Wall clock time and date at job start Mon Mar 30 2020 08:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 110.01975 * 2 1 4 4 C 1.54273 * 110.03118 * 238.55785 * 2 1 3 5 5 C 1.54887 * 104.19465 * 217.10718 * 4 2 1 6 6 C 1.54887 * 102.74866 * 37.94407 * 5 4 2 7 7 C 1.53872 * 110.03228 * 121.39275 * 2 1 3 8 8 H 1.08997 * 110.03333 * 238.61569 * 7 2 1 9 9 C 1.53002 * 110.03229 * 0.02562 * 7 2 1 10 10 H 1.09002 * 110.91437 * 305.06926 * 9 7 2 11 11 C 1.55153 * 111.00494 * 181.17146 * 9 7 2 12 12 C 1.54330 * 102.94278 * 206.42104 * 11 9 7 13 13 N 1.47026 * 107.26933 * 22.19179 * 12 11 9 14 14 C 1.34774 * 125.64618 * 181.02168 * 13 12 11 15 15 O 1.21684 * 119.99534 * 180.02562 * 14 13 12 16 16 C 1.46369 * 120.00041 * 0.02731 * 14 13 12 17 17 H 1.07997 * 120.00207 * 6.81376 * 16 14 13 18 18 C 1.40046 * 120.00175 * 186.81909 * 16 14 13 19 19 N 1.30680 * 119.99762 * 6.79203 * 18 16 14 20 20 Si 1.86803 * 120.00540 * 186.79254 * 18 16 14 21 21 H 1.48498 * 109.46999 * 265.01178 * 20 18 16 22 22 H 1.48494 * 109.47318 * 145.00829 * 20 18 16 23 23 H 1.48503 * 109.46696 * 25.00803 * 20 18 16 24 24 C 1.47430 * 108.70101 * 1.28853 * 13 12 11 25 25 H 1.08998 * 109.47189 * 278.60040 * 1 2 3 26 26 H 1.09001 * 109.47148 * 38.59814 * 1 2 3 27 27 H 1.09005 * 109.47541 * 158.59682 * 1 2 3 28 28 H 1.09000 * 109.47628 * 181.39321 * 3 2 1 29 29 H 1.09005 * 109.47715 * 301.39348 * 3 2 1 30 30 H 1.09000 * 109.47202 * 61.38991 * 3 2 1 31 31 H 1.09000 * 110.48536 * 335.78609 * 4 2 1 32 32 H 1.08997 * 110.48524 * 98.42853 * 4 2 1 33 33 H 1.08997 * 110.75562 * 156.26220 * 5 4 2 34 34 H 1.09003 * 110.75602 * 279.63113 * 5 4 2 35 35 H 1.09007 * 110.48767 * 203.38103 * 6 5 4 36 36 H 1.08999 * 110.48611 * 80.73545 * 6 5 4 37 37 H 1.08995 * 110.72243 * 88.05840 * 11 9 7 38 38 H 1.09002 * 110.72216 * 324.78390 * 11 9 7 39 39 H 1.09002 * 109.88130 * 262.77597 * 12 11 9 40 40 H 1.08999 * 110.00810 * 141.68288 * 12 11 9 41 41 H 0.97001 * 119.99742 * 180.02562 * 19 18 16 42 42 H 1.09002 * 110.36647 * 94.48414 * 24 13 12 43 43 H 1.08998 * 110.36365 * 216.80526 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4375 0.0000 4 6 2.0584 -0.7561 -1.2366 5 6 3.3136 -1.5011 -0.7185 6 6 2.8873 -1.9404 0.7043 7 6 2.0571 -0.7530 1.2340 8 1 2.6860 -0.0944 1.8329 9 6 0.8861 -1.2666 2.0743 10 1 0.2114 -0.4527 2.3400 11 6 1.3925 -2.0051 3.3413 12 6 0.2414 -2.9843 3.6540 13 7 -0.5130 -3.1833 2.4078 14 6 -1.6082 -3.9561 2.2675 15 8 -2.1535 -4.0474 1.1836 16 6 -2.1417 -4.6853 3.4190 17 1 -1.7270 -4.5199 4.4024 18 6 -3.1899 -5.5978 3.2457 19 7 -3.6028 -5.8976 2.0426 20 14 -3.9979 -6.3862 4.7340 21 1 -3.3666 -7.7037 5.0000 22 1 -5.4465 -6.5760 4.4683 23 1 -3.8227 -5.5055 5.9168 24 6 0.1309 -2.4026 1.3357 25 1 -0.3633 0.1537 1.0161 26 1 -0.3633 0.8032 -0.6411 27 1 -0.3634 -0.9568 -0.3750 28 1 3.1434 1.4272 -0.0250 29 1 1.6752 1.9622 -0.8772 30 1 1.7158 1.9473 0.9022 31 1 1.3142 -1.4667 -1.5960 32 1 2.3297 -0.0546 -2.0255 33 1 3.5324 -2.3685 -1.3413 34 1 4.1709 -0.8294 -0.6748 35 1 3.7636 -2.1032 1.3319 36 1 2.2770 -2.8423 0.6582 37 1 1.5372 -1.3048 4.1639 38 1 2.3136 -2.5479 3.1291 39 1 -0.4099 -2.5590 4.4177 40 1 0.6449 -3.9362 3.9992 41 1 -4.3291 -6.5293 1.9225 42 1 0.8302 -3.0269 0.7794 43 1 -0.6213 -1.9849 0.6665 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592870030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:21:43 Heat of formation + Delta-G solvation = -62.889924 kcal Electronic energy + Delta-G solvation = -21450.574216 eV Core-core repulsion = 18494.287998 eV Total energy + Delta-G solvation = -2956.286218 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.46712 -39.32749 -37.25837 -34.67961 -33.17105 -32.82247 -30.39438 -29.14867 -28.27949 -26.79776 -25.58414 -23.92430 -22.60306 -21.25428 -20.43480 -19.04534 -18.40706 -17.60828 -17.23249 -16.26915 -16.00365 -15.84327 -15.29488 -15.14782 -14.72258 -14.50927 -14.07610 -13.90392 -13.71783 -13.47824 -13.22968 -13.06475 -12.85594 -12.70218 -12.56787 -12.55407 -12.21877 -12.01489 -11.90659 -11.74305 -11.55723 -11.43835 -11.28938 -11.20472 -10.97910 -10.96107 -10.87883 -9.88514 -9.00245 -8.35106 -6.86547 1.36425 1.38710 1.54854 2.21834 2.42401 2.92353 3.53267 3.55169 3.67839 3.73061 3.91876 4.00456 4.18519 4.31032 4.44218 4.50409 4.54535 4.59573 4.66668 4.68275 4.70422 4.78746 4.89980 4.95123 5.00452 5.01197 5.05405 5.13293 5.16870 5.21660 5.25680 5.28091 5.29078 5.34879 5.44458 5.52098 5.55483 5.61859 5.66996 5.70653 6.03970 6.44343 6.83917 7.49081 8.43927 8.64085 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.033984 B = 0.004881 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.720238 B = 5735.336804 C = 5964.116431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.062 4.062 3 C -0.130 4.130 4 C -0.119 4.119 5 C -0.117 4.117 6 C -0.133 4.133 7 C -0.062 4.062 8 H 0.099 0.901 9 C -0.083 4.083 10 H 0.083 0.917 11 C -0.115 4.115 12 C 0.112 3.888 13 N -0.655 5.655 14 C 0.552 3.448 15 O -0.637 6.637 16 C -0.569 4.569 17 H 0.085 0.915 18 C 0.029 3.971 19 N -0.825 5.825 20 Si 0.998 3.002 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.249 1.249 24 C 0.100 3.900 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.040 0.960 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.046 0.954 41 H 0.275 0.725 42 H 0.049 0.951 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.959 12.398 1.204 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.062 4.062 3 C -0.187 4.187 4 C -0.156 4.156 5 C -0.155 4.155 6 C -0.170 4.170 7 C -0.080 4.080 8 H 0.118 0.882 9 C -0.102 4.102 10 H 0.101 0.899 11 C -0.152 4.152 12 C -0.012 4.012 13 N -0.392 5.392 14 C 0.358 3.642 15 O -0.525 6.525 16 C -0.605 4.605 17 H 0.103 0.897 18 C -0.186 4.186 19 N -0.454 5.454 20 Si 0.817 3.183 21 H -0.183 1.183 22 H -0.196 1.196 23 H -0.172 1.172 24 C -0.022 4.022 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.495 12.216 0.500 18.963 hybrid contribution -0.978 -0.822 0.142 1.286 sum 13.517 11.394 0.642 17.690 Atomic orbital electron populations 1.22485 0.96240 1.00793 1.01926 1.21154 0.94002 0.96381 0.94680 1.21855 1.01349 0.93600 1.01887 1.22548 0.97262 0.98622 0.97193 1.22441 0.97630 0.99805 0.95604 1.22682 0.99493 0.97843 0.97021 1.21735 0.94593 0.96544 0.95145 0.88246 1.22462 0.96947 0.95741 0.95054 0.89856 1.22722 0.96762 0.97490 0.98233 1.21834 0.93318 0.98772 0.87262 1.48581 1.29419 1.50359 1.10889 1.18396 0.78268 0.78305 0.89197 1.90527 1.62426 1.68677 1.30902 1.21385 1.19803 1.25006 0.94297 0.89733 1.27014 0.95943 0.95477 1.00122 1.70168 1.22996 1.26898 1.25345 0.85010 0.77351 0.78786 0.77170 1.18308 1.19594 1.17234 1.22786 0.95498 0.92656 0.91265 0.92267 0.92641 0.94139 0.91336 0.92611 0.92319 0.93961 0.90546 0.92144 0.89686 0.90194 0.92911 0.87841 0.89753 0.93248 0.93529 0.91464 0.93292 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.34 7.11 71.98 0.51 -3.83 16 2 C -0.06 -1.35 0.87 -51.46 -0.04 -1.40 16 3 C -0.13 -2.14 8.05 71.98 0.58 -1.56 16 4 C -0.12 -2.62 5.90 31.67 0.19 -2.44 16 5 C -0.12 -2.30 6.91 31.88 0.22 -2.08 16 6 C -0.13 -2.97 5.11 31.67 0.16 -2.81 16 7 C -0.06 -1.34 2.50 -10.07 -0.03 -1.36 16 8 H 0.10 1.71 7.67 -2.39 -0.02 1.69 16 9 C -0.08 -2.36 2.19 -9.33 -0.02 -2.38 16 10 H 0.08 2.41 6.13 -2.39 -0.01 2.39 16 11 C -0.11 -3.01 6.33 31.78 0.20 -2.81 16 12 C 0.11 4.20 6.07 86.73 0.53 4.73 16 13 N -0.66 -32.14 3.33 -816.41 -2.71 -34.86 16 14 C 0.55 34.28 7.75 86.36 0.67 34.95 16 15 O -0.64 -45.37 15.37 -4.30 -0.07 -45.43 16 16 C -0.57 -33.88 9.04 24.83 0.22 -33.66 16 17 H 0.08 4.58 7.17 -2.91 -0.02 4.55 16 18 C 0.03 1.69 5.48 85.30 0.47 2.16 16 19 N -0.82 -52.23 11.91 21.84 0.26 -51.97 16 20 Si 1.00 42.22 29.56 68.60 2.03 44.25 16 21 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 24 C 0.10 4.08 5.26 86.93 0.46 4.54 16 25 H 0.06 1.70 5.30 -2.39 -0.01 1.68 16 26 H 0.05 1.37 7.96 -2.39 -0.02 1.35 16 27 H 0.04 1.38 4.99 -2.38 -0.01 1.36 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.89 8.12 -2.38 -0.02 0.87 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.04 1.15 7.51 -2.39 -0.02 1.13 16 32 H 0.08 1.43 7.84 -2.39 -0.02 1.41 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 1.48 8.12 -2.38 -0.02 1.46 16 36 H 0.05 1.53 5.01 -2.39 -0.01 1.52 16 37 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.08 2.00 7.13 -2.39 -0.02 1.98 16 39 H 0.05 1.85 8.12 -2.39 -0.02 1.83 16 40 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.28 15.72 8.29 -92.71 -0.77 14.95 16 42 H 0.05 2.04 5.17 -2.39 -0.01 2.03 16 43 H 0.05 2.32 4.87 -2.39 -0.01 2.31 16 Total: -1.00 -78.99 318.33 4.61 -74.37 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.99 Total: 21.58 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 4.12 Total: -7.95 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -2.45 Total: -86.83 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -0.07 Total: -45.43 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -78.99 4.61 -74.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592870030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.485 kcal (2) G-P(sol) polarization free energy of solvation -78.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds