Wall clock time and date at job start Mon Mar 30 2020 07:51:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86800 * 119.99931 * 2 1
4 4 H 1.48501 * 109.47483 * 269.99827 * 3 2 1
5 5 H 1.48499 * 109.47134 * 30.00341 * 3 2 1
6 6 H 1.48507 * 109.46904 * 150.00164 * 3 2 1
7 7 C 1.37871 * 120.00126 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00092 * 0.02562 * 7 2 1
9 9 C 1.50703 * 120.00445 * 180.02562 * 7 2 1
10 10 C 1.52997 * 109.47646 * 180.02562 * 9 7 2
11 11 C 1.52995 * 109.47600 * 180.02562 * 10 9 7
12 12 C 1.52990 * 109.47353 * 180.02562 * 11 10 9
13 13 C 1.50703 * 109.47398 * 179.97438 * 12 11 10
14 14 O 1.21283 * 119.99488 * 359.97438 * 13 12 11
15 15 N 1.34777 * 120.00290 * 180.02562 * 13 12 11
16 16 C 1.46498 * 119.99828 * 180.27728 * 15 13 12
17 17 H 1.09006 * 109.61641 * 34.72021 * 16 15 13
18 18 C 1.53297 * 109.61550 * 274.36177 * 16 15 13
19 19 C 1.52771 * 108.63902 * 165.99808 * 18 16 15
20 20 C 1.52717 * 110.28008 * 54.24733 * 19 18 16
21 21 H 1.09002 * 114.90915 * 127.95914 * 20 19 18
22 22 C 1.53645 * 116.03292 * 269.91767 * 20 19 18
23 23 C 1.52068 * 120.52285 * 338.65038 * 20 19 18
24 24 H 1.08992 * 115.31688 * 148.98410 * 23 20 19
25 25 C 1.52075 * 120.02230 * 5.28406 * 23 20 19
26 26 H 0.97005 * 120.00032 * 359.97438 * 1 2 3
27 27 H 1.08998 * 109.46954 * 59.99756 * 9 7 2
28 28 H 1.09005 * 109.46634 * 299.99918 * 9 7 2
29 29 H 1.08999 * 109.46950 * 59.99410 * 10 9 7
30 30 H 1.09003 * 109.46788 * 300.00484 * 10 9 7
31 31 H 1.08998 * 109.47142 * 59.99377 * 11 10 9
32 32 H 1.09011 * 109.46657 * 299.99934 * 11 10 9
33 33 H 1.08998 * 109.47508 * 59.99597 * 12 11 10
34 34 H 1.09002 * 109.47337 * 299.99883 * 12 11 10
35 35 H 0.97001 * 119.99727 * 359.97438 * 15 13 12
36 36 H 1.08999 * 109.62368 * 285.55640 * 18 16 15
37 37 H 1.09006 * 109.61904 * 46.09862 * 18 16 15
38 38 H 1.08999 * 109.20068 * 294.06589 * 19 18 16
39 39 H 1.08996 * 109.39368 * 174.55540 * 19 18 16
40 40 H 1.09005 * 117.53871 * 4.30514 * 22 20 19
41 41 H 1.09001 * 117.59970 * 219.03644 * 22 20 19
42 42 H 1.08998 * 109.27026 * 218.04262 * 25 23 20
43 43 H 1.09002 * 109.27103 * 98.56420 * 25 23 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 2.4967 2.0465 -1.4001
5 1 1.4466 2.6526 0.7001
6 1 3.5467 1.4401 0.7000
7 6 2.0045 -1.1940 -0.0005
8 1 1.4645 -2.1293 -0.0014
9 6 3.5115 -1.1941 0.0000
10 6 4.0216 -2.6365 -0.0014
11 6 5.5515 -2.6366 -0.0001
12 6 6.0615 -4.0790 -0.0022
13 6 7.5685 -4.0791 -0.0016
14 8 8.1749 -3.0287 -0.0002
15 7 8.2424 -5.2463 -0.0037
16 6 9.7074 -5.2463 0.0030
17 1 10.0706 -4.4049 0.5932
18 6 10.2286 -5.1301 -1.4339
19 6 11.7153 -4.7819 -1.3874
20 6 12.4699 -5.7958 -0.5301
21 1 13.3397 -6.2451 -1.0093
22 6 12.5866 -5.4606 0.9648
23 6 11.7330 -6.6342 0.5026
24 1 12.1494 -7.6255 0.6812
25 6 10.2179 -6.5549 0.6063
26 1 -0.4850 0.8401 0.0004
27 1 3.8745 -0.6808 0.8905
28 1 3.8752 -0.6796 -0.8895
29 1 3.6585 -3.1494 -0.8920
30 1 3.6578 -3.1513 0.8879
31 1 5.9142 -2.1238 0.8907
32 1 5.9156 -2.1216 -0.8893
33 1 5.6989 -4.5914 -0.8933
34 1 5.6975 -4.5944 0.8866
35 1 7.7574 -6.0863 -0.0052
36 1 10.0945 -6.0807 -1.9500
37 1 9.6832 -4.3457 -1.9588
38 1 11.8372 -3.7863 -0.9606
39 1 12.1211 -4.7912 -2.3990
40 1 12.0687 -4.5712 1.3238
41 1 13.5300 -5.6882 1.4612
42 1 9.9260 -6.6053 1.6553
43 1 9.7762 -7.3947 0.0698
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000592736654.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:51:14
Heat of formation + Delta-G solvation = -72.569350 kcal
Electronic energy + Delta-G solvation = -19594.427497 eV
Core-core repulsion = 16637.721547 eV
Total energy + Delta-G solvation = -2956.705950 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 265.178 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-41.29439 -39.91737 -36.74623 -35.91207 -34.60346 -32.90885 -31.97248 -30.94389
-27.67383 -25.50856 -24.23478 -23.06951 -22.05068 -21.70713 -21.32798 -19.53160
-18.85680 -17.85158 -17.61639 -16.88393 -16.37134 -15.98767 -15.69276 -15.37096
-14.96066 -14.90876 -14.61512 -14.54925 -13.89429 -13.75089 -13.52172 -13.40889
-13.12735 -12.85687 -12.60700 -12.33858 -12.24391 -12.07248 -11.99953 -11.75840
-11.57722 -11.51094 -11.34698 -11.26492 -10.76447 -10.75513 -10.74132 -10.64552
-10.00537 -8.30004 -6.32991 1.34406 1.35840 1.48822 1.67660 2.20069
2.35627 2.82200 3.05363 3.57026 3.77259 3.84106 3.92421 4.02882
4.06018 4.08805 4.15949 4.24446 4.46331 4.50622 4.58491 4.60674
4.65770 4.74680 4.78145 4.87064 4.91495 4.96225 5.05259 5.13780
5.14870 5.19390 5.22752 5.23372 5.27887 5.34589 5.36879 5.56714
5.61558 5.65621 5.68595 6.29321 6.60265 6.74918 7.31585 7.32093
8.86579
Molecular weight = 265.18amu
Principal moments of inertia in cm(-1)
A = 0.046215 B = 0.002790 C = 0.002712
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 605.711961 B =10032.175351 C =10320.735097
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.950 5.950
2 C 0.004 3.996
3 Si 0.947 3.053
4 H -0.267 1.267
5 H -0.281 1.281
6 H -0.253 1.253
7 C -0.530 4.530
8 H 0.037 0.963
9 C -0.017 4.017
10 C -0.093 4.093
11 C -0.097 4.097
12 C -0.131 4.131
13 C 0.512 3.488
14 O -0.587 6.587
15 N -0.716 5.716
16 C 0.141 3.859
17 H 0.059 0.941
18 C -0.124 4.124
19 C -0.089 4.089
20 C -0.151 4.151
21 H 0.117 0.883
22 C -0.192 4.192
23 C -0.130 4.130
24 H 0.122 0.878
25 C -0.089 4.089
26 H 0.266 0.734
27 H 0.013 0.987
28 H 0.012 0.988
29 H 0.057 0.943
30 H 0.057 0.943
31 H 0.049 0.951
32 H 0.050 0.950
33 H 0.116 0.884
34 H 0.116 0.884
35 H 0.417 0.583
36 H 0.082 0.918
37 H 0.043 0.957
38 H 0.049 0.951
39 H 0.078 0.922
40 H 0.079 0.921
41 H 0.104 0.896
42 H 0.077 0.923
43 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 27.024 -18.158 -0.389 32.560
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.591 5.591
2 C -0.193 4.193
3 Si 0.771 3.229
4 H -0.192 1.192
5 H -0.207 1.207
6 H -0.177 1.177
7 C -0.568 4.568
8 H 0.056 0.944
9 C -0.055 4.055
10 C -0.131 4.131
11 C -0.136 4.136
12 C -0.171 4.171
13 C 0.300 3.700
14 O -0.467 6.467
15 N -0.368 5.368
16 C 0.036 3.964
17 H 0.077 0.923
18 C -0.163 4.163
19 C -0.127 4.127
20 C -0.169 4.169
21 H 0.135 0.865
22 C -0.229 4.229
23 C -0.149 4.149
24 H 0.139 0.861
25 C -0.127 4.127
26 H 0.075 0.925
27 H 0.031 0.969
28 H 0.030 0.970
29 H 0.076 0.924
30 H 0.076 0.924
31 H 0.068 0.932
32 H 0.069 0.931
33 H 0.134 0.866
34 H 0.134 0.866
35 H 0.254 0.746
36 H 0.101 0.899
37 H 0.062 0.938
38 H 0.068 0.932
39 H 0.097 0.903
40 H 0.097 0.903
41 H 0.123 0.877
42 H 0.096 0.904
43 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges 27.311 -17.320 -0.379 32.342
hybrid contribution -0.433 0.837 0.009 0.943
sum 26.879 -16.483 -0.370 31.532
Atomic orbital electron populations
1.70060 1.08098 1.28081 1.52895 1.25990 0.95625 1.03386 0.94303
0.85695 0.79363 0.78648 0.79181 1.19212 1.20682 1.17686 1.21544
0.92091 0.93232 1.49941 0.94420 1.19580 0.93919 0.95935 0.96038
1.21337 0.93704 0.96697 1.01369 1.21274 0.94807 0.95860 1.01626
1.21682 0.89827 0.99009 1.06560 1.21177 0.91127 0.83414 0.74310
1.90685 1.71496 1.33256 1.51258 1.45985 1.06980 1.08794 1.75014
1.20981 0.79506 0.99198 0.96696 0.92325 1.21882 0.95994 1.02008
0.96367 1.20987 0.93931 0.97461 1.00297 1.22300 1.02159 1.01552
0.90867 0.86510 1.23191 1.02273 0.99807 0.97673 1.21830 0.93225
0.96975 1.02870 0.86053 1.21074 0.93731 0.96037 1.01856 0.92505
0.96859 0.96970 0.92398 0.92424 0.93172 0.93120 0.86593 0.86579
0.74573 0.89924 0.93806 0.93190 0.90323 0.90288 0.87718 0.90430
0.88658
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -60.87 13.96 21.44 0.30 -60.57 16
2 C 0.00 0.22 5.47 84.65 0.46 0.68 16
3 Si 0.95 46.38 27.47 68.60 1.88 48.27 16
4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16
5 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16
6 H -0.25 -11.82 6.54 99.48 0.65 -11.17 16
7 C -0.53 -31.49 9.66 25.60 0.25 -31.25 16
8 H 0.04 2.41 7.99 -2.91 -0.02 2.39 16
9 C -0.02 -0.85 4.04 29.85 0.12 -0.73 16
10 C -0.09 -3.63 5.15 30.59 0.16 -3.47 16
11 C -0.10 -3.22 4.50 30.59 0.14 -3.08 16
12 C -0.13 -3.03 5.70 29.85 0.17 -2.86 16
13 C 0.51 13.06 7.79 87.66 0.68 13.74 16
14 O -0.59 -20.82 15.65 -3.04 -0.05 -20.87 16
15 N -0.72 -12.35 5.09 -442.24 -2.25 -14.60 16
16 C 0.14 2.45 2.20 45.05 0.10 2.55 16
17 H 0.06 1.40 6.56 -2.38 -0.02 1.38 16
18 C -0.12 -2.13 5.52 30.62 0.17 -1.97 16
19 C -0.09 -1.39 5.83 30.42 0.18 -1.21 16
20 C -0.15 -1.85 6.19 -10.98 -0.07 -1.92 16
21 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16
22 C -0.19 -2.52 9.66 30.58 0.30 -2.23 16
23 C -0.13 -1.40 6.00 -11.64 -0.07 -1.47 16
24 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16
25 C -0.09 -0.98 5.42 30.25 0.16 -0.82 16
26 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16
27 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16
28 H 0.01 0.59 7.57 -2.38 -0.02 0.57 16
29 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16
30 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16
31 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16
32 H 0.05 1.79 8.10 -2.38 -0.02 1.77 16
33 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16
34 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16
35 H 0.42 4.20 8.60 -92.71 -0.80 3.40 16
36 H 0.08 1.13 8.05 -2.39 -0.02 1.11 16
37 H 0.04 0.99 8.13 -2.38 -0.02 0.97 16
38 H 0.05 0.96 8.06 -2.39 -0.02 0.94 16
39 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16
40 H 0.08 1.32 7.27 -2.38 -0.02 1.30 16
41 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16
42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16
43 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16
Total: -1.00 -74.74 341.40 2.75 -71.99
By element:
Atomic # 1 Polarization: 9.69 SS G_CDS: 0.11 Total: 9.81 kcal
Atomic # 6 Polarization: -36.77 SS G_CDS: 2.75 Total: -34.03 kcal
Atomic # 7 Polarization: -73.22 SS G_CDS: -1.95 Total: -75.17 kcal
Atomic # 8 Polarization: -20.82 SS G_CDS: -0.05 Total: -20.87 kcal
Atomic # 14 Polarization: 46.38 SS G_CDS: 1.88 Total: 48.27 kcal
Total: -74.74 2.75 -71.99 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592736654.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.578 kcal
(2) G-P(sol) polarization free energy of solvation -74.737 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.315 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.991 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.569 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds