Wall clock time and date at job start Mon Mar 30 2020 06:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48496 * 109.47112 * 240.00369 * 3 2 1 5 5 H 1.48500 * 109.47454 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00197 * 3 2 1 7 7 C 1.37874 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99350 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46912 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99985 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00161 * 180.02562 * 13 12 11 16 16 C 1.47199 * 136.14587 * 359.97438 * 15 13 12 17 17 C 1.53601 * 88.13112 * 206.51855 * 16 15 13 18 18 C 1.46376 * 136.15366 * 179.63101 * 15 13 12 19 19 C 1.53695 * 115.01201 * 36.29240 * 18 15 13 20 20 C 1.55031 * 104.03059 * 207.16269 * 19 18 15 21 21 C 1.54941 * 102.83350 * 37.42397 * 20 19 18 22 22 C 1.53308 * 115.25395 * 270.72800 * 18 15 13 23 23 H 0.96998 * 120.00187 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.46894 * 60.00012 * 9 7 2 25 25 H 1.09001 * 109.46436 * 299.99731 * 9 7 2 26 26 H 1.09001 * 109.46741 * 59.99975 * 10 9 7 27 27 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 28 28 H 1.09001 * 109.46652 * 60.00345 * 11 10 9 29 29 H 1.08992 * 109.47514 * 300.00434 * 11 10 9 30 30 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 31 31 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 32 32 H 1.08994 * 113.44655 * 321.33682 * 16 15 13 33 33 H 1.09002 * 113.44244 * 91.64598 * 16 15 13 34 34 H 1.09003 * 114.23933 * 88.02508 * 17 16 15 35 35 H 1.08998 * 114.23987 * 220.74749 * 17 16 15 36 36 H 1.09007 * 110.51924 * 325.79841 * 19 18 15 37 37 H 1.08999 * 110.51991 * 88.52396 * 19 18 15 38 38 H 1.09000 * 110.73699 * 279.09225 * 20 19 18 39 39 H 1.08997 * 110.89880 * 155.83342 * 20 19 18 40 40 H 1.09001 * 110.47921 * 203.69134 * 21 20 19 41 41 H 1.08997 * 110.59147 * 81.12096 * 21 20 19 42 42 H 1.09002 * 110.07967 * 248.52843 * 22 18 15 43 43 H 1.08996 * 110.07705 * 10.03388 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 6 1.7211 -7.4551 -0.0018 14 8 0.5084 -7.4551 -0.0009 15 7 2.3950 -8.6223 -0.0018 16 6 3.8089 -9.0317 -0.0023 17 6 3.3785 -10.3374 -0.6873 18 6 2.0447 -10.0435 0.0047 19 6 0.7946 -10.4084 -0.8116 20 6 0.2518 -11.6841 -0.1177 21 6 0.5181 -11.3999 1.3820 22 6 1.8788 -10.6699 1.3941 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8902 25 1 0.6248 -2.5570 0.8898 26 1 2.8726 -3.6046 0.8877 27 1 2.8713 -3.6039 -0.8923 28 1 0.8528 -5.0446 -0.8905 29 1 0.8546 -5.0450 0.8894 30 1 3.1007 -6.0922 -0.8922 31 1 3.1019 -6.0922 0.8878 32 1 4.4424 -8.4024 -0.6274 33 1 4.2179 -9.1796 0.9972 34 1 3.3435 -10.2815 -1.7753 35 1 3.8896 -11.2263 -0.3174 36 1 0.0592 -9.6052 -0.7638 37 1 1.0627 -10.6211 -1.8465 38 1 0.8013 -12.5660 -0.4469 39 1 -0.8153 -11.8041 -0.3043 40 1 0.5809 -12.3332 1.9416 41 1 -0.2617 -10.7602 1.7952 42 1 2.6833 -11.3808 1.5826 43 1 1.8804 -9.8922 2.1578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593760761.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:32 Heat of formation + Delta-G solvation = -55.411280 kcal Electronic energy + Delta-G solvation = -19964.120412 eV Core-core repulsion = 17008.158492 eV Total energy + Delta-G solvation = -2955.961920 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.99253 -39.50554 -36.63723 -36.53712 -34.61749 -31.93806 -30.45941 -29.79284 -27.95998 -27.28089 -24.41774 -23.41625 -22.13255 -21.66846 -21.48750 -18.93855 -18.43203 -17.62121 -17.27272 -16.95040 -16.52745 -16.20823 -15.94400 -15.25707 -14.81296 -14.56846 -14.34230 -14.26000 -13.74482 -13.62956 -13.44413 -13.22237 -12.81113 -12.70500 -12.54076 -12.37716 -12.25267 -12.19258 -12.16861 -12.08290 -11.93388 -11.49801 -11.42740 -11.37095 -11.19984 -11.12209 -10.56914 -10.56219 -9.66240 -8.20003 -6.32875 1.39164 1.43704 1.51591 1.59964 1.87832 2.40977 3.12396 3.30183 3.56422 3.63310 3.75258 3.91362 3.98620 4.07349 4.24706 4.32975 4.41992 4.48844 4.55214 4.60818 4.62600 4.68079 4.70984 4.77255 4.79529 4.85087 4.97373 4.99922 5.02849 5.13167 5.14121 5.16198 5.28654 5.32134 5.38819 5.40196 5.44212 5.53138 5.74207 5.85071 6.22970 6.78656 6.85112 7.18596 7.36844 8.92267 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.043789 B = 0.002984 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.274218 B = 9382.297619 C = 9731.507269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.094 4.094 12 C -0.120 4.120 13 C 0.532 3.468 14 O -0.589 6.589 15 N -0.649 5.649 16 C 0.094 3.906 17 C -0.123 4.123 18 C 0.140 3.860 19 C -0.136 4.136 20 C -0.115 4.115 21 C -0.125 4.125 22 C -0.117 4.117 23 H 0.263 0.737 24 H -0.016 1.016 25 H -0.016 1.016 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.124 0.876 36 H 0.042 0.958 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.038 0.962 42 H 0.110 0.890 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.626 -28.022 0.270 30.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.085 0.915 9 C -0.017 4.017 10 C -0.131 4.131 11 C -0.132 4.132 12 C -0.159 4.159 13 C 0.324 3.676 14 O -0.470 6.470 15 N -0.384 5.384 16 C -0.027 4.027 17 C -0.161 4.161 18 C 0.055 3.945 19 C -0.174 4.174 20 C -0.153 4.153 21 C -0.163 4.163 22 C -0.156 4.156 23 H 0.072 0.928 24 H 0.002 0.998 25 H 0.002 0.998 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.142 0.858 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.057 0.943 42 H 0.128 0.872 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.743 -27.690 0.271 29.702 hybrid contribution -0.682 1.441 0.096 1.597 sum 10.061 -26.248 0.366 28.113 Atomic orbital electron populations 1.70134 1.08141 1.27888 1.51743 1.26124 0.95801 1.03840 0.94669 0.85405 0.78155 0.77505 0.79399 1.18817 1.20995 1.18843 1.21725 0.93770 0.92174 1.50523 0.91498 1.19042 0.94642 0.93806 0.94252 1.21438 0.97815 0.92583 1.01308 1.21236 0.97426 0.93719 1.00839 1.21586 0.98830 0.89468 1.06022 1.20792 0.87095 0.85145 0.74561 1.90664 1.16323 1.87736 1.52291 1.49986 1.11306 1.04729 1.72355 1.23312 0.82083 0.94853 1.02444 1.23483 0.93011 0.98728 1.00864 1.22559 0.96603 0.79031 0.96306 1.22569 0.97030 0.98287 0.99536 1.22457 1.01026 0.97163 0.94608 1.22378 0.96260 1.00504 0.97142 1.22291 0.99265 0.99707 0.94298 0.92800 0.99775 0.99802 0.92081 0.92016 0.93994 0.94098 0.86927 0.87024 0.88740 0.87796 0.88410 0.85820 0.93938 0.90497 0.88647 0.92038 0.89087 0.94295 0.87156 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.17 13.29 21.45 0.28 -59.88 16 2 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 3 Si 0.97 45.41 29.54 68.60 2.03 47.44 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.54 -32.26 9.11 25.60 0.23 -32.03 16 8 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 9 C 0.02 1.12 4.97 29.85 0.15 1.27 16 10 C -0.09 -4.03 5.15 30.59 0.16 -3.88 16 11 C -0.09 -3.69 4.50 30.59 0.14 -3.55 16 12 C -0.12 -3.41 5.53 29.85 0.17 -3.24 16 13 C 0.53 16.85 8.00 87.66 0.70 17.55 16 14 O -0.59 -24.67 15.17 -3.02 -0.05 -24.72 16 15 N -0.65 -14.58 3.43 -817.18 -2.80 -17.39 16 16 C 0.09 1.10 8.16 82.43 0.67 1.77 16 17 C -0.12 -1.14 7.65 30.83 0.24 -0.90 16 18 C 0.14 2.46 1.36 -0.01 0.00 2.46 16 19 C -0.14 -2.88 6.31 31.52 0.20 -2.68 16 20 C -0.11 -1.79 6.91 31.95 0.22 -1.57 16 21 C -0.13 -2.02 6.84 31.74 0.22 -1.80 16 22 C -0.12 -1.78 6.10 31.18 0.19 -1.59 16 23 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 24 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 25 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 26 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.04 1.79 8.10 -2.39 -0.02 1.77 16 29 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 30 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.10 0.85 8.10 -2.39 -0.02 0.83 16 34 H 0.10 0.91 8.00 -2.39 -0.02 0.89 16 35 H 0.12 0.37 7.88 -2.39 -0.02 0.35 16 36 H 0.04 1.31 6.54 -2.38 -0.02 1.30 16 37 H 0.08 1.42 7.85 -2.39 -0.02 1.40 16 38 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.11 0.90 7.74 -2.39 -0.02 0.88 16 43 H 0.05 0.99 8.09 -2.39 -0.02 0.97 16 Total: -1.00 -79.61 344.83 4.15 -75.46 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 0.95 Total: 7.26 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: 3.74 Total: -28.16 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -2.52 Total: -77.27 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.05 Total: -24.72 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -79.61 4.15 -75.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593760761.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.045 kcal (2) G-P(sol) polarization free energy of solvation -79.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds