Wall clock time and date at job start Mon Mar 30 2020 08:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 110.01622 * 2 1 4 4 C 1.54270 * 110.03372 * 238.56018 * 2 1 3 5 5 C 1.54886 * 104.19794 * 264.32435 * 4 2 1 6 6 C 1.54971 * 102.77601 * 322.08343 * 5 4 2 7 7 C 1.53875 * 110.03562 * 121.39421 * 2 1 3 8 8 H 1.08995 * 110.03010 * 359.95289 * 7 2 1 9 9 C 1.52995 * 110.03148 * 238.57025 * 7 2 1 10 10 H 1.08998 * 110.88766 * 311.34152 * 9 7 2 11 11 C 1.55154 * 111.00443 * 187.46523 * 9 7 2 12 12 C 1.54328 * 102.94531 * 206.38573 * 11 9 7 13 13 N 1.47027 * 107.26863 * 22.19156 * 12 11 9 14 14 C 1.34774 * 125.64957 * 181.02601 * 13 12 11 15 15 O 1.21687 * 120.00304 * 180.02562 * 14 13 12 16 16 C 1.46379 * 119.99933 * 0.02562 * 14 13 12 17 17 H 1.07999 * 119.99511 * 8.49556 * 16 14 13 18 18 C 1.40044 * 120.00108 * 188.48929 * 16 14 13 19 19 N 1.30668 * 120.00193 * 193.38741 * 18 16 14 20 20 Si 1.86801 * 119.99975 * 13.38521 * 18 16 14 21 21 H 1.48494 * 109.47411 * 269.99787 * 20 18 16 22 22 H 1.48502 * 109.47160 * 30.00168 * 20 18 16 23 23 H 1.48494 * 109.47021 * 149.99761 * 20 18 16 24 24 C 1.47430 * 108.70144 * 1.28888 * 13 12 11 25 25 H 1.08997 * 109.47066 * 298.60553 * 1 2 3 26 26 H 1.09001 * 109.47576 * 58.60829 * 1 2 3 27 27 H 1.09009 * 109.46791 * 178.60854 * 1 2 3 28 28 H 1.09001 * 109.46637 * 173.81568 * 3 2 1 29 29 H 1.08998 * 109.47057 * 293.82070 * 3 2 1 30 30 H 1.08999 * 109.46783 * 53.81912 * 3 2 1 31 31 H 1.09007 * 110.48288 * 23.00143 * 4 2 1 32 32 H 1.08996 * 110.48675 * 145.64468 * 4 2 1 33 33 H 1.08998 * 110.75721 * 80.36857 * 5 4 2 34 34 H 1.08994 * 110.75971 * 203.55701 * 5 4 2 35 35 H 1.08996 * 110.47032 * 279.23411 * 6 5 4 36 36 H 1.09004 * 110.52763 * 156.56790 * 6 5 4 37 37 H 1.09003 * 110.72386 * 88.02107 * 11 9 7 38 38 H 1.09007 * 110.87331 * 324.81907 * 11 9 7 39 39 H 1.08999 * 109.88414 * 262.77468 * 12 11 9 40 40 H 1.08996 * 110.01136 * 141.67947 * 12 11 9 41 41 H 0.96997 * 119.99685 * 354.91926 * 19 18 16 42 42 H 1.08998 * 110.36611 * 94.48712 * 24 13 12 43 43 H 1.09003 * 110.36220 * 216.80684 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0585 -0.7560 -1.2366 5 6 2.3281 -2.1904 -0.7183 6 6 2.8872 -1.9410 0.7053 7 6 2.0572 -0.7531 1.2340 8 1 1.2230 -1.1178 1.8333 9 6 2.9409 0.1712 2.0740 10 1 3.6746 0.6806 1.4493 11 6 3.6342 -0.6124 3.2196 12 6 3.8733 0.4759 4.2875 13 7 2.9176 1.5620 4.0253 14 6 2.8190 2.7080 4.7276 15 8 1.9865 3.5406 4.4199 16 6 3.7133 2.9514 5.8606 17 1 4.5388 2.2814 6.0504 18 6 3.4985 4.0529 6.6982 19 7 4.4266 4.4247 7.5397 20 14 1.8853 4.9909 6.6126 21 1 2.0016 6.0859 5.6164 22 1 0.7961 4.0664 6.2073 23 1 1.5758 5.5659 7.9463 24 6 2.0809 1.1870 2.8709 25 1 -0.3633 0.4920 0.9022 26 1 -0.3634 0.5353 -0.8772 27 1 -0.3633 -1.0275 -0.0250 28 1 3.1380 1.4292 0.1107 29 1 1.7881 1.9211 -0.9401 30 1 1.6080 1.9866 0.8295 31 1 1.3060 -0.7704 -2.0252 32 1 2.9811 -0.3007 -1.5965 33 1 1.4032 -2.7654 -0.6740 34 1 3.0652 -2.6948 -1.3431 35 1 3.9439 -1.6775 0.6591 36 1 2.7392 -2.8195 1.3335 37 1 4.5803 -1.0345 2.8807 38 1 2.9809 -1.3948 3.6059 39 1 4.8931 0.8529 4.2107 40 1 3.7039 0.0653 5.2828 41 1 5.2334 3.8952 7.6369 42 1 1.1551 0.7212 3.2087 43 1 1.8645 2.0626 2.2589 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592870027.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:30 Heat of formation + Delta-G solvation = -66.776608 kcal Electronic energy + Delta-G solvation = -21319.164697 eV Core-core repulsion = 18362.709940 eV Total energy + Delta-G solvation = -2956.454758 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.20386 -38.06230 -35.92783 -32.85949 -32.40478 -31.57166 -28.96010 -27.78857 -27.04904 -25.53460 -24.45746 -22.37651 -21.12142 -20.05000 -19.13031 -18.26705 -17.40893 -16.03595 -15.61192 -15.33873 -14.59812 -14.33548 -13.89256 -13.69232 -13.51892 -13.18018 -13.09390 -12.95161 -12.49431 -12.36406 -11.96016 -11.77087 -11.66370 -11.52471 -11.31647 -11.22918 -10.98339 -10.69233 -10.59365 -10.55572 -10.42901 -10.26737 -10.00518 -9.96976 -9.90032 -9.21702 -8.86655 -7.93947 -7.43687 -6.97399 -4.86376 3.59571 3.65905 4.04030 4.30568 4.33931 4.44152 4.48213 4.56724 4.67915 4.99215 5.09984 5.13180 5.19754 5.28108 5.33499 5.45149 5.50927 5.58180 5.59879 5.69767 5.71797 5.74864 5.77133 5.84842 5.89742 5.94265 5.99684 6.01964 6.09166 6.11255 6.21900 6.29609 6.32566 6.41198 6.45642 6.52916 6.63426 6.67650 7.15075 7.76282 7.82421 8.22411 8.87941 9.12560 10.11574 10.35431 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.033490 B = 0.005073 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.858803 B = 5518.306023 C = 6065.811037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.063 4.063 3 C -0.158 4.158 4 C -0.115 4.115 5 C -0.125 4.125 6 C -0.117 4.117 7 C -0.071 4.071 8 H 0.073 0.927 9 C -0.098 4.098 10 H 0.087 0.913 11 C -0.127 4.127 12 C 0.121 3.879 13 N -0.638 5.638 14 C 0.567 3.433 15 O -0.617 6.617 16 C -0.596 4.596 17 H 0.071 0.929 18 C 0.063 3.937 19 N -0.833 5.833 20 Si 1.121 2.879 21 H -0.287 1.287 22 H -0.277 1.277 23 H -0.319 1.319 24 C 0.112 3.888 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.277 0.723 42 H 0.046 0.954 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.999 -13.833 -15.017 20.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.063 4.063 3 C -0.215 4.215 4 C -0.152 4.152 5 C -0.162 4.162 6 C -0.154 4.154 7 C -0.090 4.090 8 H 0.092 0.908 9 C -0.117 4.117 10 H 0.105 0.895 11 C -0.165 4.165 12 C -0.003 4.003 13 N -0.374 5.374 14 C 0.377 3.623 15 O -0.510 6.510 16 C -0.632 4.632 17 H 0.089 0.911 18 C -0.154 4.154 19 N -0.461 5.461 20 Si 0.952 3.048 21 H -0.214 1.214 22 H -0.203 1.203 23 H -0.251 1.251 24 C -0.012 4.012 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.123 -12.071 -14.510 19.319 hybrid contribution 1.176 -1.599 -0.563 2.063 sum -2.947 -13.670 -15.073 20.560 Atomic orbital electron populations 1.21911 0.94547 1.01265 1.01829 1.21152 0.95322 0.95453 0.94384 1.22396 1.01567 0.95426 1.02111 1.22481 1.00641 0.95192 0.96910 1.22485 1.00488 0.96781 0.96481 1.22408 0.99678 0.97590 0.95744 1.21814 0.97448 0.94440 0.95276 0.90835 1.22630 0.97707 0.95909 0.95438 0.89478 1.22700 1.00527 0.97506 0.95775 1.21601 0.93586 0.87607 0.97550 1.48249 1.37106 1.18971 1.33091 1.18144 0.83234 0.78133 0.82760 1.90217 1.43290 1.45831 1.71629 1.22021 1.14198 1.14489 1.12455 0.91104 1.27079 1.03377 0.94565 0.90421 1.70629 1.06920 1.35508 1.33015 0.82621 0.73984 0.75666 0.72539 1.21420 1.20333 1.25063 1.22352 0.93357 0.97311 0.88145 0.92368 0.92936 0.92928 0.92046 0.93401 0.90708 0.91983 0.91691 0.91830 0.91999 0.91490 0.91887 0.91094 0.91328 0.92933 0.92799 0.91178 0.93591 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 8.14 37.16 0.30 -1.13 16 2 C -0.06 -0.68 0.90 -153.39 -0.14 -0.82 16 3 C -0.16 -1.94 7.09 37.16 0.26 -1.68 16 4 C -0.11 -1.07 5.90 -25.07 -0.15 -1.22 16 5 C -0.12 -1.08 6.91 -24.70 -0.17 -1.25 16 6 C -0.12 -1.12 5.64 -25.03 -0.14 -1.26 16 7 C -0.07 -0.80 2.16 -89.50 -0.19 -1.00 16 8 H 0.07 0.87 7.49 -51.93 -0.39 0.48 16 9 C -0.10 -1.36 1.80 -88.36 -0.16 -1.52 16 10 H 0.09 1.24 5.90 -51.93 -0.31 0.94 16 11 C -0.13 -1.75 5.59 -24.90 -0.14 -1.89 16 12 C 0.12 2.25 6.08 -3.06 -0.02 2.23 16 13 N -0.64 -14.46 3.33 -172.03 -0.57 -15.03 16 14 C 0.57 15.81 7.52 -12.99 -0.10 15.71 16 15 O -0.62 -18.49 12.51 5.20 0.07 -18.42 16 16 C -0.60 -17.32 9.42 -35.63 -0.34 -17.65 16 17 H 0.07 2.03 7.38 -52.49 -0.39 1.65 16 18 C 0.06 1.86 5.52 -17.37 -0.10 1.77 16 19 N -0.83 -24.47 13.64 55.55 0.76 -23.71 16 20 Si 1.12 30.12 26.38 -169.99 -4.48 25.63 16 21 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 22 H -0.28 -7.66 6.49 56.52 0.37 -7.29 16 23 H -0.32 -8.15 7.11 56.52 0.40 -7.75 16 24 C 0.11 2.06 5.69 -2.41 -0.01 2.04 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.50 8.14 -51.92 -0.42 0.07 16 28 H 0.06 0.77 6.02 -51.93 -0.31 0.46 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 1.07 4.75 -51.93 -0.25 0.83 16 31 H 0.06 0.54 7.84 -51.92 -0.41 0.13 16 32 H 0.06 0.61 7.86 -51.93 -0.41 0.21 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.65 7.77 -51.93 -0.40 0.25 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.88 8.04 -51.92 -0.42 0.46 16 39 H 0.05 1.00 8.10 -51.93 -0.42 0.58 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.28 7.83 8.72 -40.82 -0.36 7.48 16 42 H 0.05 0.84 7.91 -51.93 -0.41 0.43 16 43 H 0.08 1.49 5.18 -51.93 -0.27 1.23 16 LS Contribution 321.19 15.07 4.84 4.84 Total: -1.00 -31.97 321.19 -7.85 -39.82 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -7.37 Total: -5.44 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -1.09 Total: -7.68 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.19 Total: -38.75 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.07 Total: -18.42 kcal Atomic # 14 Polarization: 30.12 SS G_CDS: -4.48 Total: 25.63 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.97 -7.85 -39.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592870027.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.958 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds