Wall clock time and date at job start Mon Mar 30 2020 07:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.46955 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99945 * 179.97438 * 12 11 10 14 14 O 1.21274 * 119.99823 * 0.02562 * 13 12 11 15 15 C 1.50696 * 119.99830 * 180.02562 * 13 12 11 16 16 H 1.08997 * 115.55090 * 34.27806 * 15 13 12 17 17 C 1.53004 * 117.49963 * 248.60954 * 15 13 12 18 18 C 1.52996 * 117.49862 * 179.97438 * 15 13 12 19 19 H 1.09003 * 117.49807 * 0.02562 * 18 15 13 20 20 C 1.52996 * 117.50287 * 214.97850 * 18 15 13 21 21 C 1.54261 * 110.03637 * 177.90767 * 20 18 15 22 22 C 1.54965 * 104.16408 * 217.13510 * 21 20 18 23 23 C 1.54888 * 102.77371 * 37.88725 * 22 21 20 24 24 C 1.53876 * 110.03043 * 60.68888 * 20 18 15 25 25 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 27 27 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 28 28 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 29 29 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 30 30 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 31 31 H 1.09002 * 109.47087 * 60.00464 * 11 10 9 32 32 H 0.96998 * 119.99895 * 0.02562 * 12 11 10 33 33 H 1.09002 * 117.49264 * 0.02562 * 17 15 13 34 34 H 1.08997 * 117.49835 * 144.99539 * 17 15 13 35 35 H 1.09001 * 110.01692 * 299.29864 * 20 18 15 36 36 H 1.08998 * 110.48718 * 335.78841 * 21 20 18 37 37 H 1.09005 * 110.48570 * 98.42722 * 21 20 18 38 38 H 1.08995 * 110.72281 * 279.57711 * 22 21 20 39 39 H 1.09001 * 110.76618 * 156.22380 * 22 21 20 40 40 H 1.09005 * 110.48771 * 203.40390 * 23 22 21 41 41 H 1.09008 * 110.48934 * 80.76259 * 23 22 21 42 42 H 1.09007 * 110.03448 * 238.57063 * 24 20 18 43 43 H 1.08992 * 110.03327 * 0.02562 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4803 -4.9870 0.0012 12 7 2.4324 -6.1006 0.0006 13 6 1.9831 -7.3713 0.0015 14 8 0.7908 -7.5929 0.0024 15 6 2.9624 -8.5167 0.0014 16 1 3.8859 -8.3456 0.5546 17 6 3.0445 -9.3759 -1.2619 18 6 2.3900 -9.9355 0.0031 19 1 1.3051 -10.0405 0.0039 20 6 3.1576 -11.0061 0.7812 21 6 2.4055 -12.3512 0.7117 22 6 2.6148 -12.9755 2.1145 23 6 2.5286 -11.7462 3.0528 24 6 3.2363 -10.6216 2.2691 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5566 0.8903 27 1 0.6247 -2.5571 -0.8897 28 1 2.8720 -3.6043 -0.8894 29 1 2.8720 -3.6043 0.8906 30 1 0.8540 -5.0446 0.8914 31 1 0.8534 -5.0451 -0.8886 32 1 3.3860 -5.9233 0.0002 33 1 2.3904 -9.1124 -2.0930 34 1 4.0220 -9.7702 -1.5397 35 1 4.1613 -11.1179 0.3709 36 1 1.3450 -12.1859 0.5222 37 1 2.8367 -12.9900 -0.0592 38 1 3.5950 -13.4469 2.1845 39 1 1.8240 -13.6907 2.3411 40 1 3.0492 -11.9442 3.9898 41 1 1.4879 -11.4828 3.2419 42 1 4.2781 -10.5476 2.5811 43 1 2.7273 -9.6726 2.4369 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593051370.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:53 Heat of formation + Delta-G solvation = -78.583884 kcal Electronic energy + Delta-G solvation = -19368.040806 eV Core-core repulsion = 16411.074047 eV Total energy + Delta-G solvation = -2956.966760 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.22776 -39.44574 -37.32198 -36.49574 -35.47317 -32.96460 -29.79836 -29.49558 -28.45005 -25.76662 -24.13959 -22.95629 -22.58592 -21.64661 -21.04925 -20.21722 -18.95615 -18.31683 -17.06161 -16.82448 -16.57148 -16.23658 -15.64293 -15.51177 -15.35253 -14.99024 -14.73184 -14.19774 -13.72316 -13.66597 -13.53011 -13.15446 -12.71054 -12.61710 -12.59009 -12.23841 -12.08159 -11.95838 -11.88189 -11.87427 -11.83353 -11.51695 -11.32188 -11.18802 -11.03290 -10.85410 -10.65377 -10.56241 -10.20332 -8.70829 -6.42154 1.42127 1.53035 1.61931 1.80909 2.08004 2.57426 2.80977 3.14542 3.53408 3.65079 3.73994 3.82907 3.96660 4.01722 4.04653 4.08895 4.22601 4.36804 4.52214 4.61014 4.61450 4.73380 4.73575 4.78716 4.84043 4.86302 4.87401 4.92162 4.99133 5.04475 5.09350 5.22996 5.28851 5.32327 5.37403 5.39123 5.43384 5.49411 5.56349 5.95125 6.15978 6.50188 6.54177 7.18004 7.41197 8.69937 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.045565 B = 0.002600 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.364751 B =10768.483567 C =10858.142995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.044 4.044 3 Si 1.121 2.879 4 H -0.286 1.286 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.618 4.618 8 H 0.058 0.942 9 C 0.007 3.993 10 C -0.094 4.094 11 C 0.129 3.871 12 N -0.712 5.712 13 C 0.531 3.469 14 O -0.594 6.594 15 C -0.191 4.191 16 H 0.150 0.850 17 C -0.133 4.133 18 C -0.111 4.111 19 H 0.088 0.912 20 C -0.056 4.056 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.130 4.130 24 C -0.123 4.123 25 H 0.254 0.746 26 H -0.012 1.012 27 H -0.012 1.012 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.417 0.583 33 H 0.085 0.915 34 H 0.137 0.863 35 H 0.094 0.906 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.051 0.949 42 H 0.077 0.923 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.678 -26.056 1.697 29.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.241 4.241 3 Si 0.941 3.059 4 H -0.212 1.212 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.656 4.656 8 H 0.077 0.923 9 C -0.031 4.031 10 C -0.132 4.132 11 C 0.005 3.995 12 N -0.363 5.363 13 C 0.320 3.680 14 O -0.475 6.475 15 C -0.212 4.212 16 H 0.168 0.832 17 C -0.170 4.170 18 C -0.130 4.130 19 H 0.106 0.894 20 C -0.074 4.074 21 C -0.156 4.156 22 C -0.160 4.160 23 C -0.167 4.167 24 C -0.160 4.160 25 H 0.063 0.937 26 H 0.007 0.993 27 H 0.007 0.993 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.254 0.746 33 H 0.104 0.896 34 H 0.155 0.845 35 H 0.113 0.887 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.652 -24.562 1.699 27.239 hybrid contribution -0.336 -1.144 0.050 1.194 sum 11.315 -25.707 1.749 28.141 Atomic orbital electron populations 1.70923 1.08144 1.29829 1.48818 1.27559 0.96590 1.07219 0.92695 0.82900 0.74065 0.70716 0.78203 1.21180 1.19125 1.19119 1.22479 0.94970 0.93049 1.55075 0.92328 1.19127 0.95151 0.94506 0.94284 1.21470 0.98151 0.91366 1.02236 1.21216 0.92079 0.85752 1.00451 1.45920 1.11141 1.04919 1.74312 1.20468 0.88835 0.84228 0.74481 1.90666 1.19199 1.85485 1.52156 1.22285 1.01266 0.90195 1.07405 0.83216 1.23216 1.03948 0.99716 0.90149 1.22510 0.99255 0.91210 1.00042 0.89405 1.21422 0.98960 0.92653 0.94379 1.22452 0.99962 0.95363 0.97873 1.22518 1.02284 0.96949 0.94218 1.22391 1.00086 0.95452 0.98795 1.22236 1.01140 0.98291 0.94354 0.93666 0.99347 0.99337 0.91285 0.91322 0.93442 0.93416 0.74636 0.89633 0.84535 0.88734 0.92646 0.90266 0.90323 0.91405 0.90977 0.93059 0.90450 0.93337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.54 13.65 21.45 0.29 -59.25 16 2 C -0.04 -2.56 5.46 84.65 0.46 -2.10 16 3 Si 1.12 50.02 29.90 68.60 2.05 52.08 16 4 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 5 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 6 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.62 -35.21 9.11 25.60 0.23 -34.98 16 8 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 9 C 0.01 0.37 4.28 29.85 0.13 0.49 16 10 C -0.09 -3.72 5.27 30.59 0.16 -3.56 16 11 C 0.13 4.71 5.67 86.38 0.49 5.20 16 12 N -0.71 -20.30 5.56 -463.06 -2.57 -22.87 16 13 C 0.53 15.90 7.61 87.66 0.67 16.57 16 14 O -0.59 -23.50 16.26 -3.01 -0.05 -23.55 16 15 C -0.19 -3.75 5.29 -11.54 -0.06 -3.81 16 16 H 0.15 2.11 8.14 -2.39 -0.02 2.09 16 17 C -0.13 -2.14 9.89 30.60 0.30 -1.83 16 18 C -0.11 -2.10 4.50 -10.79 -0.05 -2.15 16 19 H 0.09 2.21 7.34 -2.39 -0.02 2.19 16 20 C -0.06 -0.76 3.10 -10.07 -0.03 -0.79 16 21 C -0.12 -1.55 6.37 31.69 0.20 -1.35 16 22 C -0.12 -1.44 6.91 31.91 0.22 -1.22 16 23 C -0.13 -1.85 6.83 31.67 0.22 -1.63 16 24 C -0.12 -1.82 6.25 31.32 0.20 -1.63 16 25 H 0.25 16.38 7.22 -92.71 -0.67 15.71 16 26 H -0.01 -0.66 8.01 -2.39 -0.02 -0.68 16 27 H -0.01 -0.66 8.01 -2.38 -0.02 -0.68 16 28 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 29 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.42 8.96 8.47 -92.71 -0.79 8.17 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.14 1.32 8.06 -2.39 -0.02 1.30 16 35 H 0.09 0.95 7.93 -2.39 -0.02 0.93 16 36 H 0.05 0.88 7.64 -2.39 -0.02 0.86 16 37 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.07 0.88 8.14 -2.38 -0.02 0.87 16 41 H 0.05 0.86 8.14 -2.38 -0.02 0.85 16 42 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 43 H 0.05 0.93 7.35 -2.39 -0.02 0.91 16 Total: -1.00 -72.85 348.70 3.14 -69.71 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.28 Total: 16.68 kcal Atomic # 6 Polarization: -35.92 SS G_CDS: 3.14 Total: -32.79 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -2.28 Total: -82.12 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.05 Total: -23.55 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 2.05 Total: 52.08 kcal Total: -72.85 3.14 -69.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593051370.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.876 kcal (2) G-P(sol) polarization free energy of solvation -72.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds