Wall clock time and date at job start Mon Mar 30 2020 08:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 110.01622 * 2 1 4 4 C 1.54270 * 110.03372 * 238.56018 * 2 1 3 5 5 C 1.54886 * 104.19794 * 264.32435 * 4 2 1 6 6 C 1.54971 * 102.77601 * 322.08343 * 5 4 2 7 7 C 1.53875 * 110.03562 * 121.39421 * 2 1 3 8 8 H 1.08995 * 110.03010 * 359.95289 * 7 2 1 9 9 C 1.52995 * 110.03148 * 238.57025 * 7 2 1 10 10 H 1.08998 * 110.88766 * 311.34152 * 9 7 2 11 11 C 1.55154 * 111.00443 * 187.46523 * 9 7 2 12 12 C 1.54328 * 102.94531 * 206.38573 * 11 9 7 13 13 N 1.47027 * 107.26863 * 22.19156 * 12 11 9 14 14 C 1.34774 * 125.64957 * 181.02601 * 13 12 11 15 15 O 1.21687 * 120.00304 * 180.02562 * 14 13 12 16 16 C 1.46379 * 119.99933 * 0.02562 * 14 13 12 17 17 H 1.07999 * 119.99511 * 8.49556 * 16 14 13 18 18 C 1.40044 * 120.00108 * 188.48929 * 16 14 13 19 19 N 1.30668 * 120.00193 * 193.38741 * 18 16 14 20 20 Si 1.86801 * 119.99975 * 13.38521 * 18 16 14 21 21 H 1.48494 * 109.47411 * 269.99787 * 20 18 16 22 22 H 1.48502 * 109.47160 * 30.00168 * 20 18 16 23 23 H 1.48494 * 109.47021 * 149.99761 * 20 18 16 24 24 C 1.47430 * 108.70144 * 1.28888 * 13 12 11 25 25 H 1.08997 * 109.47066 * 298.60553 * 1 2 3 26 26 H 1.09001 * 109.47576 * 58.60829 * 1 2 3 27 27 H 1.09009 * 109.46791 * 178.60854 * 1 2 3 28 28 H 1.09001 * 109.46637 * 173.81568 * 3 2 1 29 29 H 1.08998 * 109.47057 * 293.82070 * 3 2 1 30 30 H 1.08999 * 109.46783 * 53.81912 * 3 2 1 31 31 H 1.09007 * 110.48288 * 23.00143 * 4 2 1 32 32 H 1.08996 * 110.48675 * 145.64468 * 4 2 1 33 33 H 1.08998 * 110.75721 * 80.36857 * 5 4 2 34 34 H 1.08994 * 110.75971 * 203.55701 * 5 4 2 35 35 H 1.08996 * 110.47032 * 279.23411 * 6 5 4 36 36 H 1.09004 * 110.52763 * 156.56790 * 6 5 4 37 37 H 1.09003 * 110.72386 * 88.02107 * 11 9 7 38 38 H 1.09007 * 110.87331 * 324.81907 * 11 9 7 39 39 H 1.08999 * 109.88414 * 262.77468 * 12 11 9 40 40 H 1.08996 * 110.01136 * 141.67947 * 12 11 9 41 41 H 0.96997 * 119.99685 * 354.91926 * 19 18 16 42 42 H 1.08998 * 110.36611 * 94.48712 * 24 13 12 43 43 H 1.09003 * 110.36220 * 216.80684 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0585 -0.7560 -1.2366 5 6 2.3281 -2.1904 -0.7183 6 6 2.8872 -1.9410 0.7053 7 6 2.0572 -0.7531 1.2340 8 1 1.2230 -1.1178 1.8333 9 6 2.9409 0.1712 2.0740 10 1 3.6746 0.6806 1.4493 11 6 3.6342 -0.6124 3.2196 12 6 3.8733 0.4759 4.2875 13 7 2.9176 1.5620 4.0253 14 6 2.8190 2.7080 4.7276 15 8 1.9865 3.5406 4.4199 16 6 3.7133 2.9514 5.8606 17 1 4.5388 2.2814 6.0504 18 6 3.4985 4.0529 6.6982 19 7 4.4266 4.4247 7.5397 20 14 1.8853 4.9909 6.6126 21 1 2.0016 6.0859 5.6164 22 1 0.7961 4.0664 6.2073 23 1 1.5758 5.5659 7.9463 24 6 2.0809 1.1870 2.8709 25 1 -0.3633 0.4920 0.9022 26 1 -0.3634 0.5353 -0.8772 27 1 -0.3633 -1.0275 -0.0250 28 1 3.1380 1.4292 0.1107 29 1 1.7881 1.9211 -0.9401 30 1 1.6080 1.9866 0.8295 31 1 1.3060 -0.7704 -2.0252 32 1 2.9811 -0.3007 -1.5965 33 1 1.4032 -2.7654 -0.6740 34 1 3.0652 -2.6948 -1.3431 35 1 3.9439 -1.6775 0.6591 36 1 2.7392 -2.8195 1.3335 37 1 4.5803 -1.0345 2.8807 38 1 2.9809 -1.3948 3.6059 39 1 4.8931 0.8529 4.2107 40 1 3.7039 0.0653 5.2828 41 1 5.2334 3.8952 7.6369 42 1 1.1551 0.7212 3.2087 43 1 1.8645 2.0626 2.2589 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592870027.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:30 Heat of formation + Delta-G solvation = -85.674630 kcal Electronic energy + Delta-G solvation = -21319.984177 eV Core-core repulsion = 18362.709940 eV Total energy + Delta-G solvation = -2957.274237 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.32986 -39.73946 -37.63954 -35.12405 -33.23960 -32.99960 -30.31419 -29.11939 -28.32266 -27.09364 -25.42246 -23.93600 -22.19745 -21.21330 -20.90572 -19.49935 -19.10608 -17.69523 -17.04315 -16.43690 -16.26774 -15.80839 -15.58422 -14.95439 -14.69376 -14.58996 -14.45573 -14.35237 -13.91245 -13.71247 -13.50514 -13.07056 -12.94250 -12.77612 -12.59135 -12.38843 -12.28845 -12.18488 -11.82363 -11.63997 -11.42630 -11.38577 -11.32387 -11.26322 -11.13810 -10.99229 -10.92953 -10.14435 -9.32042 -9.24388 -7.14305 1.40054 1.48605 1.90633 2.12623 2.34479 2.69862 3.24716 3.47475 3.64877 3.67183 3.84769 3.96076 4.14570 4.30092 4.32486 4.45326 4.50009 4.52594 4.65761 4.70329 4.73012 4.76906 4.83863 4.85967 4.91523 4.97253 5.01039 5.09253 5.13417 5.14391 5.18263 5.25359 5.30055 5.35661 5.38137 5.48459 5.52179 5.55062 5.59833 5.66717 5.75844 6.10563 6.61121 7.10143 7.95003 8.07015 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.033490 B = 0.005073 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.858803 B = 5518.306023 C = 6065.811037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.063 4.063 3 C -0.157 4.157 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.113 4.113 7 C -0.067 4.067 8 H 0.071 0.929 9 C -0.082 4.082 10 H 0.086 0.914 11 C -0.111 4.111 12 C 0.112 3.888 13 N -0.645 5.645 14 C 0.559 3.441 15 O -0.645 6.645 16 C -0.613 4.613 17 H 0.065 0.935 18 C 0.032 3.968 19 N -0.845 5.845 20 Si 1.152 2.848 21 H -0.292 1.292 22 H -0.293 1.293 23 H -0.297 1.297 24 C 0.106 3.894 25 H 0.039 0.961 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.045 0.955 40 H 0.047 0.953 41 H 0.278 0.722 42 H 0.046 0.954 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.060 -16.085 -16.690 23.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.063 4.063 3 C -0.213 4.213 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.151 4.151 7 C -0.086 4.086 8 H 0.090 0.910 9 C -0.100 4.100 10 H 0.104 0.896 11 C -0.149 4.149 12 C -0.012 4.012 13 N -0.378 5.378 14 C 0.367 3.633 15 O -0.540 6.540 16 C -0.649 4.649 17 H 0.083 0.917 18 C -0.183 4.183 19 N -0.473 5.473 20 Si 0.982 3.018 21 H -0.219 1.219 22 H -0.221 1.221 23 H -0.226 1.226 24 C -0.016 4.016 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.104 0.896 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.159 -14.363 -16.185 22.036 hybrid contribution 1.204 -0.925 -0.087 1.521 sum -2.955 -15.289 -16.272 22.522 Atomic orbital electron populations 1.21897 0.94298 1.01982 1.01247 1.21168 0.95534 0.94448 0.95192 1.22352 1.01078 0.96507 1.01382 1.22457 1.00797 0.95475 0.96202 1.22473 1.01163 0.96248 0.95832 1.22400 0.99379 0.96811 0.96501 1.21796 0.97188 0.94647 0.94966 0.91029 1.22543 0.97190 0.95045 0.95271 0.89578 1.22690 1.02469 0.96021 0.93688 1.21868 0.92289 0.87814 0.99199 1.48213 1.37948 1.18332 1.33342 1.18081 0.82755 0.79434 0.83068 1.90184 1.44055 1.47276 1.72500 1.22165 1.14694 1.14731 1.13352 0.91680 1.27779 1.04690 0.95346 0.90444 1.70638 1.07204 1.35864 1.33571 0.82197 0.71722 0.74626 0.73277 1.21880 1.22087 1.22620 1.22614 0.93756 0.98178 0.87068 0.94138 0.92343 0.91579 0.92465 0.92602 0.93352 0.91108 0.91728 0.91162 0.90684 0.91232 0.90731 0.87978 0.89622 0.93624 0.93469 0.91167 0.93583 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.14 71.98 0.59 -2.03 16 2 C -0.06 -1.24 0.90 -51.45 -0.05 -1.28 16 3 C -0.16 -3.72 7.09 71.98 0.51 -3.21 16 4 C -0.11 -1.73 5.90 31.67 0.19 -1.55 16 5 C -0.12 -1.59 6.91 31.91 0.22 -1.37 16 6 C -0.11 -1.73 5.64 31.70 0.18 -1.55 16 7 C -0.07 -1.34 2.16 -10.07 -0.02 -1.37 16 8 H 0.07 1.50 7.49 -2.39 -0.02 1.48 16 9 C -0.08 -2.12 1.80 -9.33 -0.02 -2.14 16 10 H 0.09 2.30 5.90 -2.39 -0.01 2.29 16 11 C -0.11 -2.75 5.59 31.78 0.18 -2.57 16 12 C 0.11 4.07 6.08 86.73 0.53 4.60 16 13 N -0.64 -29.45 3.33 -816.39 -2.71 -32.17 16 14 C 0.56 31.78 7.52 86.36 0.65 32.43 16 15 O -0.65 -39.53 12.51 -4.31 -0.05 -39.58 16 16 C -0.61 -36.36 9.42 24.83 0.23 -36.13 16 17 H 0.06 3.83 7.38 -2.91 -0.02 3.81 16 18 C 0.03 1.92 5.52 85.30 0.47 2.39 16 19 N -0.84 -49.92 13.64 21.83 0.30 -49.62 16 20 Si 1.15 61.80 26.38 68.60 1.81 63.61 16 21 H -0.29 -15.71 7.11 99.48 0.71 -15.00 16 22 H -0.29 -16.40 6.49 99.48 0.65 -15.76 16 23 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 24 C 0.11 3.90 5.69 86.93 0.50 4.40 16 25 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.06 1.38 6.02 -2.39 -0.01 1.37 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.41 4.75 -2.39 -0.01 1.40 16 31 H 0.07 0.99 7.84 -2.38 -0.02 0.97 16 32 H 0.06 1.02 7.86 -2.39 -0.02 1.00 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 35 H 0.07 1.06 7.77 -2.39 -0.02 1.04 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.09 1.89 8.04 -2.38 -0.02 1.87 16 39 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 40 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 41 H 0.28 15.86 8.72 -92.71 -0.81 15.06 16 42 H 0.05 1.69 7.91 -2.39 -0.02 1.67 16 43 H 0.06 2.50 5.18 -2.39 -0.01 2.49 16 Total: -1.00 -69.50 321.19 4.36 -65.14 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: 0.87 Total: 1.99 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: 4.15 Total: -9.37 kcal Atomic # 7 Polarization: -79.37 SS G_CDS: -2.42 Total: -81.79 kcal Atomic # 8 Polarization: -39.53 SS G_CDS: -0.05 Total: -39.58 kcal Atomic # 14 Polarization: 61.80 SS G_CDS: 1.81 Total: 63.61 kcal Total: -69.50 4.36 -65.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592870027.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.532 kcal (2) G-P(sol) polarization free energy of solvation -69.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds