Wall clock time and date at job start Mon Mar 30 2020 08:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 110.05955 * 2 1 4 4 C 1.54382 * 110.04391 * 238.52855 * 2 1 3 5 5 C 1.54890 * 104.19476 * 217.09025 * 4 2 1 6 6 C 1.54882 * 102.75133 * 37.97052 * 5 4 2 7 7 C 1.53874 * 110.03478 * 121.42040 * 2 1 3 8 8 H 1.08998 * 110.03212 * 238.61593 * 7 2 1 9 9 C 1.53001 * 110.03323 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.88354 * 46.09894 * 9 7 2 11 11 C 1.55155 * 111.00822 * 169.98466 * 9 7 2 12 12 C 1.54323 * 102.94452 * 153.61042 * 11 9 7 13 13 N 1.47025 * 107.27071 * 337.81031 * 12 11 9 14 14 C 1.34776 * 125.64870 * 178.90379 * 13 12 11 15 15 O 1.21682 * 120.00041 * 180.02562 * 14 13 12 16 16 C 1.46381 * 119.99778 * 0.04221 * 14 13 12 17 17 H 1.07995 * 119.99943 * 359.97438 * 16 14 13 18 18 C 1.40041 * 119.99715 * 179.97438 * 16 14 13 19 19 N 1.30676 * 120.00397 * 359.97438 * 18 16 14 20 20 Si 1.86806 * 119.99872 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46670 * 60.00082 * 20 18 16 22 22 H 1.48503 * 109.47182 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47256 * 299.99986 * 20 18 16 24 24 C 1.47429 * 108.70330 * 358.93752 * 13 12 11 25 25 H 1.09001 * 109.46730 * 306.52511 * 1 2 3 26 26 H 1.08994 * 109.47202 * 66.52698 * 1 2 3 27 27 H 1.08998 * 109.46919 * 186.52806 * 1 2 3 28 28 H 1.08997 * 109.47481 * 181.41834 * 3 2 1 29 29 H 1.08999 * 109.47103 * 301.42040 * 3 2 1 30 30 H 1.09001 * 109.47054 * 61.42053 * 3 2 1 31 31 H 1.08999 * 110.46103 * 98.42299 * 4 2 1 32 32 H 1.09003 * 110.61810 * 335.83548 * 4 2 1 33 33 H 1.08999 * 110.75759 * 279.65314 * 5 4 2 34 34 H 1.09002 * 110.91310 * 156.36006 * 5 4 2 35 35 H 1.09000 * 110.48766 * 203.37922 * 6 5 4 36 36 H 1.09003 * 110.60005 * 80.78452 * 6 5 4 37 37 H 1.08995 * 110.72103 * 271.97860 * 11 9 7 38 38 H 1.09001 * 110.71535 * 35.24806 * 11 9 7 39 39 H 1.08999 * 109.88103 * 97.22156 * 12 11 9 40 40 H 1.09001 * 109.88031 * 218.39072 * 12 11 9 41 41 H 0.96994 * 120.00129 * 180.02562 * 19 18 16 42 42 H 1.09005 * 110.36773 * 265.29200 * 24 13 12 43 43 H 1.09000 * 110.45885 * 143.02053 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0548 1.4371 0.0000 4 6 2.0592 -0.7572 -1.2370 5 6 3.3146 -1.5015 -0.7184 6 6 2.8883 -1.9407 0.7044 7 6 2.0572 -0.7536 1.2336 8 1 2.6861 -0.0952 1.8328 9 6 0.8863 -1.2665 2.0744 10 1 0.1341 -1.7412 1.4444 11 6 1.3787 -2.2372 3.1802 12 6 0.2948 -2.0981 4.2699 13 7 -0.3696 -0.8031 4.0620 14 6 -1.3900 -0.3170 4.7961 15 8 -1.8647 0.7719 4.5321 16 6 -1.9268 -1.0987 5.9112 17 1 -1.5056 -2.0651 6.1453 18 6 -2.9867 -0.5933 6.6743 19 7 -3.4962 0.5763 6.3913 20 14 -3.6724 -1.5912 8.0969 21 1 -2.5982 -1.8362 9.0926 22 1 -4.7806 -0.8401 8.7397 23 1 -4.1829 -2.8901 7.5897 24 6 0.2647 -0.1248 2.9170 25 1 -0.3633 0.6117 0.8259 26 1 -0.3633 0.4093 -0.9426 27 1 -0.3633 -1.0210 0.1168 28 1 3.1444 1.4261 -0.0254 29 1 1.6762 1.9622 -0.8770 30 1 1.7176 1.9470 0.9025 31 1 2.3303 -0.0557 -2.0259 32 1 1.3163 -1.4682 -1.5986 33 1 4.1716 -0.8294 -0.6746 34 1 3.5372 -2.3688 -1.3399 35 1 3.7644 -2.1029 1.3322 36 1 2.2789 -2.8434 0.6606 37 1 1.4197 -3.2598 2.8053 38 1 2.3511 -1.9258 3.5615 39 1 -0.4307 -2.9061 4.1764 40 1 0.7563 -2.1238 5.2571 41 1 -4.2300 0.9265 6.9201 42 1 1.0413 0.5575 3.2629 43 1 -0.4809 0.4150 2.3332 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592870028.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:35 Heat of formation + Delta-G solvation = -75.283858 kcal Electronic energy + Delta-G solvation = -21225.188874 eV Core-core repulsion = 18268.365215 eV Total energy + Delta-G solvation = -2956.823660 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.22158 -39.41150 -37.32807 -34.67731 -33.20697 -32.82800 -30.16422 -29.09410 -28.34787 -27.16846 -25.39597 -23.85773 -22.20001 -21.09925 -20.75286 -19.20278 -18.57539 -17.65747 -16.90553 -16.38195 -16.14761 -15.64537 -15.42645 -14.79919 -14.64849 -14.39411 -14.34688 -13.92154 -13.80422 -13.40738 -13.14345 -12.98440 -12.89182 -12.69190 -12.58891 -12.54378 -12.31440 -12.21980 -12.05212 -11.78216 -11.58372 -11.36336 -11.30488 -11.25907 -10.95963 -10.93734 -10.91735 -9.90081 -9.07254 -8.32017 -6.88305 1.37023 1.41163 1.53061 2.22050 2.42299 2.89690 3.53550 3.54843 3.67508 3.72616 3.93574 4.00468 4.20119 4.34162 4.40744 4.48824 4.52860 4.55811 4.67837 4.74720 4.78534 4.80026 4.85455 4.90911 4.97558 5.01213 5.05768 5.12212 5.15811 5.19037 5.24068 5.27027 5.28405 5.37771 5.43069 5.50167 5.55539 5.61235 5.68375 5.69458 6.02633 6.41919 6.83361 7.47619 8.43300 8.64403 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.036919 B = 0.004638 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.230945 B = 6035.230528 C = 6526.848934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.064 4.064 3 C -0.137 4.137 4 C -0.111 4.111 5 C -0.119 4.119 6 C -0.112 4.112 7 C -0.068 4.068 8 H 0.067 0.933 9 C -0.082 4.082 10 H 0.085 0.915 11 C -0.111 4.111 12 C 0.111 3.889 13 N -0.656 5.656 14 C 0.549 3.451 15 O -0.635 6.635 16 C -0.566 4.566 17 H 0.085 0.915 18 C 0.027 3.973 19 N -0.823 5.823 20 Si 0.999 3.001 21 H -0.253 1.253 22 H -0.272 1.272 23 H -0.253 1.253 24 C 0.113 3.887 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.275 0.725 42 H 0.033 0.967 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.985 -8.050 -12.467 20.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.064 4.064 3 C -0.194 4.194 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.150 4.150 7 C -0.087 4.087 8 H 0.085 0.915 9 C -0.101 4.101 10 H 0.104 0.896 11 C -0.149 4.149 12 C -0.012 4.012 13 N -0.393 5.393 14 C 0.356 3.644 15 O -0.523 6.523 16 C -0.603 4.603 17 H 0.104 0.896 18 C -0.187 4.187 19 N -0.452 5.452 20 Si 0.818 3.182 21 H -0.177 1.177 22 H -0.197 1.197 23 H -0.177 1.177 24 C -0.010 4.010 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.051 0.949 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.551 -7.288 -12.529 19.842 hybrid contribution -0.824 0.335 0.867 1.242 sum 12.727 -6.953 -11.662 18.609 Atomic orbital electron populations 1.22284 0.96005 1.01652 1.01050 1.21189 0.94259 0.95528 0.95407 1.21894 1.01276 0.95204 1.01054 1.22464 0.97581 0.98747 0.96022 1.22460 0.97225 1.00111 0.95868 1.22387 0.99146 0.96962 0.96476 1.21795 0.94660 0.97304 0.94902 0.91464 1.22516 0.97683 0.94591 0.95308 0.89645 1.22694 0.97340 1.00990 0.93853 1.21856 0.94699 0.85578 0.99093 1.48580 1.36306 1.20750 1.33667 1.18440 0.77909 0.85422 0.82666 1.90537 1.63213 1.25189 1.73368 1.21371 1.18890 1.05611 1.14402 0.89646 1.27039 0.95352 0.95624 1.00724 1.70195 1.20214 1.18046 1.36776 0.85059 0.78213 0.78405 0.76540 1.17734 1.19657 1.17660 1.22305 0.95299 0.95731 0.87679 0.94138 0.92573 0.92277 0.91444 0.92301 0.94573 0.91119 0.91575 0.91217 0.90457 0.90729 0.90986 0.87782 0.89946 0.93118 0.93350 0.91505 0.94879 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 7.13 71.98 0.51 -3.57 16 2 C -0.06 -1.40 0.92 -51.42 -0.05 -1.45 16 3 C -0.14 -2.98 8.15 71.98 0.59 -2.39 16 4 C -0.11 -1.88 5.90 31.71 0.19 -1.69 16 5 C -0.12 -1.71 6.91 31.88 0.22 -1.49 16 6 C -0.11 -1.86 5.58 31.67 0.18 -1.69 16 7 C -0.07 -1.52 2.19 -10.07 -0.02 -1.54 16 8 H 0.07 1.61 7.44 -2.39 -0.02 1.59 16 9 C -0.08 -2.36 1.83 -9.40 -0.02 -2.38 16 10 H 0.09 2.51 5.73 -2.39 -0.01 2.50 16 11 C -0.11 -2.92 5.48 31.78 0.17 -2.75 16 12 C 0.11 4.17 6.05 86.73 0.52 4.70 16 13 N -0.66 -32.28 3.33 -816.84 -2.72 -35.00 16 14 C 0.55 34.14 7.78 86.36 0.67 34.81 16 15 O -0.64 -45.31 15.28 -4.29 -0.07 -45.37 16 16 C -0.57 -33.67 9.06 24.83 0.23 -33.45 16 17 H 0.09 4.59 7.16 -2.91 -0.02 4.57 16 18 C 0.03 1.59 5.50 85.30 0.47 2.06 16 19 N -0.82 -52.12 11.83 21.83 0.26 -51.86 16 20 Si 1.00 42.04 29.56 68.60 2.03 44.07 16 21 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 24 C 0.11 4.66 5.78 86.86 0.50 5.17 16 25 H 0.04 1.34 4.97 -2.39 -0.01 1.33 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.58 5.96 -2.39 -0.01 1.56 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.09 7.84 -2.39 -0.02 1.07 16 32 H 0.07 1.12 7.86 -2.39 -0.02 1.11 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.16 7.59 -2.39 -0.02 1.14 16 37 H 0.10 2.10 8.01 -2.39 -0.02 2.08 16 38 H 0.08 1.95 8.04 -2.39 -0.02 1.93 16 39 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.28 15.74 8.29 -92.71 -0.77 14.97 16 42 H 0.03 1.39 7.87 -2.38 -0.02 1.37 16 43 H 0.05 2.13 5.38 -2.39 -0.01 2.11 16 Total: -1.00 -78.74 324.99 4.64 -74.10 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.97 Total: 19.74 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 4.17 Total: -5.67 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -2.46 Total: -86.86 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -0.07 Total: -45.37 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -78.74 4.64 -74.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592870028.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.182 kcal (2) G-P(sol) polarization free energy of solvation -78.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds