Wall clock time and date at job start Mon Mar 30 2020 08:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 110.01975 * 2 1 4 4 C 1.54273 * 110.03118 * 238.55785 * 2 1 3 5 5 C 1.54887 * 104.19465 * 217.10718 * 4 2 1 6 6 C 1.54887 * 102.74866 * 37.94407 * 5 4 2 7 7 C 1.53872 * 110.03228 * 121.39275 * 2 1 3 8 8 H 1.08997 * 110.03333 * 238.61569 * 7 2 1 9 9 C 1.53002 * 110.03229 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.91437 * 305.06926 * 9 7 2 11 11 C 1.55153 * 111.00494 * 181.17146 * 9 7 2 12 12 C 1.54330 * 102.94278 * 206.42104 * 11 9 7 13 13 N 1.47026 * 107.26933 * 22.19179 * 12 11 9 14 14 C 1.34774 * 125.64618 * 181.02168 * 13 12 11 15 15 O 1.21684 * 119.99534 * 180.02562 * 14 13 12 16 16 C 1.46369 * 120.00041 * 0.02731 * 14 13 12 17 17 H 1.07997 * 120.00207 * 6.81376 * 16 14 13 18 18 C 1.40046 * 120.00175 * 186.81909 * 16 14 13 19 19 N 1.30680 * 119.99762 * 6.79203 * 18 16 14 20 20 Si 1.86803 * 120.00540 * 186.79254 * 18 16 14 21 21 H 1.48498 * 109.46999 * 265.01178 * 20 18 16 22 22 H 1.48494 * 109.47318 * 145.00829 * 20 18 16 23 23 H 1.48503 * 109.46696 * 25.00803 * 20 18 16 24 24 C 1.47430 * 108.70101 * 1.28853 * 13 12 11 25 25 H 1.08998 * 109.47189 * 278.60040 * 1 2 3 26 26 H 1.09001 * 109.47148 * 38.59814 * 1 2 3 27 27 H 1.09005 * 109.47541 * 158.59682 * 1 2 3 28 28 H 1.09000 * 109.47628 * 181.39321 * 3 2 1 29 29 H 1.09005 * 109.47715 * 301.39348 * 3 2 1 30 30 H 1.09000 * 109.47202 * 61.38991 * 3 2 1 31 31 H 1.09000 * 110.48536 * 335.78609 * 4 2 1 32 32 H 1.08997 * 110.48524 * 98.42853 * 4 2 1 33 33 H 1.08997 * 110.75562 * 156.26220 * 5 4 2 34 34 H 1.09003 * 110.75602 * 279.63113 * 5 4 2 35 35 H 1.09007 * 110.48767 * 203.38103 * 6 5 4 36 36 H 1.08999 * 110.48611 * 80.73545 * 6 5 4 37 37 H 1.08995 * 110.72243 * 88.05840 * 11 9 7 38 38 H 1.09002 * 110.72216 * 324.78390 * 11 9 7 39 39 H 1.09002 * 109.88130 * 262.77597 * 12 11 9 40 40 H 1.08999 * 110.00810 * 141.68288 * 12 11 9 41 41 H 0.97001 * 119.99742 * 180.02562 * 19 18 16 42 42 H 1.09002 * 110.36647 * 94.48414 * 24 13 12 43 43 H 1.08998 * 110.36365 * 216.80526 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4375 0.0000 4 6 2.0584 -0.7561 -1.2366 5 6 3.3136 -1.5011 -0.7185 6 6 2.8873 -1.9404 0.7043 7 6 2.0571 -0.7530 1.2340 8 1 2.6860 -0.0944 1.8329 9 6 0.8861 -1.2666 2.0743 10 1 0.2114 -0.4527 2.3400 11 6 1.3925 -2.0051 3.3413 12 6 0.2414 -2.9843 3.6540 13 7 -0.5130 -3.1833 2.4078 14 6 -1.6082 -3.9561 2.2675 15 8 -2.1535 -4.0474 1.1836 16 6 -2.1417 -4.6853 3.4190 17 1 -1.7270 -4.5199 4.4024 18 6 -3.1899 -5.5978 3.2457 19 7 -3.6028 -5.8976 2.0426 20 14 -3.9979 -6.3862 4.7340 21 1 -3.3666 -7.7037 5.0000 22 1 -5.4465 -6.5760 4.4683 23 1 -3.8227 -5.5055 5.9168 24 6 0.1309 -2.4026 1.3357 25 1 -0.3633 0.1537 1.0161 26 1 -0.3633 0.8032 -0.6411 27 1 -0.3634 -0.9568 -0.3750 28 1 3.1434 1.4272 -0.0250 29 1 1.6752 1.9622 -0.8772 30 1 1.7158 1.9473 0.9022 31 1 1.3142 -1.4667 -1.5960 32 1 2.3297 -0.0546 -2.0255 33 1 3.5324 -2.3685 -1.3413 34 1 4.1709 -0.8294 -0.6748 35 1 3.7636 -2.1032 1.3319 36 1 2.2770 -2.8423 0.6582 37 1 1.5372 -1.3048 4.1639 38 1 2.3136 -2.5479 3.1291 39 1 -0.4099 -2.5590 4.4177 40 1 0.6449 -3.9362 3.9992 41 1 -4.3291 -6.5293 1.9225 42 1 0.8302 -3.0269 0.7794 43 1 -0.6213 -1.9849 0.6665 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592870030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:44 Heat of formation + Delta-G solvation = -41.787314 kcal Electronic energy + Delta-G solvation = -21449.659138 eV Core-core repulsion = 18494.287998 eV Total energy + Delta-G solvation = -2955.371141 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.27345 -37.58841 -35.42371 -32.48147 -32.21152 -31.28218 -28.98303 -27.77048 -26.70922 -25.33959 -24.45776 -22.40228 -21.42474 -19.62951 -18.98301 -17.89060 -16.57447 -15.91554 -15.47448 -15.11596 -14.72340 -14.21706 -13.85055 -13.61354 -13.42920 -13.09112 -12.84342 -12.70323 -12.50738 -11.90400 -11.77955 -11.55038 -11.35258 -11.20130 -11.02352 -10.98620 -10.77346 -10.69470 -10.50446 -10.45963 -10.34617 -10.28082 -10.11648 -10.01175 -9.88335 -9.69685 -8.81510 -7.58822 -7.05678 -6.19985 -4.59868 3.14682 3.22137 3.26434 4.11524 4.55449 4.57870 4.59693 4.67596 4.84810 5.12452 5.24565 5.26793 5.35435 5.39587 5.50926 5.60774 5.65798 5.68315 5.76006 5.81475 5.85571 5.87091 5.94268 6.00640 6.03415 6.07832 6.16143 6.17660 6.23408 6.25113 6.39063 6.48662 6.50212 6.53807 6.63467 6.71772 6.80769 6.88155 7.45999 7.49840 8.16073 8.48413 9.05118 9.56319 10.61004 10.79975 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.033984 B = 0.004881 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.720238 B = 5735.336804 C = 5964.116431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.064 4.064 3 C -0.135 4.135 4 C -0.116 4.116 5 C -0.123 4.123 6 C -0.133 4.133 7 C -0.068 4.068 8 H 0.070 0.930 9 C -0.098 4.098 10 H 0.083 0.917 11 C -0.130 4.130 12 C 0.121 3.879 13 N -0.646 5.646 14 C 0.573 3.427 15 O -0.580 6.580 16 C -0.541 4.541 17 H 0.069 0.931 18 C 0.089 3.911 19 N -0.771 5.771 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.264 1.264 24 C 0.104 3.896 25 H 0.067 0.933 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.268 0.732 42 H 0.053 0.947 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.737 10.946 -0.939 16.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.064 4.064 3 C -0.192 4.192 4 C -0.153 4.153 5 C -0.161 4.161 6 C -0.170 4.170 7 C -0.087 4.087 8 H 0.088 0.912 9 C -0.117 4.117 10 H 0.102 0.898 11 C -0.168 4.168 12 C -0.004 4.004 13 N -0.386 5.386 14 C 0.380 3.620 15 O -0.463 6.463 16 C -0.578 4.578 17 H 0.087 0.913 18 C -0.131 4.131 19 N -0.399 5.399 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.188 1.188 24 C -0.019 4.019 25 H 0.086 0.914 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.209 10.726 -1.665 16.336 hybrid contribution -0.302 -0.382 0.882 1.007 sum 11.907 10.344 -0.783 15.792 Atomic orbital electron populations 1.22548 0.94293 1.02329 1.02542 1.21143 0.95722 0.94732 0.94768 1.21899 1.00409 0.95547 1.01345 1.22546 0.97425 0.98708 0.96670 1.22449 0.97437 0.99522 0.96669 1.22717 0.99338 0.99257 0.95640 1.21711 0.95639 0.96185 0.95181 0.91155 1.22550 0.96458 0.97622 0.95077 0.89847 1.22733 0.98415 0.98129 0.97560 1.21554 0.92153 0.97461 0.89209 1.48714 1.30455 1.51469 1.07976 1.17988 0.76962 0.77493 0.89587 1.90591 1.60113 1.66480 1.29141 1.20898 1.18720 1.24404 0.93755 0.91326 1.25709 0.95790 0.95349 0.96221 1.70000 1.22114 1.25854 1.21970 0.86383 0.78690 0.79634 0.82225 1.19849 1.20363 1.18821 1.22592 0.95977 0.91446 0.91889 0.91426 0.93611 0.90844 0.92985 0.93008 0.92858 0.91244 0.92143 0.91919 0.92096 0.92174 0.89757 0.91431 0.91316 0.93198 0.93140 0.92090 0.92913 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 7.11 37.16 0.26 -1.90 16 2 C -0.06 -0.75 0.87 -153.39 -0.13 -0.88 16 3 C -0.13 -1.35 8.05 37.15 0.30 -1.05 16 4 C -0.12 -1.34 5.90 -25.07 -0.15 -1.48 16 5 C -0.12 -1.34 6.91 -24.74 -0.17 -1.51 16 6 C -0.13 -1.61 5.11 -25.07 -0.13 -1.74 16 7 C -0.07 -0.83 2.50 -89.50 -0.22 -1.06 16 8 H 0.07 0.79 7.67 -51.93 -0.40 0.39 16 9 C -0.10 -1.45 2.19 -88.35 -0.19 -1.65 16 10 H 0.08 1.26 6.13 -51.93 -0.32 0.94 16 11 C -0.13 -1.89 6.33 -24.90 -0.16 -2.05 16 12 C 0.12 2.30 6.07 -3.06 -0.02 2.28 16 13 N -0.65 -15.23 3.33 -172.03 -0.57 -15.80 16 14 C 0.57 16.89 7.75 -12.99 -0.10 16.79 16 15 O -0.58 -19.30 15.37 5.20 0.08 -19.22 16 16 C -0.54 -15.66 9.04 -35.63 -0.32 -15.98 16 17 H 0.07 1.84 7.17 -52.49 -0.38 1.46 16 18 C 0.09 2.52 5.48 -17.36 -0.10 2.43 16 19 N -0.77 -23.45 11.91 55.55 0.66 -22.78 16 20 Si 0.91 20.44 29.56 -169.99 -5.03 15.42 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.26 -5.78 7.11 56.52 0.40 -5.37 16 24 C 0.10 2.02 5.26 -2.41 -0.01 2.01 16 25 H 0.07 0.95 5.30 -51.93 -0.28 0.68 16 26 H 0.04 0.56 7.96 -51.93 -0.41 0.14 16 27 H 0.07 1.15 4.99 -51.93 -0.26 0.89 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.49 8.12 -51.93 -0.42 0.07 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.89 7.51 -51.93 -0.39 0.50 16 32 H 0.06 0.62 7.84 -51.93 -0.41 0.22 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.67 8.12 -51.93 -0.42 0.24 16 36 H 0.08 1.22 5.01 -51.93 -0.26 0.96 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.93 7.13 -51.93 -0.37 0.56 16 39 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 42 H 0.05 1.03 5.17 -51.93 -0.27 0.76 16 43 H 0.08 1.59 4.87 -51.93 -0.25 1.34 16 LS Contribution 318.33 15.07 4.80 4.80 Total: -1.00 -33.70 318.33 -8.13 -41.83 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.92 Total: 1.55 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -1.14 Total: -5.79 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.09 Total: -38.59 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: 0.08 Total: -19.22 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.42 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.70 -8.13 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592870030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.040 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds