Wall clock time and date at job start Mon Mar 30 2020 07:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47381 * 269.99981 * 3 2 1 5 5 H 1.48495 * 109.47362 * 29.99733 * 3 2 1 6 6 H 1.48498 * 109.47232 * 150.00025 * 3 2 1 7 7 C 1.37878 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99783 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99788 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46857 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46791 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.46586 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00583 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99740 * 180.02562 * 12 11 10 15 15 C 1.46501 * 119.99865 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.46881 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.47135 * 179.97438 * 16 15 14 18 18 C 1.29445 * 117.95895 * 94.73163 * 17 16 15 19 19 C 1.50074 * 124.07477 * 180.75080 * 18 17 16 20 20 C 1.53016 * 110.14671 * 342.87319 * 19 18 17 21 21 C 1.53391 * 108.44058 * 49.43435 * 20 19 18 22 22 C 1.50066 * 117.96583 * 275.00149 * 17 16 15 23 23 H 0.97001 * 120.00293 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47268 * 60.00540 * 9 7 2 25 25 H 1.08997 * 109.47081 * 299.99983 * 9 7 2 26 26 H 1.09004 * 109.47033 * 60.00417 * 10 9 7 27 27 H 1.08997 * 109.47346 * 299.99924 * 10 9 7 28 28 H 1.08998 * 109.47176 * 60.00739 * 11 10 9 29 29 H 1.08997 * 109.47238 * 300.00143 * 11 10 9 30 30 H 0.96999 * 119.99835 * 359.97438 * 14 12 11 31 31 H 1.08992 * 109.47403 * 59.99682 * 15 14 12 32 32 H 1.09006 * 109.47120 * 299.99358 * 15 14 12 33 33 H 1.08999 * 109.47122 * 59.99342 * 16 15 14 34 34 H 1.08997 * 109.46865 * 299.99588 * 16 15 14 35 35 H 1.07999 * 117.96176 * 0.73020 * 18 17 16 36 36 H 1.09002 * 109.35609 * 222.66402 * 19 18 17 37 37 H 1.09003 * 109.35439 * 103.08085 * 19 18 17 38 38 H 1.09003 * 109.64533 * 289.75036 * 20 19 18 39 39 H 1.09000 * 109.64519 * 169.11862 * 20 19 18 40 40 H 1.09001 * 109.64689 * 172.88318 * 21 20 19 41 41 H 1.09003 * 109.64136 * 52.25083 * 21 20 19 42 42 H 1.09003 * 109.35468 * 282.79297 * 22 17 16 43 43 H 1.08998 * 109.35916 * 42.51411 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4596 -6.1324 0.0005 13 8 3.6520 -5.9109 0.0001 14 7 2.0104 -7.4032 0.0004 15 6 2.9625 -8.5167 0.0004 16 6 2.1975 -9.8417 -0.0004 17 6 3.1768 -10.9871 -0.0011 18 6 3.4995 -11.5104 1.1381 19 6 4.4714 -12.6426 1.2981 20 6 4.6838 -13.3484 -0.0428 21 6 4.9830 -12.2861 -1.1082 22 6 3.7219 -11.4462 -1.3217 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6240 -2.5566 0.8903 26 1 2.8719 -3.6043 0.8906 27 1 2.8720 -3.6043 -0.8894 28 1 0.8534 -5.0451 -0.8886 29 1 0.8539 -5.0445 0.8913 30 1 1.0567 -7.5804 0.0011 31 1 3.5891 -8.4590 0.8903 32 1 3.5891 -8.4589 -0.8897 33 1 1.5711 -9.8991 -0.8906 34 1 1.5706 -9.8998 0.8894 35 1 3.0410 -11.1068 2.0288 36 1 4.0793 -13.3555 2.0236 37 1 5.4243 -12.2529 1.6563 38 1 3.7820 -13.8967 -0.3153 39 1 5.5254 -14.0367 0.0346 40 1 5.2616 -12.7728 -2.0429 41 1 5.7968 -11.6454 -0.7683 42 1 2.9701 -12.0469 -1.8337 43 1 3.9678 -10.5776 -1.9327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593941449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:37 Heat of formation + Delta-G solvation = -70.865288 kcal Electronic energy + Delta-G solvation = -19057.485266 eV Core-core repulsion = 16100.853210 eV Total energy + Delta-G solvation = -2956.632056 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.60952 -38.93007 -35.48029 -34.12373 -32.86307 -31.95595 -31.08964 -28.96247 -27.40381 -24.35594 -23.58001 -22.93460 -21.52676 -20.60989 -19.69496 -17.86395 -16.82150 -16.29333 -15.90810 -15.71619 -15.41802 -14.74419 -14.68103 -14.39765 -14.10144 -13.60827 -13.44097 -12.99837 -12.84676 -12.69900 -12.39762 -12.23984 -12.04232 -11.75184 -11.53757 -11.25127 -11.13485 -10.78771 -10.76921 -10.58542 -10.52146 -10.51213 -9.65538 -9.64398 -9.25361 -9.08401 -8.97701 -8.94499 -8.29764 -5.95459 -3.96660 1.90549 2.97943 3.35991 3.36501 3.42131 3.47361 4.32245 4.38143 4.51412 4.56774 4.77555 4.81942 4.93963 5.04552 5.05980 5.21121 5.23893 5.28754 5.37200 5.40538 5.50406 5.56096 5.61048 5.69587 5.72067 5.75156 5.78605 5.87224 5.89929 5.98114 6.30104 6.34396 6.53047 6.71268 6.76569 6.97050 7.19797 7.64663 7.74006 7.86819 8.05499 8.49174 8.51315 9.10468 9.67095 11.16049 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.056635 B = 0.002374 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.278547 B =11791.868991 C =11940.995805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.138 4.138 12 C 0.511 3.489 13 O -0.539 6.539 14 N -0.742 5.742 15 C 0.125 3.875 16 C -0.099 4.099 17 C -0.117 4.117 18 C -0.153 4.153 19 C -0.090 4.090 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.085 4.085 23 H 0.259 0.741 24 H 0.015 0.985 25 H 0.016 0.984 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.399 0.601 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.968 -28.277 -0.236 28.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.178 4.178 12 C 0.299 3.701 13 O -0.415 6.415 14 N -0.396 5.396 15 C 0.001 3.999 16 C -0.137 4.137 17 C -0.118 4.118 18 C -0.171 4.171 19 C -0.127 4.127 20 C -0.158 4.158 21 C -0.159 4.159 22 C -0.121 4.121 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.233 0.767 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.702 -27.980 -0.229 28.373 hybrid contribution -0.164 0.848 0.057 0.866 sum 4.538 -27.132 -0.173 27.509 Atomic orbital electron populations 1.69961 1.06027 1.26508 1.51274 1.25026 0.94869 0.99259 0.95437 0.86586 0.79895 0.83411 0.78087 1.20687 1.21282 1.19845 1.21280 0.93197 0.91025 1.50038 0.92580 1.19136 0.93981 0.91483 0.97110 1.21445 0.98629 0.91574 1.01671 1.21844 0.98145 0.94138 1.03709 1.21273 0.90387 0.83751 0.74671 1.90675 1.17402 1.84760 1.48618 1.46164 1.10033 1.05913 1.77486 1.21225 0.92021 0.84256 1.02357 1.20947 0.97195 0.92341 1.03176 1.20658 0.98850 0.97041 0.95235 1.21964 0.99621 0.98309 0.97219 1.20434 0.98571 0.96024 0.97671 1.21606 1.01566 0.97645 0.95004 1.21612 0.97718 0.97573 0.98971 1.20413 0.97150 0.99810 0.94773 0.93094 0.96617 0.96600 0.92736 0.92725 0.89394 0.89393 0.76735 0.91755 0.91726 0.90662 0.90782 0.87848 0.91206 0.90876 0.91822 0.91806 0.91663 0.91590 0.90907 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 10 C -0.10 -2.10 4.44 -26.73 -0.12 -2.22 16 11 C -0.14 -2.34 5.70 -27.88 -0.16 -2.50 16 12 C 0.51 8.48 7.83 -10.98 -0.09 8.39 16 13 O -0.54 -11.20 15.98 5.56 0.09 -11.12 16 14 N -0.74 -8.93 5.56 -60.29 -0.33 -9.27 16 15 C 0.13 1.38 5.66 -4.04 -0.02 1.36 16 16 C -0.10 -0.79 5.34 -27.88 -0.15 -0.94 16 17 C -0.12 -0.94 5.09 -100.94 -0.51 -1.46 16 18 C -0.15 -1.21 9.37 -35.90 -0.34 -1.55 16 19 C -0.09 -0.60 6.11 -28.18 -0.17 -0.78 16 20 C -0.12 -0.75 6.01 -26.52 -0.16 -0.91 16 21 C -0.12 -0.82 6.01 -26.52 -0.16 -0.98 16 22 C -0.08 -0.62 5.80 -28.18 -0.16 -0.78 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 27 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 28 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.40 3.58 8.47 -40.82 -0.35 3.23 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.78 8.11 -51.93 -0.42 0.36 16 33 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 34 H 0.07 0.54 7.80 -51.93 -0.41 0.14 16 35 H 0.10 0.79 7.74 -52.49 -0.41 0.39 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -33.54 350.85 -9.71 -43.25 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -7.87 Total: -2.84 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -2.59 Total: -15.94 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.40 Total: -35.87 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.54 -9.71 -43.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593941449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.614 kcal (2) G-P(sol) polarization free energy of solvation -33.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds