Wall clock time and date at job start Mon Mar 30 2020 08:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 110.01675 * 2 1 4 4 C 1.54267 * 110.03326 * 238.55549 * 2 1 3 5 5 C 1.54894 * 104.19556 * 264.32964 * 4 2 1 6 6 C 1.54890 * 102.74718 * 322.05467 * 5 4 2 7 7 C 1.53877 * 110.02860 * 121.39083 * 2 1 3 8 8 H 1.08998 * 110.03654 * 359.94542 * 7 2 1 9 9 C 1.53007 * 110.02922 * 238.56921 * 7 2 1 10 10 H 1.08998 * 110.88537 * 311.46268 * 9 7 2 11 11 C 1.55155 * 111.03860 * 75.37168 * 9 7 2 12 12 C 1.54328 * 103.01945 * 153.39777 * 11 9 7 13 13 N 1.47021 * 107.26993 * 338.13531 * 12 11 9 14 14 C 1.34771 * 125.65003 * 178.85395 * 13 12 11 15 15 O 1.21694 * 119.99851 * 179.69832 * 14 13 12 16 16 C 1.46376 * 120.00204 * 359.69180 * 14 13 12 17 17 H 1.07994 * 119.99308 * 359.72818 * 16 14 13 18 18 C 1.40051 * 119.99645 * 180.02562 * 16 14 13 19 19 N 1.30663 * 120.00233 * 359.72797 * 18 16 14 20 20 Si 1.86798 * 119.99359 * 179.72689 * 18 16 14 21 21 H 1.48493 * 109.47344 * 90.00141 * 20 18 16 22 22 H 1.48508 * 109.47054 * 210.00266 * 20 18 16 23 23 H 1.48500 * 109.47335 * 329.99525 * 20 18 16 24 24 C 1.47428 * 108.69743 * 358.59084 * 13 12 11 25 25 H 1.09004 * 109.47166 * 298.61164 * 1 2 3 26 26 H 1.09001 * 109.46871 * 58.61241 * 1 2 3 27 27 H 1.08999 * 109.47307 * 178.60978 * 1 2 3 28 28 H 1.08999 * 109.46909 * 171.35049 * 3 2 1 29 29 H 1.09002 * 109.47355 * 291.34997 * 3 2 1 30 30 H 1.09001 * 109.47422 * 51.35276 * 3 2 1 31 31 H 1.09000 * 110.48119 * 23.00338 * 4 2 1 32 32 H 1.08992 * 110.48752 * 145.64690 * 4 2 1 33 33 H 1.08998 * 110.75834 * 80.36901 * 5 4 2 34 34 H 1.09003 * 110.75357 * 203.56217 * 5 4 2 35 35 H 1.09004 * 110.49127 * 279.27034 * 6 5 4 36 36 H 1.08997 * 110.49076 * 156.62084 * 6 5 4 37 37 H 1.09005 * 110.71609 * 271.95238 * 11 9 7 38 38 H 1.08999 * 110.71855 * 35.04716 * 11 9 7 39 39 H 1.09005 * 109.99004 * 218.66052 * 12 11 9 40 40 H 1.08996 * 109.78627 * 97.49892 * 12 11 9 41 41 H 0.97003 * 119.99773 * 179.97438 * 19 18 16 42 42 H 1.09004 * 110.36597 * 143.19575 * 24 13 12 43 43 H 1.08997 * 110.36812 * 265.40237 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4375 0.0000 4 6 2.0585 -0.7561 -1.2365 5 6 2.3280 -2.1906 -0.7181 6 6 2.8874 -1.9404 0.7045 7 6 2.0570 -0.7530 1.2341 8 1 1.2229 -1.1176 1.8335 9 6 2.9408 0.1713 2.0741 10 1 3.6732 0.6822 1.4492 11 6 2.0829 1.1893 2.8711 12 6 2.9726 1.5153 4.0892 13 7 3.9176 0.4006 4.2503 14 6 4.8790 0.3156 5.1910 15 8 5.6039 -0.6609 5.2335 16 6 5.0514 1.3979 6.1613 17 1 4.4109 2.2665 6.1206 18 6 6.0508 1.3096 7.1385 19 7 6.8259 0.2588 7.1872 20 14 6.2756 2.6943 8.3720 21 1 5.4319 2.4352 9.5662 22 1 7.7017 2.7673 8.7797 23 1 5.8721 3.9812 7.7505 24 6 3.6353 -0.6116 3.2163 25 1 -0.3634 0.4921 0.9022 26 1 -0.3633 0.5352 -0.8773 27 1 -0.3634 -1.0273 -0.0249 28 1 3.1327 1.4311 0.1546 29 1 1.8266 1.9070 -0.9571 30 1 1.5751 1.9987 0.8026 31 1 1.3061 -0.7705 -2.0250 32 1 2.9811 -0.3009 -1.5965 33 1 1.4030 -2.7655 -0.6738 34 1 3.0652 -2.6949 -1.3428 35 1 3.9440 -1.6764 0.6580 36 1 2.7401 -2.8191 1.3324 37 1 1.8953 2.0839 2.2771 38 1 1.1444 0.7362 3.1903 39 1 2.3580 1.6125 4.9842 40 1 3.5188 2.4414 3.9099 41 1 7.5183 0.1980 7.8638 42 1 4.5632 -1.0590 2.8600 43 1 2.9708 -1.3808 3.6098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592870029.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:39 Heat of formation + Delta-G solvation = -74.906314 kcal Electronic energy + Delta-G solvation = -21144.824097 eV Core-core repulsion = 18188.016809 eV Total energy + Delta-G solvation = -2956.807288 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.22403 -39.44159 -37.32591 -34.68363 -33.26707 -32.77141 -30.24618 -29.02443 -28.21281 -27.21603 -25.33621 -24.06071 -21.74026 -21.59900 -20.64746 -19.16178 -18.57591 -17.66919 -16.96686 -16.43087 -16.14583 -15.66185 -15.38877 -14.96734 -14.45607 -14.35379 -14.10613 -13.95104 -13.75644 -13.58706 -13.13927 -13.04948 -12.89376 -12.72200 -12.55821 -12.51078 -12.32905 -12.18931 -12.02626 -11.82142 -11.60407 -11.36452 -11.24573 -11.20862 -10.97155 -10.95076 -10.88992 -9.90786 -9.09339 -8.32616 -6.88799 1.37300 1.39521 1.55055 2.21941 2.41765 2.88323 3.50412 3.54510 3.65759 3.74376 3.93932 4.01592 4.18681 4.33768 4.42118 4.50199 4.51749 4.60223 4.69678 4.71351 4.77536 4.80452 4.89196 4.90802 4.96031 5.05408 5.09208 5.11414 5.13005 5.20818 5.24565 5.28349 5.31723 5.35182 5.42487 5.54311 5.57159 5.62144 5.66284 5.74195 6.02156 6.40944 6.83005 7.46863 8.42577 8.64019 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.037396 B = 0.004492 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.571249 B = 6231.474154 C = 6712.899054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.058 4.058 3 C -0.155 4.155 4 C -0.113 4.113 5 C -0.119 4.119 6 C -0.127 4.127 7 C -0.065 4.065 8 H 0.075 0.925 9 C -0.079 4.079 10 H 0.084 0.916 11 C -0.116 4.116 12 C 0.111 3.889 13 N -0.655 5.655 14 C 0.548 3.452 15 O -0.636 6.636 16 C -0.565 4.565 17 H 0.086 0.914 18 C 0.027 3.973 19 N -0.823 5.823 20 Si 1.000 3.000 21 H -0.260 1.260 22 H -0.271 1.271 23 H -0.248 1.248 24 C 0.118 3.882 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.111 0.889 38 H 0.082 0.918 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.275 0.725 42 H 0.030 0.970 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.159 3.312 -15.462 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.058 4.058 3 C -0.212 4.212 4 C -0.150 4.150 5 C -0.156 4.156 6 C -0.165 4.165 7 C -0.084 4.084 8 H 0.093 0.907 9 C -0.098 4.098 10 H 0.102 0.898 11 C -0.153 4.153 12 C -0.012 4.012 13 N -0.393 5.393 14 C 0.355 3.645 15 O -0.524 6.524 16 C -0.601 4.601 17 H 0.104 0.896 18 C -0.188 4.188 19 N -0.453 5.453 20 Si 0.819 3.181 21 H -0.184 1.184 22 H -0.196 1.196 23 H -0.171 1.171 24 C -0.006 4.006 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.129 0.871 38 H 0.101 0.899 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.048 0.952 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.579 2.689 -15.309 20.639 hybrid contribution 0.728 -0.013 0.918 1.172 sum -12.851 2.675 -14.391 19.479 Atomic orbital electron populations 1.21887 0.93281 1.01850 1.02160 1.21111 0.96112 0.95098 0.93487 1.22330 1.00944 0.95534 1.02345 1.22485 1.00920 0.94720 0.96911 1.22452 1.00902 0.97324 0.94949 1.22448 0.99086 0.97663 0.97289 1.21790 0.96733 0.94137 0.95695 0.90676 1.22499 0.97381 0.95892 0.94044 0.89790 1.23000 0.97395 1.00468 0.94459 1.21873 0.90911 0.89824 0.98576 1.48560 1.35771 1.21879 1.33063 1.18475 0.78232 0.87402 0.80413 1.90541 1.49020 1.36870 1.75973 1.21398 1.19252 1.05019 1.14481 0.89563 1.27055 0.93291 0.99008 0.99447 1.70201 1.15132 1.29231 1.30713 0.84991 0.78293 0.77605 0.77231 1.18416 1.19555 1.17074 1.21985 0.97611 0.91945 0.89015 0.92433 0.91780 0.92607 0.93149 0.92153 0.90943 0.90377 0.92060 0.90806 0.91496 0.93137 0.92553 0.87056 0.89905 0.93255 0.93099 0.91492 0.95152 0.94406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 8.14 71.98 0.59 -1.36 16 2 C -0.06 -1.02 0.90 -51.46 -0.05 -1.06 16 3 C -0.16 -2.71 7.07 71.98 0.51 -2.20 16 4 C -0.11 -1.87 5.90 31.67 0.19 -1.69 16 5 C -0.12 -2.16 6.91 31.89 0.22 -1.94 16 6 C -0.13 -3.04 5.63 31.67 0.18 -2.86 16 7 C -0.06 -1.47 2.16 -10.07 -0.02 -1.49 16 8 H 0.07 1.70 7.50 -2.39 -0.02 1.68 16 9 C -0.08 -2.29 1.80 -9.40 -0.02 -2.31 16 10 H 0.08 2.50 5.84 -2.39 -0.01 2.48 16 11 C -0.12 -3.04 5.66 31.78 0.18 -2.86 16 12 C 0.11 4.17 6.05 86.73 0.52 4.69 16 13 N -0.66 -32.32 3.33 -816.86 -2.72 -35.03 16 14 C 0.55 34.15 7.78 86.36 0.67 34.82 16 15 O -0.64 -45.54 15.28 -4.33 -0.07 -45.61 16 16 C -0.57 -33.58 9.06 24.83 0.23 -33.35 16 17 H 0.09 4.63 7.16 -2.91 -0.02 4.61 16 18 C 0.03 1.55 5.50 85.31 0.47 2.01 16 19 N -0.82 -52.17 11.83 21.84 0.26 -51.91 16 20 Si 1.00 41.98 29.56 68.60 2.03 44.01 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 22 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 23 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 24 C 0.12 4.91 5.55 86.85 0.48 5.39 16 25 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 1.04 5.85 -2.39 -0.01 1.02 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 1.19 4.99 -2.39 -0.01 1.18 16 31 H 0.08 1.06 7.84 -2.39 -0.02 1.05 16 32 H 0.06 1.07 7.86 -2.39 -0.02 1.06 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.05 1.38 7.69 -2.39 -0.02 1.36 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.11 2.26 5.46 -2.38 -0.01 2.25 16 38 H 0.08 1.95 7.91 -2.39 -0.02 1.93 16 39 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.28 15.70 8.29 -92.71 -0.77 14.93 16 42 H 0.03 1.41 7.94 -2.38 -0.02 1.40 16 43 H 0.04 1.57 8.04 -2.39 -0.02 1.55 16 Total: -1.00 -78.98 325.07 4.62 -74.35 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.97 Total: 18.40 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 4.15 Total: -4.21 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -2.46 Total: -86.95 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -0.07 Total: -45.61 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -78.98 4.62 -74.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592870029.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.555 kcal (2) G-P(sol) polarization free energy of solvation -78.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds