Wall clock time and date at job start Mon Mar 30 2020 08:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 110.01675 * 2 1 4 4 C 1.54267 * 110.03326 * 238.55549 * 2 1 3 5 5 C 1.54894 * 104.19556 * 264.32964 * 4 2 1 6 6 C 1.54890 * 102.74718 * 322.05467 * 5 4 2 7 7 C 1.53877 * 110.02860 * 121.39083 * 2 1 3 8 8 H 1.08998 * 110.03654 * 359.94542 * 7 2 1 9 9 C 1.53007 * 110.02922 * 238.56921 * 7 2 1 10 10 H 1.08998 * 110.88537 * 311.46268 * 9 7 2 11 11 C 1.55155 * 111.03860 * 75.37168 * 9 7 2 12 12 C 1.54328 * 103.01945 * 153.39777 * 11 9 7 13 13 N 1.47021 * 107.26993 * 338.13531 * 12 11 9 14 14 C 1.34771 * 125.65003 * 178.85395 * 13 12 11 15 15 O 1.21694 * 119.99851 * 179.69832 * 14 13 12 16 16 C 1.46376 * 120.00204 * 359.69180 * 14 13 12 17 17 H 1.07994 * 119.99308 * 359.72818 * 16 14 13 18 18 C 1.40051 * 119.99645 * 180.02562 * 16 14 13 19 19 N 1.30663 * 120.00233 * 359.72797 * 18 16 14 20 20 Si 1.86798 * 119.99359 * 179.72689 * 18 16 14 21 21 H 1.48493 * 109.47344 * 90.00141 * 20 18 16 22 22 H 1.48508 * 109.47054 * 210.00266 * 20 18 16 23 23 H 1.48500 * 109.47335 * 329.99525 * 20 18 16 24 24 C 1.47428 * 108.69743 * 358.59084 * 13 12 11 25 25 H 1.09004 * 109.47166 * 298.61164 * 1 2 3 26 26 H 1.09001 * 109.46871 * 58.61241 * 1 2 3 27 27 H 1.08999 * 109.47307 * 178.60978 * 1 2 3 28 28 H 1.08999 * 109.46909 * 171.35049 * 3 2 1 29 29 H 1.09002 * 109.47355 * 291.34997 * 3 2 1 30 30 H 1.09001 * 109.47422 * 51.35276 * 3 2 1 31 31 H 1.09000 * 110.48119 * 23.00338 * 4 2 1 32 32 H 1.08992 * 110.48752 * 145.64690 * 4 2 1 33 33 H 1.08998 * 110.75834 * 80.36901 * 5 4 2 34 34 H 1.09003 * 110.75357 * 203.56217 * 5 4 2 35 35 H 1.09004 * 110.49127 * 279.27034 * 6 5 4 36 36 H 1.08997 * 110.49076 * 156.62084 * 6 5 4 37 37 H 1.09005 * 110.71609 * 271.95238 * 11 9 7 38 38 H 1.08999 * 110.71855 * 35.04716 * 11 9 7 39 39 H 1.09005 * 109.99004 * 218.66052 * 12 11 9 40 40 H 1.08996 * 109.78627 * 97.49892 * 12 11 9 41 41 H 0.97003 * 119.99773 * 179.97438 * 19 18 16 42 42 H 1.09004 * 110.36597 * 143.19575 * 24 13 12 43 43 H 1.08997 * 110.36812 * 265.40237 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4375 0.0000 4 6 2.0585 -0.7561 -1.2365 5 6 2.3280 -2.1906 -0.7181 6 6 2.8874 -1.9404 0.7045 7 6 2.0570 -0.7530 1.2341 8 1 1.2229 -1.1176 1.8335 9 6 2.9408 0.1713 2.0741 10 1 3.6732 0.6822 1.4492 11 6 2.0829 1.1893 2.8711 12 6 2.9726 1.5153 4.0892 13 7 3.9176 0.4006 4.2503 14 6 4.8790 0.3156 5.1910 15 8 5.6039 -0.6609 5.2335 16 6 5.0514 1.3979 6.1613 17 1 4.4109 2.2665 6.1206 18 6 6.0508 1.3096 7.1385 19 7 6.8259 0.2588 7.1872 20 14 6.2756 2.6943 8.3720 21 1 5.4319 2.4352 9.5662 22 1 7.7017 2.7673 8.7797 23 1 5.8721 3.9812 7.7505 24 6 3.6353 -0.6116 3.2163 25 1 -0.3634 0.4921 0.9022 26 1 -0.3633 0.5352 -0.8773 27 1 -0.3634 -1.0273 -0.0249 28 1 3.1327 1.4311 0.1546 29 1 1.8266 1.9070 -0.9571 30 1 1.5751 1.9987 0.8026 31 1 1.3061 -0.7705 -2.0250 32 1 2.9811 -0.3009 -1.5965 33 1 1.4030 -2.7655 -0.6738 34 1 3.0652 -2.6949 -1.3428 35 1 3.9440 -1.6764 0.6580 36 1 2.7401 -2.8191 1.3324 37 1 1.8953 2.0839 2.2771 38 1 1.1444 0.7362 3.1903 39 1 2.3580 1.6125 4.9842 40 1 3.5188 2.4414 3.9099 41 1 7.5183 0.1980 7.8638 42 1 4.5632 -1.0590 2.8600 43 1 2.9708 -1.3808 3.6098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592870029.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:40 Heat of formation + Delta-G solvation = -53.736554 kcal Electronic energy + Delta-G solvation = -21143.906108 eV Core-core repulsion = 18188.016809 eV Total energy + Delta-G solvation = -2955.889298 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.09323 -37.73001 -35.45709 -32.51183 -32.32237 -31.28871 -28.84259 -27.40992 -27.24156 -25.60067 -24.35142 -22.48823 -20.53459 -20.28028 -18.92387 -18.19796 -16.69099 -15.76655 -15.53523 -15.35156 -14.61320 -14.21337 -13.70648 -13.63330 -13.38513 -13.11961 -12.99148 -12.81719 -12.30229 -11.97028 -11.85003 -11.73689 -11.42301 -11.24794 -11.14694 -10.98107 -10.92025 -10.81150 -10.56359 -10.53758 -10.46396 -10.34914 -10.18217 -9.99333 -9.86070 -9.82760 -8.83061 -7.59550 -7.10328 -6.16965 -4.61268 3.15273 3.21809 3.25439 4.11022 4.51726 4.54208 4.56566 4.60128 4.79258 5.12161 5.17356 5.22672 5.31453 5.33134 5.37537 5.51067 5.64019 5.65287 5.72054 5.77172 5.79831 5.82514 5.88844 5.95732 5.98490 6.03291 6.08836 6.10882 6.12610 6.21874 6.37753 6.40831 6.44583 6.46767 6.55923 6.61273 6.75700 6.83052 7.45308 7.48644 8.15320 8.47300 9.04703 9.55932 10.61271 10.80575 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.037396 B = 0.004492 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.571249 B = 6231.474154 C = 6712.899054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.063 4.063 3 C -0.155 4.155 4 C -0.115 4.115 5 C -0.125 4.125 6 C -0.121 4.121 7 C -0.069 4.069 8 H 0.072 0.928 9 C -0.097 4.097 10 H 0.086 0.914 11 C -0.133 4.133 12 C 0.120 3.880 13 N -0.646 5.646 14 C 0.570 3.430 15 O -0.578 6.578 16 C -0.539 4.539 17 H 0.069 0.931 18 C 0.087 3.913 19 N -0.769 5.769 20 Si 0.907 3.093 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.265 1.265 24 C 0.122 3.878 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.268 0.732 42 H 0.060 0.940 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.864 1.147 -14.485 18.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.063 4.063 3 C -0.211 4.211 4 C -0.152 4.152 5 C -0.162 4.162 6 C -0.159 4.159 7 C -0.088 4.088 8 H 0.090 0.910 9 C -0.116 4.116 10 H 0.104 0.896 11 C -0.171 4.171 12 C -0.004 4.004 13 N -0.386 5.386 14 C 0.377 3.623 15 O -0.461 6.461 16 C -0.576 4.576 17 H 0.087 0.913 18 C -0.133 4.133 19 N -0.398 5.398 20 Si 0.732 3.268 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.189 1.189 24 C -0.002 4.002 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.223 0.505 -14.282 18.171 hybrid contribution 0.015 0.726 0.658 0.980 sum -11.208 1.231 -13.624 17.685 Atomic orbital electron populations 1.21902 0.94715 1.01348 1.01406 1.21139 0.95081 0.95392 0.94645 1.22342 1.01939 0.95483 1.01345 1.22480 1.00559 0.95437 0.96766 1.22475 1.00458 0.96599 0.96678 1.22437 0.99974 0.97867 0.95583 1.21803 0.97400 0.94556 0.95071 0.90963 1.22587 0.97278 0.96079 0.95679 0.89619 1.22997 0.98183 0.99263 0.96621 1.21581 0.91193 0.91415 0.96234 1.48687 1.36376 1.19767 1.33775 1.18027 0.77517 0.87655 0.79113 1.90604 1.46449 1.34974 1.74060 1.20905 1.18235 1.04532 1.13890 0.91329 1.25729 0.94434 0.95821 0.97285 1.70025 1.14198 1.26233 1.29318 0.86377 0.77898 0.81783 0.80744 1.19722 1.20431 1.18888 1.21812 0.98493 0.91904 0.88008 0.92609 0.93098 0.92888 0.91696 0.93623 0.91313 0.92114 0.91674 0.91906 0.91958 0.91231 0.91685 0.90389 0.91596 0.93214 0.93095 0.92120 0.92114 0.94108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.14 37.16 0.30 -0.95 16 2 C -0.06 -0.64 0.90 -153.39 -0.14 -0.78 16 3 C -0.15 -1.59 7.07 37.16 0.26 -1.33 16 4 C -0.11 -1.11 5.90 -25.07 -0.15 -1.26 16 5 C -0.12 -1.24 6.91 -24.74 -0.17 -1.41 16 6 C -0.12 -1.45 5.63 -25.07 -0.14 -1.59 16 7 C -0.07 -0.84 2.16 -89.50 -0.19 -1.03 16 8 H 0.07 0.89 7.50 -51.93 -0.39 0.50 16 9 C -0.10 -1.43 1.80 -88.47 -0.16 -1.59 16 10 H 0.09 1.29 5.84 -51.93 -0.30 0.99 16 11 C -0.13 -1.90 5.66 -24.90 -0.14 -2.04 16 12 C 0.12 2.29 6.05 -3.06 -0.02 2.27 16 13 N -0.65 -15.40 3.33 -172.17 -0.57 -15.97 16 14 C 0.57 16.96 7.78 -12.99 -0.10 16.86 16 15 O -0.58 -19.46 15.28 5.19 0.08 -19.38 16 16 C -0.54 -15.65 9.06 -35.63 -0.32 -15.97 16 17 H 0.07 1.84 7.16 -52.49 -0.38 1.46 16 18 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 19 N -0.77 -23.51 11.83 55.55 0.66 -22.85 16 20 Si 0.91 20.46 29.56 -169.99 -5.02 15.44 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 24 C 0.12 2.43 5.55 -2.53 -0.01 2.41 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.73 5.85 -51.93 -0.30 0.43 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.70 4.99 -51.93 -0.26 0.44 16 31 H 0.06 0.53 7.84 -51.93 -0.41 0.12 16 32 H 0.06 0.64 7.86 -51.93 -0.41 0.23 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.91 7.69 -51.93 -0.40 0.51 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.94 5.46 -51.93 -0.28 0.66 16 38 H 0.07 0.88 7.91 -51.93 -0.41 0.47 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 42 H 0.06 1.31 7.94 -51.93 -0.41 0.90 16 43 H 0.04 0.81 8.04 -51.93 -0.42 0.39 16 LS Contribution 325.07 15.07 4.90 4.90 Total: -1.00 -34.13 325.07 -8.35 -42.48 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.31 Total: -0.59 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -1.08 Total: -4.02 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.08 Total: -38.82 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.08 Total: -19.38 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.13 -8.35 -42.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592870029.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.256 kcal (2) G-P(sol) polarization free energy of solvation -34.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds