Wall clock time and date at job start Mon Mar 30 2020 07:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47381 * 269.99981 * 3 2 1 5 5 H 1.48495 * 109.47362 * 29.99733 * 3 2 1 6 6 H 1.48498 * 109.47232 * 150.00025 * 3 2 1 7 7 C 1.37878 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99783 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99788 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46857 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46791 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.46586 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00583 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99740 * 180.02562 * 12 11 10 15 15 C 1.46501 * 119.99865 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.46881 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.47135 * 179.97438 * 16 15 14 18 18 C 1.29445 * 117.95895 * 94.73163 * 17 16 15 19 19 C 1.50074 * 124.07477 * 180.75080 * 18 17 16 20 20 C 1.53016 * 110.14671 * 342.87319 * 19 18 17 21 21 C 1.53391 * 108.44058 * 49.43435 * 20 19 18 22 22 C 1.50066 * 117.96583 * 275.00149 * 17 16 15 23 23 H 0.97001 * 120.00293 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47268 * 60.00540 * 9 7 2 25 25 H 1.08997 * 109.47081 * 299.99983 * 9 7 2 26 26 H 1.09004 * 109.47033 * 60.00417 * 10 9 7 27 27 H 1.08997 * 109.47346 * 299.99924 * 10 9 7 28 28 H 1.08998 * 109.47176 * 60.00739 * 11 10 9 29 29 H 1.08997 * 109.47238 * 300.00143 * 11 10 9 30 30 H 0.96999 * 119.99835 * 359.97438 * 14 12 11 31 31 H 1.08992 * 109.47403 * 59.99682 * 15 14 12 32 32 H 1.09006 * 109.47120 * 299.99358 * 15 14 12 33 33 H 1.08999 * 109.47122 * 59.99342 * 16 15 14 34 34 H 1.08997 * 109.46865 * 299.99588 * 16 15 14 35 35 H 1.07999 * 117.96176 * 0.73020 * 18 17 16 36 36 H 1.09002 * 109.35609 * 222.66402 * 19 18 17 37 37 H 1.09003 * 109.35439 * 103.08085 * 19 18 17 38 38 H 1.09003 * 109.64533 * 289.75036 * 20 19 18 39 39 H 1.09000 * 109.64519 * 169.11862 * 20 19 18 40 40 H 1.09001 * 109.64689 * 172.88318 * 21 20 19 41 41 H 1.09003 * 109.64136 * 52.25083 * 21 20 19 42 42 H 1.09003 * 109.35468 * 282.79297 * 22 17 16 43 43 H 1.08998 * 109.35916 * 42.51411 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4596 -6.1324 0.0005 13 8 3.6520 -5.9109 0.0001 14 7 2.0104 -7.4032 0.0004 15 6 2.9625 -8.5167 0.0004 16 6 2.1975 -9.8417 -0.0004 17 6 3.1768 -10.9871 -0.0011 18 6 3.4995 -11.5104 1.1381 19 6 4.4714 -12.6426 1.2981 20 6 4.6838 -13.3484 -0.0428 21 6 4.9830 -12.2861 -1.1082 22 6 3.7219 -11.4462 -1.3217 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6240 -2.5566 0.8903 26 1 2.8719 -3.6043 0.8906 27 1 2.8720 -3.6043 -0.8894 28 1 0.8534 -5.0451 -0.8886 29 1 0.8539 -5.0445 0.8913 30 1 1.0567 -7.5804 0.0011 31 1 3.5891 -8.4590 0.8903 32 1 3.5891 -8.4589 -0.8897 33 1 1.5711 -9.8991 -0.8906 34 1 1.5706 -9.8998 0.8894 35 1 3.0410 -11.1068 2.0288 36 1 4.0793 -13.3555 2.0236 37 1 5.4243 -12.2529 1.6563 38 1 3.7820 -13.8967 -0.3153 39 1 5.5254 -14.0367 0.0346 40 1 5.2616 -12.7728 -2.0429 41 1 5.7968 -11.6454 -0.7683 42 1 2.9701 -12.0469 -1.8337 43 1 3.9678 -10.5776 -1.9327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593941449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:36 Heat of formation + Delta-G solvation = -90.508087 kcal Electronic energy + Delta-G solvation = -19058.337042 eV Core-core repulsion = 16100.853210 eV Total energy + Delta-G solvation = -2957.483832 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.80228 -39.64396 -36.55543 -36.01162 -34.08442 -33.57475 -31.63655 -30.27025 -28.79547 -25.92412 -24.45953 -23.82448 -22.26894 -22.17366 -21.16177 -18.63314 -18.43350 -17.75667 -17.05395 -16.92835 -16.47782 -16.25735 -15.85293 -15.23328 -14.86760 -14.84008 -14.58246 -14.23988 -13.95746 -13.76993 -13.51811 -13.38013 -13.09022 -12.94707 -12.73307 -12.62204 -12.51450 -12.39216 -12.18768 -11.65658 -11.55564 -11.47269 -11.32312 -11.26597 -11.09864 -10.74128 -10.54374 -10.10522 -9.66377 -8.20298 -6.30174 1.28073 1.39419 1.40596 1.52209 1.65734 2.26327 2.42326 3.12450 3.73946 3.79649 3.93514 4.04842 4.10702 4.13717 4.25364 4.27837 4.37174 4.42569 4.49754 4.62364 4.70446 4.74090 4.81800 4.89628 4.98030 5.01040 5.05267 5.08331 5.11590 5.13270 5.19145 5.20047 5.33884 5.45324 5.46980 5.54874 5.75743 5.77378 5.87039 6.11572 6.27704 6.57375 6.85136 7.28662 7.38322 8.91156 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.056635 B = 0.002374 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.278547 B =11791.868991 C =11940.995805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.026 3.974 10 C -0.083 4.083 11 C -0.130 4.130 12 C 0.513 3.487 13 O -0.588 6.588 14 N -0.719 5.719 15 C 0.127 3.873 16 C -0.088 4.088 17 C -0.128 4.128 18 C -0.158 4.158 19 C -0.093 4.093 20 C -0.119 4.119 21 C -0.123 4.123 22 C -0.086 4.086 23 H 0.265 0.735 24 H 0.002 0.998 25 H 0.002 0.998 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.418 0.582 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.082 0.918 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.589 -29.324 -0.289 29.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.069 0.931 9 C -0.012 4.012 10 C -0.122 4.122 11 C -0.170 4.170 12 C 0.301 3.699 13 O -0.468 6.468 14 N -0.373 5.373 15 C 0.003 3.997 16 C -0.125 4.125 17 C -0.129 4.129 18 C -0.176 4.176 19 C -0.130 4.130 20 C -0.156 4.156 21 C -0.160 4.160 22 C -0.123 4.123 23 H 0.073 0.927 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.255 0.745 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.281 -29.073 -0.284 29.388 hybrid contribution -0.067 1.126 0.086 1.131 sum 4.215 -27.947 -0.198 28.264 Atomic orbital electron populations 1.70062 1.07459 1.27789 1.51567 1.25917 0.95868 1.03092 0.94719 0.85489 0.78598 0.78668 0.78554 1.19683 1.20254 1.19347 1.21692 0.93317 0.92851 1.50720 0.93144 1.19025 0.94198 0.92339 0.95588 1.21168 0.97653 0.93132 1.00198 1.21681 0.97872 0.91558 1.05843 1.21120 0.89374 0.84991 0.74393 1.90663 1.19228 1.85599 1.51313 1.45938 1.11381 1.04694 1.75245 1.21269 0.92032 0.85250 1.01102 1.20870 0.96986 0.90265 1.04401 1.20761 0.99220 0.97226 0.95656 1.22153 0.99603 0.98586 0.97227 1.20487 0.98228 0.95962 0.98315 1.21604 1.02081 0.97525 0.94410 1.21626 0.97132 0.97602 0.99659 1.20440 0.97636 0.99796 0.94429 0.92650 0.97983 0.97991 0.94250 0.94182 0.87228 0.87270 0.74509 0.93239 0.92880 0.89302 0.89648 0.87769 0.90194 0.91074 0.91535 0.90875 0.90738 0.92675 0.89968 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.96 45.60 29.54 68.60 2.03 47.63 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 7 C -0.55 -32.63 9.11 25.60 0.23 -32.39 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 9 C 0.03 1.37 4.97 29.85 0.15 1.52 16 10 C -0.08 -3.74 4.44 30.60 0.14 -3.60 16 11 C -0.13 -4.24 5.70 29.85 0.17 -4.07 16 12 C 0.51 16.61 7.83 87.66 0.69 17.29 16 13 O -0.59 -24.73 15.98 -3.03 -0.05 -24.78 16 14 N -0.72 -16.07 5.56 -463.05 -2.57 -18.64 16 15 C 0.13 2.67 5.66 86.38 0.49 3.16 16 16 C -0.09 -1.22 5.34 29.85 0.16 -1.06 16 17 C -0.13 -1.88 5.09 -15.10 -0.08 -1.96 16 18 C -0.16 -2.28 9.37 27.04 0.25 -2.03 16 19 C -0.09 -1.13 6.11 29.66 0.18 -0.95 16 20 C -0.12 -1.29 6.01 30.73 0.18 -1.11 16 21 C -0.12 -1.52 6.01 30.73 0.18 -1.34 16 22 C -0.09 -1.15 5.80 29.66 0.17 -0.98 16 23 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 24 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 25 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 26 H 0.04 1.85 8.10 -2.38 -0.02 1.83 16 27 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 28 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 29 H 0.11 3.12 8.14 -2.39 -0.02 3.11 16 30 H 0.42 6.30 8.47 -92.71 -0.79 5.51 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.27 8.11 -2.38 -0.02 1.25 16 33 H 0.09 1.03 8.11 -2.39 -0.02 1.01 16 34 H 0.08 1.02 7.80 -2.39 -0.02 1.00 16 35 H 0.10 1.46 7.74 -2.91 -0.02 1.43 16 36 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 0.70 8.12 -2.39 -0.02 0.68 16 39 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.05 0.80 8.12 -2.39 -0.02 0.78 16 42 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 0.97 8.11 -2.39 -0.02 0.96 16 Total: -1.00 -72.63 350.85 3.24 -69.38 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 0.17 Total: 9.75 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 3.38 Total: -26.94 kcal Atomic # 7 Polarization: -72.76 SS G_CDS: -2.29 Total: -75.05 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.05 Total: -24.78 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -72.63 3.24 -69.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593941449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.125 kcal (2) G-P(sol) polarization free energy of solvation -72.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds