Wall clock time and date at job start Mon Mar 30 2020 08:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 110.05955 * 2 1 4 4 C 1.54382 * 110.04391 * 238.52855 * 2 1 3 5 5 C 1.54890 * 104.19476 * 217.09025 * 4 2 1 6 6 C 1.54882 * 102.75133 * 37.97052 * 5 4 2 7 7 C 1.53874 * 110.03478 * 121.42040 * 2 1 3 8 8 H 1.08998 * 110.03212 * 238.61593 * 7 2 1 9 9 C 1.53001 * 110.03323 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.88354 * 46.09894 * 9 7 2 11 11 C 1.55155 * 111.00822 * 169.98466 * 9 7 2 12 12 C 1.54323 * 102.94452 * 153.61042 * 11 9 7 13 13 N 1.47025 * 107.27071 * 337.81031 * 12 11 9 14 14 C 1.34776 * 125.64870 * 178.90379 * 13 12 11 15 15 O 1.21682 * 120.00041 * 180.02562 * 14 13 12 16 16 C 1.46381 * 119.99778 * 0.04221 * 14 13 12 17 17 H 1.07995 * 119.99943 * 359.97438 * 16 14 13 18 18 C 1.40041 * 119.99715 * 179.97438 * 16 14 13 19 19 N 1.30676 * 120.00397 * 359.97438 * 18 16 14 20 20 Si 1.86806 * 119.99872 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46670 * 60.00082 * 20 18 16 22 22 H 1.48503 * 109.47182 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47256 * 299.99986 * 20 18 16 24 24 C 1.47429 * 108.70330 * 358.93752 * 13 12 11 25 25 H 1.09001 * 109.46730 * 306.52511 * 1 2 3 26 26 H 1.08994 * 109.47202 * 66.52698 * 1 2 3 27 27 H 1.08998 * 109.46919 * 186.52806 * 1 2 3 28 28 H 1.08997 * 109.47481 * 181.41834 * 3 2 1 29 29 H 1.08999 * 109.47103 * 301.42040 * 3 2 1 30 30 H 1.09001 * 109.47054 * 61.42053 * 3 2 1 31 31 H 1.08999 * 110.46103 * 98.42299 * 4 2 1 32 32 H 1.09003 * 110.61810 * 335.83548 * 4 2 1 33 33 H 1.08999 * 110.75759 * 279.65314 * 5 4 2 34 34 H 1.09002 * 110.91310 * 156.36006 * 5 4 2 35 35 H 1.09000 * 110.48766 * 203.37922 * 6 5 4 36 36 H 1.09003 * 110.60005 * 80.78452 * 6 5 4 37 37 H 1.08995 * 110.72103 * 271.97860 * 11 9 7 38 38 H 1.09001 * 110.71535 * 35.24806 * 11 9 7 39 39 H 1.08999 * 109.88103 * 97.22156 * 12 11 9 40 40 H 1.09001 * 109.88031 * 218.39072 * 12 11 9 41 41 H 0.96994 * 120.00129 * 180.02562 * 19 18 16 42 42 H 1.09005 * 110.36773 * 265.29200 * 24 13 12 43 43 H 1.09000 * 110.45885 * 143.02053 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0548 1.4371 0.0000 4 6 2.0592 -0.7572 -1.2370 5 6 3.3146 -1.5015 -0.7184 6 6 2.8883 -1.9407 0.7044 7 6 2.0572 -0.7536 1.2336 8 1 2.6861 -0.0952 1.8328 9 6 0.8863 -1.2665 2.0744 10 1 0.1341 -1.7412 1.4444 11 6 1.3787 -2.2372 3.1802 12 6 0.2948 -2.0981 4.2699 13 7 -0.3696 -0.8031 4.0620 14 6 -1.3900 -0.3170 4.7961 15 8 -1.8647 0.7719 4.5321 16 6 -1.9268 -1.0987 5.9112 17 1 -1.5056 -2.0651 6.1453 18 6 -2.9867 -0.5933 6.6743 19 7 -3.4962 0.5763 6.3913 20 14 -3.6724 -1.5912 8.0969 21 1 -2.5982 -1.8362 9.0926 22 1 -4.7806 -0.8401 8.7397 23 1 -4.1829 -2.8901 7.5897 24 6 0.2647 -0.1248 2.9170 25 1 -0.3633 0.6117 0.8259 26 1 -0.3633 0.4093 -0.9426 27 1 -0.3633 -1.0210 0.1168 28 1 3.1444 1.4261 -0.0254 29 1 1.6762 1.9622 -0.8770 30 1 1.7176 1.9470 0.9025 31 1 2.3303 -0.0557 -2.0259 32 1 1.3163 -1.4682 -1.5986 33 1 4.1716 -0.8294 -0.6746 34 1 3.5372 -2.3688 -1.3399 35 1 3.7644 -2.1029 1.3322 36 1 2.2789 -2.8434 0.6606 37 1 1.4197 -3.2598 2.8053 38 1 2.3511 -1.9258 3.5615 39 1 -0.4307 -2.9061 4.1764 40 1 0.7563 -2.1238 5.2571 41 1 -4.2300 0.9265 6.9201 42 1 1.0413 0.5575 3.2629 43 1 -0.4809 0.4150 2.3332 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592870028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:35 Heat of formation + Delta-G solvation = -54.348806 kcal Electronic energy + Delta-G solvation = -21224.281062 eV Core-core repulsion = 18268.365215 eV Total energy + Delta-G solvation = -2955.915848 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.06100 -37.71212 -35.46127 -32.48833 -32.29635 -31.30475 -28.72181 -27.66296 -26.99917 -25.57647 -24.37698 -22.22496 -21.08057 -19.86884 -19.01996 -18.14539 -16.73992 -15.64649 -15.51394 -15.33350 -14.52439 -14.22318 -13.76609 -13.56206 -13.41338 -13.15200 -13.00328 -12.78004 -12.27009 -11.96995 -11.67787 -11.54402 -11.38096 -11.29304 -11.20486 -11.03179 -10.90730 -10.76901 -10.59206 -10.48418 -10.44853 -10.36550 -10.13199 -10.04311 -9.85433 -9.78707 -8.82169 -7.59851 -7.09656 -6.16762 -4.61221 3.17075 3.21633 3.23703 4.11100 4.53707 4.55587 4.57108 4.61733 4.79188 5.12841 5.21063 5.27895 5.29957 5.36581 5.43687 5.55835 5.64600 5.68383 5.78504 5.82041 5.83338 5.87076 5.87745 5.93888 6.00613 6.07022 6.10912 6.13316 6.19287 6.22667 6.35361 6.38166 6.45086 6.54840 6.57990 6.70962 6.79944 6.82530 7.45393 7.48935 8.15153 8.47174 9.04701 9.55749 10.61299 10.80528 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.036919 B = 0.004638 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.230945 B = 6035.230528 C = 6526.848934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.063 4.063 3 C -0.138 4.138 4 C -0.114 4.114 5 C -0.125 4.125 6 C -0.116 4.116 7 C -0.071 4.071 8 H 0.072 0.928 9 C -0.100 4.100 10 H 0.087 0.913 11 C -0.127 4.127 12 C 0.121 3.879 13 N -0.646 5.646 14 C 0.571 3.429 15 O -0.578 6.578 16 C -0.539 4.539 17 H 0.068 0.932 18 C 0.087 3.913 19 N -0.769 5.769 20 Si 0.907 3.093 21 H -0.268 1.268 22 H -0.280 1.280 23 H -0.268 1.268 24 C 0.117 3.883 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.269 0.731 42 H 0.040 0.960 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.136 -5.316 -12.014 17.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.063 4.063 3 C -0.195 4.195 4 C -0.152 4.152 5 C -0.162 4.162 6 C -0.154 4.154 7 C -0.090 4.090 8 H 0.091 0.909 9 C -0.119 4.119 10 H 0.105 0.895 11 C -0.165 4.165 12 C -0.004 4.004 13 N -0.386 5.386 14 C 0.377 3.623 15 O -0.461 6.461 16 C -0.576 4.576 17 H 0.086 0.914 18 C -0.132 4.132 19 N -0.398 5.398 20 Si 0.732 3.268 21 H -0.193 1.193 22 H -0.205 1.205 23 H -0.193 1.193 24 C -0.007 4.007 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.641 -4.513 -12.042 17.347 hybrid contribution -0.259 -0.576 0.776 1.001 sum 11.382 -5.089 -11.266 16.804 Atomic orbital electron populations 1.22334 0.94368 1.02572 1.01963 1.21165 0.95701 0.95047 0.94370 1.21907 1.00339 0.95472 1.01832 1.22495 0.97103 0.98679 0.96919 1.22471 0.97683 0.99520 0.96574 1.22398 0.99165 0.98176 0.95666 1.21812 0.95722 0.96180 0.95251 0.90920 1.22622 0.96934 0.96753 0.95544 0.89511 1.22702 0.98596 0.99175 0.96058 1.21567 0.93606 0.88066 0.97173 1.48707 1.37402 1.18894 1.33625 1.18007 0.76757 0.85764 0.81733 1.90600 1.60867 1.22945 1.71665 1.20871 1.17965 1.04805 1.13966 0.91388 1.25724 0.95570 0.94504 0.97436 1.70014 1.19376 1.15539 1.34849 0.86441 0.78799 0.80271 0.81293 1.19275 1.20531 1.19263 1.22116 0.96167 0.94063 0.88317 0.90868 0.93502 0.91979 0.92982 0.93000 0.92316 0.92077 0.91709 0.91873 0.92062 0.91976 0.91471 0.91326 0.91562 0.93079 0.93192 0.92066 0.94206 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 7.13 37.16 0.26 -1.77 16 2 C -0.06 -0.73 0.92 -153.33 -0.14 -0.87 16 3 C -0.14 -1.55 8.15 37.16 0.30 -1.24 16 4 C -0.11 -1.14 5.90 -25.01 -0.15 -1.28 16 5 C -0.12 -1.15 6.91 -24.74 -0.17 -1.32 16 6 C -0.12 -1.19 5.58 -25.07 -0.14 -1.33 16 7 C -0.07 -0.86 2.19 -89.50 -0.20 -1.06 16 8 H 0.07 0.93 7.44 -51.93 -0.39 0.54 16 9 C -0.10 -1.47 1.83 -88.47 -0.16 -1.64 16 10 H 0.09 1.31 5.73 -51.93 -0.30 1.02 16 11 C -0.13 -1.84 5.48 -24.90 -0.14 -1.97 16 12 C 0.12 2.30 6.05 -3.06 -0.02 2.28 16 13 N -0.65 -15.34 3.33 -172.17 -0.57 -15.91 16 14 C 0.57 16.90 7.78 -12.99 -0.10 16.80 16 15 O -0.58 -19.33 15.28 5.20 0.08 -19.25 16 16 C -0.54 -15.63 9.06 -35.63 -0.32 -15.95 16 17 H 0.07 1.82 7.16 -52.49 -0.38 1.44 16 18 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 19 N -0.77 -23.45 11.83 55.55 0.66 -22.79 16 20 Si 0.91 20.45 29.56 -169.99 -5.02 15.42 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 C 0.12 2.31 5.78 -2.53 -0.01 2.29 16 25 H 0.07 1.13 4.97 -51.93 -0.26 0.87 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.82 5.96 -51.93 -0.31 0.52 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.56 7.84 -51.93 -0.41 0.16 16 32 H 0.06 0.65 7.86 -51.93 -0.41 0.24 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.69 7.59 -51.93 -0.39 0.30 16 37 H 0.07 0.84 8.01 -51.93 -0.42 0.43 16 38 H 0.07 0.89 8.04 -51.93 -0.42 0.48 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.27 7.43 8.29 -40.82 -0.34 7.09 16 42 H 0.04 0.79 7.87 -51.93 -0.41 0.38 16 43 H 0.07 1.50 5.38 -51.93 -0.28 1.22 16 LS Contribution 324.99 15.07 4.90 4.90 Total: -1.00 -33.84 324.99 -8.34 -42.18 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.30 Total: 0.14 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.08 Total: -4.69 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.08 Total: -38.70 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.08 Total: -19.25 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.84 -8.34 -42.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592870028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.173 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds