 4.144 12 C -0.179 4.179 13 C 0.300 3.700 14 O -0.413 6.413 15 N -0.387 5.387 16 C 0.038 3.962 17 H 0.106 0.894 18 C -0.166 4.166 19 C -0.126 4.126 20 C -0.167 4.167 21 H 0.120 0.880 22 C -0.220 4.220 23 C -0.155 4.155 24 H 0.120 0.880 25 C -0.133 4.133 26 H 0.072 0.928 27 H 0.034 0.966 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.233 0.767 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.092 0.908 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 25.490 -15.597 -0.305 29.885 hybrid contribution 0.175 0.380 -0.011 0.418 sum 25.665 -15.217 -0.316 29.839 Atomic orbital electron populations 1.69924 1.06304 1.26805 1.51543 1.25043 0.94738 0.99231 0.94634 0.86771 0.80436 0.83540 0.78535 1.20320 1.21472 1.18892 1.21188 0.89685 0.94374 1.50437 0.91117 1.19578 0.96887 0.92532 0.96305 1.21475 0.91746 0.99888 1.00907 1.21474 0.97158 0.92901 1.02856 1.21778 0.90303 1.01686 1.04158 1.21081 0.90846 0.83232 0.74809 1.90695 1.70620 1.31327 1.48624 1.46160 1.06647 1.09004 1.76864 1.20950 0.79964 0.98609 0.96718 0.89415 1.21932 0.95750 1.02180 0.96776 1.21004 0.94194 0.97905 0.99517 1.22276 1.01681 1.01642 0.91138 0.87964 1.23186 1.01568 0.99900 0.97360 1.21719 0.93500 0.96423 1.03863 0.88005 1.21082 0.93465 0.97141 1.01576 0.92834 0.96623 0.97071 0.92882 0.92864 0.91832 0.91845 0.89030 0.89033 0.76723 0.91642 0.91105 0.91284 0.91287 0.88490 0.88875 0.90807 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.56 13.96 55.43 0.77 -27.79 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.52 27.47 -169.99 -4.67 17.85 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 7 C -0.52 -15.20 9.66 -34.44 -0.33 -15.54 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 10 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 11 C -0.11 -1.80 4.50 -26.74 -0.12 -1.92 16 12 C -0.14 -1.76 5.70 -27.89 -0.16 -1.92 16 13 C 0.51 6.83 7.79 -10.98 -0.09 6.74 16 14 O -0.54 -9.39 15.65 5.55 0.09 -9.31 16 15 N -0.73 -7.03 5.09 -53.71 -0.27 -7.30 16 16 C 0.14 1.32 2.20 -67.84 -0.15 1.17 16 17 H 0.09 1.02 6.56 -51.93 -0.34 0.68 16 18 C -0.13 -1.16 5.52 -26.69 -0.15 -1.30 16 19 C -0.09 -0.71 5.83 -26.99 -0.16 -0.87 16 20 C -0.15 -1.05 6.19 -90.90 -0.56 -1.61 16 21 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 22 C -0.18 -1.30 9.66 -26.75 -0.26 -1.56 16 23 C -0.14 -0.91 6.00 -91.92 -0.55 -1.46 16 24 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 25 C -0.09 -0.65 5.42 -27.26 -0.15 -0.79 16 26 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 27 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 28 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 32 H 0.06 1.14 8.10 -51.92 -0.42 0.72 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.40 2.66 8.60 -40.82 -0.35 2.30 16 36 H 0.06 0.53 8.05 -51.93 -0.42 0.11 16 37 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 38 H 0.07 0.63 8.06 -51.93 -0.42 0.21 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.10 0.79 7.27 -51.93 -0.38 0.41 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 341.40 15.07 5.14 5.14 Total: -1.00 -33.70 341.40 -9.71 -43.40 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -7.75 Total: -2.08 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -3.02 Total: -19.92 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.50 Total: -35.09 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.70 -9.71 -43.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592736654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.549 kcal (2) G-P(sol) polarization free energy of solvation -33.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds