Wall clock time and date at job start Mon Mar 30 2020 06:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48496 * 109.47112 * 240.00369 * 3 2 1 5 5 H 1.48500 * 109.47454 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00197 * 3 2 1 7 7 C 1.37874 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99350 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99985 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00161 * 180.02562 * 13 12 11 16 16 C 1.47199 * 136.14587 * 359.97438 * 15 13 12 17 17 C 1.53601 * 88.13112 * 206.51855 * 16 15 13 18 18 C 1.46376 * 136.15366 * 179.63101 * 15 13 12 19 19 C 1.53695 * 115.01201 * 36.29240 * 18 15 13 20 20 C 1.55031 * 104.03059 * 207.16269 * 19 18 15 21 21 C 1.54941 * 102.83350 * 37.42397 * 20 19 18 22 22 C 1.53308 * 115.25395 * 270.72800 * 18 15 13 23 23 H 0.96998 * 120.00187 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.46894 * 60.00012 * 9 7 2 25 25 H 1.09001 * 109.46436 * 299.99731 * 9 7 2 26 26 H 1.09001 * 109.46741 * 59.99975 * 10 9 7 27 27 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 28 28 H 1.09001 * 109.46652 * 60.00345 * 11 10 9 29 29 H 1.08992 * 109.47514 * 300.00434 * 11 10 9 30 30 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 31 31 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 32 32 H 1.08994 * 113.44655 * 321.33682 * 16 15 13 33 33 H 1.09002 * 113.44244 * 91.64598 * 16 15 13 34 34 H 1.09003 * 114.23933 * 88.02508 * 17 16 15 35 35 H 1.08998 * 114.23987 * 220.74749 * 17 16 15 36 36 H 1.09007 * 110.51924 * 325.79841 * 19 18 15 37 37 H 1.08999 * 110.51991 * 88.52396 * 19 18 15 38 38 H 1.09000 * 110.73699 * 279.09225 * 20 19 18 39 39 H 1.08997 * 110.89880 * 155.83342 * 20 19 18 40 40 H 1.09001 * 110.47921 * 203.69134 * 21 20 19 41 41 H 1.08997 * 110.59147 * 81.12096 * 21 20 19 42 42 H 1.09002 * 110.07967 * 248.52843 * 22 18 15 43 43 H 1.08996 * 110.07705 * 10.03388 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 6 1.7211 -7.4551 -0.0018 14 8 0.5084 -7.4551 -0.0009 15 7 2.3950 -8.6223 -0.0018 16 6 3.8089 -9.0317 -0.0023 17 6 3.3785 -10.3374 -0.6873 18 6 2.0447 -10.0435 0.0047 19 6 0.7946 -10.4084 -0.8116 20 6 0.2518 -11.6841 -0.1177 21 6 0.5181 -11.3999 1.3820 22 6 1.8788 -10.6699 1.3941 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8902 25 1 0.6248 -2.5570 0.8898 26 1 2.8726 -3.6046 0.8877 27 1 2.8713 -3.6039 -0.8923 28 1 0.8528 -5.0446 -0.8905 29 1 0.8546 -5.0450 0.8894 30 1 3.1007 -6.0922 -0.8922 31 1 3.1019 -6.0922 0.8878 32 1 4.4424 -8.4024 -0.6274 33 1 4.2179 -9.1796 0.9972 34 1 3.3435 -10.2815 -1.7753 35 1 3.8896 -11.2263 -0.3174 36 1 0.0592 -9.6052 -0.7638 37 1 1.0627 -10.6211 -1.8465 38 1 0.8013 -12.5660 -0.4469 39 1 -0.8153 -11.8041 -0.3043 40 1 0.5809 -12.3332 1.9416 41 1 -0.2617 -10.7602 1.7952 42 1 2.6833 -11.3808 1.5826 43 1 1.8804 -9.8922 2.1578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593760761.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:32 Heat of formation + Delta-G solvation = -35.030110 kcal Electronic energy + Delta-G solvation = -19963.236618 eV Core-core repulsion = 17008.158492 eV Total energy + Delta-G solvation = -2955.078126 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.18404 -38.35300 -35.79045 -34.82858 -32.58207 -30.51676 -29.16502 -28.99606 -27.23136 -25.50404 -23.00338 -22.48094 -20.98774 -20.75668 -19.91634 -17.97259 -16.68995 -16.42118 -16.11680 -15.79580 -15.33908 -15.05100 -14.42563 -13.97871 -13.89586 -13.43880 -13.35163 -12.79731 -12.53723 -12.18700 -12.10229 -11.83231 -11.63751 -11.55791 -11.44773 -11.39531 -11.25123 -10.94613 -10.80000 -10.53783 -10.49173 -10.47249 -10.35705 -9.59538 -9.58060 -9.17384 -8.95951 -8.75356 -8.28102 -5.92956 -3.95572 2.67492 2.83417 3.36712 3.40919 3.43255 3.95939 4.26206 4.43778 4.49738 4.53565 4.63835 4.85502 4.95636 5.13135 5.18379 5.22815 5.29999 5.34830 5.39572 5.41196 5.42924 5.43465 5.53284 5.65216 5.69650 5.76688 5.82959 5.92418 6.04002 6.09029 6.17706 6.24285 6.36657 6.58138 6.87312 7.04964 7.23120 7.73344 7.76399 7.92935 8.08591 8.29810 8.50291 9.11945 9.67845 11.18394 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.043789 B = 0.002984 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.274218 B = 9382.297619 C = 9731.507269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.132 4.132 13 C 0.541 3.459 14 O -0.532 6.532 15 N -0.644 5.644 16 C 0.099 3.901 17 C -0.144 4.144 18 C 0.155 3.845 19 C -0.130 4.130 20 C -0.121 4.121 21 C -0.122 4.122 22 C -0.121 4.121 23 H 0.260 0.740 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.816 -26.448 0.263 27.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.141 4.141 12 C -0.171 4.171 13 C 0.333 3.667 14 O -0.407 6.407 15 N -0.381 5.381 16 C -0.025 4.025 17 C -0.182 4.182 18 C 0.070 3.930 19 C -0.168 4.168 20 C -0.159 4.159 21 C -0.160 4.160 22 C -0.160 4.160 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.872 -26.064 0.263 26.956 hybrid contribution 0.557 1.023 0.105 1.169 sum 7.429 -25.041 0.368 26.122 Atomic orbital electron populations 1.69968 1.06048 1.26609 1.50879 1.25043 0.94843 0.99211 0.95467 0.86667 0.79570 0.83255 0.78538 1.20286 1.21311 1.20295 1.21255 0.92944 0.91229 1.50493 0.92816 1.19089 0.94049 0.91232 0.97306 1.21647 0.99071 0.93986 1.00027 1.21460 0.97022 0.92685 1.02926 1.21746 1.00006 0.91629 1.03753 1.20710 0.87694 0.83687 0.74631 1.90684 1.13957 1.86766 1.49317 1.49849 1.08849 1.04826 1.74559 1.22942 0.84387 0.94402 1.00721 1.23506 0.95848 0.97916 1.00923 1.22134 0.95373 0.80210 0.95302 1.22577 0.97284 0.98632 0.98347 1.22457 1.01024 0.97355 0.95081 1.22351 0.96895 0.99949 0.96816 1.22273 0.98261 0.99704 0.95740 0.92991 0.96591 0.96597 0.93526 0.93496 0.91798 0.91853 0.89378 0.89408 0.90193 0.89875 0.88653 0.89341 0.89219 0.91316 0.91480 0.91376 0.91510 0.91380 0.90679 0.91041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.29 55.43 0.74 -27.18 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -15.28 9.11 -34.44 -0.31 -15.59 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.34 5.15 -26.73 -0.14 -2.48 16 11 C -0.10 -1.94 4.50 -26.73 -0.12 -2.06 16 12 C -0.13 -1.93 5.53 -27.88 -0.15 -2.08 16 13 C 0.54 8.41 8.00 -10.98 -0.09 8.32 16 14 O -0.53 -10.33 15.17 5.56 0.08 -10.24 16 15 N -0.64 -7.62 3.43 -172.22 -0.59 -8.21 16 16 C 0.10 0.76 8.16 -9.54 -0.08 0.68 16 17 C -0.14 -0.96 7.65 -26.36 -0.20 -1.17 16 18 C 0.15 1.50 1.36 -137.50 -0.19 1.32 16 19 C -0.13 -1.37 6.31 -25.30 -0.16 -1.53 16 20 C -0.12 -1.01 6.91 -24.63 -0.17 -1.18 16 21 C -0.12 -1.04 6.84 -24.96 -0.17 -1.21 16 22 C -0.12 -1.05 6.10 -25.82 -0.16 -1.20 16 23 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 29 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 34 H 0.09 0.63 8.00 -51.93 -0.42 0.21 16 35 H 0.09 0.40 7.88 -51.93 -0.41 -0.01 16 36 H 0.09 1.27 6.54 -51.92 -0.34 0.93 16 37 H 0.07 0.65 7.85 -51.93 -0.41 0.24 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.48 7.74 -51.93 -0.40 0.08 16 43 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -34.09 344.83 -9.62 -43.71 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -7.85 Total: -4.19 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -2.18 Total: -16.24 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.15 Total: -35.38 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.09 -9.62 -43.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593760761.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.682 kcal (2) G-P(sol) polarization free energy of solvation -34.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds