Wall clock time and date at job start Mon Mar 30 2020 07:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.47483 * 269.99827 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00341 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00164 * 3 2 1 7 7 C 1.37871 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47646 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47600 * 180.02562 * 10 9 7 12 12 C 1.52990 * 109.47353 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47398 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99488 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00290 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99828 * 180.27728 * 15 13 12 17 17 H 1.09006 * 109.61641 * 34.72021 * 16 15 13 18 18 C 1.53297 * 109.61550 * 274.36177 * 16 15 13 19 19 C 1.52771 * 108.63902 * 165.99808 * 18 16 15 20 20 C 1.52717 * 110.28008 * 54.24733 * 19 18 16 21 21 H 1.09002 * 114.90915 * 127.95914 * 20 19 18 22 22 C 1.53645 * 116.03292 * 269.91767 * 20 19 18 23 23 C 1.52068 * 120.52285 * 338.65038 * 20 19 18 24 24 H 1.08992 * 115.31688 * 148.98410 * 23 20 19 25 25 C 1.52075 * 120.02230 * 5.28406 * 23 20 19 26 26 H 0.97005 * 120.00032 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 28 28 H 1.09005 * 109.46634 * 299.99918 * 9 7 2 29 29 H 1.08999 * 109.46950 * 59.99410 * 10 9 7 30 30 H 1.09003 * 109.46788 * 300.00484 * 10 9 7 31 31 H 1.08998 * 109.47142 * 59.99377 * 11 10 9 32 32 H 1.09011 * 109.46657 * 299.99934 * 11 10 9 33 33 H 1.08998 * 109.47508 * 59.99597 * 12 11 10 34 34 H 1.09002 * 109.47337 * 299.99883 * 12 11 10 35 35 H 0.97001 * 119.99727 * 359.97438 * 15 13 12 36 36 H 1.08999 * 109.62368 * 285.55640 * 18 16 15 37 37 H 1.09006 * 109.61904 * 46.09862 * 18 16 15 38 38 H 1.08999 * 109.20068 * 294.06589 * 19 18 16 39 39 H 1.08996 * 109.39368 * 174.55540 * 19 18 16 40 40 H 1.09005 * 117.53871 * 4.30514 * 22 20 19 41 41 H 1.09001 * 117.59970 * 219.03644 * 22 20 19 42 42 H 1.08998 * 109.27026 * 218.04262 * 25 23 20 43 43 H 1.09002 * 109.27103 * 98.56420 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5515 -2.6366 -0.0001 12 6 6.0615 -4.0790 -0.0022 13 6 7.5685 -4.0791 -0.0016 14 8 8.1749 -3.0287 -0.0002 15 7 8.2424 -5.2463 -0.0037 16 6 9.7074 -5.2463 0.0030 17 1 10.0706 -4.4049 0.5932 18 6 10.2286 -5.1301 -1.4339 19 6 11.7153 -4.7819 -1.3874 20 6 12.4699 -5.7958 -0.5301 21 1 13.3397 -6.2451 -1.0093 22 6 12.5866 -5.4606 0.9648 23 6 11.7330 -6.6342 0.5026 24 1 12.1494 -7.6255 0.6812 25 6 10.2179 -6.5549 0.6063 26 1 -0.4850 0.8401 0.0004 27 1 3.8745 -0.6808 0.8905 28 1 3.8752 -0.6796 -0.8895 29 1 3.6585 -3.1494 -0.8920 30 1 3.6578 -3.1513 0.8879 31 1 5.9142 -2.1238 0.8907 32 1 5.9156 -2.1216 -0.8893 33 1 5.6989 -4.5914 -0.8933 34 1 5.6975 -4.5944 0.8866 35 1 7.7574 -6.0863 -0.0052 36 1 10.0945 -6.0807 -1.9500 37 1 9.6832 -4.3457 -1.9588 38 1 11.8372 -3.7863 -0.9606 39 1 12.1211 -4.7912 -2.3990 40 1 12.0687 -4.5712 1.3238 41 1 13.5300 -5.6882 1.4612 42 1 9.9260 -6.6053 1.6553 43 1 9.7762 -7.3947 0.0698 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592736654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:14 Heat of formation + Delta-G solvation = -72.569350 kcal Electronic energy + Delta-G solvation = -19594.427497 eV Core-core repulsion = 16637.721547 eV Total energy + Delta-G solvation = -2956.705950 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.29439 -39.91737 -36.74623 -35.91207 -34.60346 -32.90885 -31.97248 -30.94389 -27.67383 -25.50856 -24.23478 -23.06951 -22.05068 -21.70713 -21.32798 -19.53160 -18.85680 -17.85158 -17.61639 -16.88393 -16.37134 -15.98767 -15.69276 -15.37096 -14.96066 -14.90876 -14.61512 -14.54925 -13.89429 -13.75089 -13.52172 -13.40889 -13.12735 -12.85687 -12.60700 -12.33858 -12.24391 -12.07248 -11.99953 -11.75840 -11.57722 -11.51094 -11.34698 -11.26492 -10.76447 -10.75513 -10.74132 -10.64552 -10.00537 -8.30004 -6.32991 1.34406 1.35840 1.48822 1.67660 2.20069 2.35627 2.82200 3.05363 3.57026 3.77259 3.84106 3.92421 4.02882 4.06018 4.08805 4.15949 4.24446 4.46331 4.50622 4.58491 4.60674 4.65770 4.74680 4.78145 4.87064 4.91495 4.96225 5.05259 5.13780 5.14870 5.19390 5.22752 5.23372 5.27887 5.34589 5.36879 5.56714 5.61558 5.65621 5.68595 6.29321 6.60265 6.74918 7.31585 7.32093 8.86579 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.046215 B = 0.002790 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.711961 B =10032.175351 C =10320.735097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.253 1.253 7 C -0.530 4.530 8 H 0.037 0.963 9 C -0.017 4.017 10 C -0.093 4.093 11 C -0.097 4.097 12 C -0.131 4.131 13 C 0.512 3.488 14 O -0.587 6.587 15 N -0.716 5.716 16 C 0.141 3.859 17 H 0.059 0.941 18 C -0.124 4.124 19 C -0.089 4.089 20 C -0.151 4.151 21 H 0.117 0.883 22 C -0.192 4.192 23 C -0.130 4.130 24 H 0.122 0.878 25 C -0.089 4.089 26 H 0.266 0.734 27 H 0.013 0.987 28 H 0.012 0.988 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.417 0.583 36 H 0.082 0.918 37 H 0.043 0.957 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.024 -18.158 -0.389 32.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.177 1.177 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.055 4.055 10 C -0.131 4.131 11 C -0.136 4.136 12 C -0.171 4.171 13 C 0.300 3.700 14 O -0.467 6.467 15 N -0.368 5.368 16 C 0.036 3.964 17 H 0.077 0.923 18 C -0.163 4.163 19 C -0.127 4.127 20 C -0.169 4.169 21 H 0.135 0.865 22 C -0.229 4.229 23 C -0.149 4.149 24 H 0.139 0.861 25 C -0.127 4.127 26 H 0.075 0.925 27 H 0.031 0.969 28 H 0.030 0.970 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.254 0.746 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.123 0.877 42 H 0.096 0.904 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 27.311 -17.320 -0.379 32.342 hybrid contribution -0.433 0.837 0.009 0.943 sum 26.879 -16.483 -0.370 31.532 Atomic orbital electron populations 1.70060 1.08098 1.28081 1.52895 1.25990 0.95625 1.03386 0.94303 0.85695 0.79363 0.78648 0.79181 1.19212 1.20682 1.17686 1.21544 0.92091 0.93232 1.49941 0.94420 1.19580 0.93919 0.95935 0.96038 1.21337 0.93704 0.96697 1.01369 1.21274 0.94807 0.95860 1.01626 1.21682 0.89827 0.99009 1.06560 1.21177 0.91127 0.83414 0.74310 1.90685 1.71496 1.33256 1.51258 1.45985 1.06980 1.08794 1.75014 1.20981 0.79506 0.99198 0.96696 0.92325 1.21882 0.95994 1.02008 0.96367 1.20987 0.93931 0.97461 1.00297 1.22300 1.02159 1.01552 0.90867 0.86510 1.23191 1.02273 0.99807 0.97673 1.21830 0.93225 0.96975 1.02870 0.86053 1.21074 0.93731 0.96037 1.01856 0.92505 0.96859 0.96970 0.92398 0.92424 0.93172 0.93120 0.86593 0.86579 0.74573 0.89924 0.93806 0.93190 0.90323 0.90288 0.87718 0.90430 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.87 13.96 21.44 0.30 -60.57 16 2 C 0.00 0.22 5.47 84.65 0.46 0.68 16 3 Si 0.95 46.38 27.47 68.60 1.88 48.27 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 6 H -0.25 -11.82 6.54 99.48 0.65 -11.17 16 7 C -0.53 -31.49 9.66 25.60 0.25 -31.25 16 8 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16 9 C -0.02 -0.85 4.04 29.85 0.12 -0.73 16 10 C -0.09 -3.63 5.15 30.59 0.16 -3.47 16 11 C -0.10 -3.22 4.50 30.59 0.14 -3.08 16 12 C -0.13 -3.03 5.70 29.85 0.17 -2.86 16 13 C 0.51 13.06 7.79 87.66 0.68 13.74 16 14 O -0.59 -20.82 15.65 -3.04 -0.05 -20.87 16 15 N -0.72 -12.35 5.09 -442.24 -2.25 -14.60 16 16 C 0.14 2.45 2.20 45.05 0.10 2.55 16 17 H 0.06 1.40 6.56 -2.38 -0.02 1.38 16 18 C -0.12 -2.13 5.52 30.62 0.17 -1.97 16 19 C -0.09 -1.39 5.83 30.42 0.18 -1.21 16 20 C -0.15 -1.85 6.19 -10.98 -0.07 -1.92 16 21 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 22 C -0.19 -2.52 9.66 30.58 0.30 -2.23 16 23 C -0.13 -1.40 6.00 -11.64 -0.07 -1.47 16 24 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 25 C -0.09 -0.98 5.42 30.25 0.16 -0.82 16 26 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 27 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 28 H 0.01 0.59 7.57 -2.38 -0.02 0.57 16 29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 32 H 0.05 1.79 8.10 -2.38 -0.02 1.77 16 33 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.42 4.20 8.60 -92.71 -0.80 3.40 16 36 H 0.08 1.13 8.05 -2.39 -0.02 1.11 16 37 H 0.04 0.99 8.13 -2.38 -0.02 0.97 16 38 H 0.05 0.96 8.06 -2.39 -0.02 0.94 16 39 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 40 H 0.08 1.32 7.27 -2.38 -0.02 1.30 16 41 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -74.74 341.40 2.75 -71.99 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.11 Total: 9.81 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 2.75 Total: -34.03 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -1.95 Total: -75.17 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.05 Total: -20.87 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 1.88 Total: 48.27 kcal Total: -74.74 2.75 -71.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592736654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.578 kcal (2) G-P(sol) polarization free energy of solvation -74.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds