Wall clock time and date at job start Mon Mar 30 2020 07:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00195 * 2 1 4 4 H 1.48498 * 109.47186 * 270.00533 * 3 2 1 5 5 H 1.48500 * 109.46772 * 30.00262 * 3 2 1 6 6 H 1.48497 * 109.47023 * 150.00137 * 3 2 1 7 7 C 1.37877 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99804 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99902 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47020 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47190 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47086 * 179.97438 * 11 10 9 13 13 O 1.21281 * 120.00156 * 4.86791 * 12 11 10 14 14 N 1.34771 * 120.00080 * 184.86214 * 12 11 10 15 15 C 1.46506 * 120.00257 * 186.26211 * 14 12 11 16 16 C 1.52995 * 117.49744 * 16.66976 * 15 14 12 17 17 C 1.52999 * 117.49801 * 308.01331 * 15 14 12 18 18 C 1.46497 * 120.00058 * 6.26528 * 14 12 11 19 19 C 1.54269 * 110.03410 * 59.88479 * 18 14 12 20 20 C 1.54961 * 104.16097 * 217.13806 * 19 18 14 21 21 C 1.54883 * 102.77917 * 37.88838 * 20 19 18 22 22 C 1.53877 * 110.03207 * 302.66939 * 18 14 12 23 23 H 0.97011 * 119.99816 * 359.97438 * 1 2 3 24 24 H 1.08990 * 109.47419 * 59.99745 * 9 7 2 25 25 H 1.09001 * 109.46978 * 299.99303 * 9 7 2 26 26 H 1.09004 * 109.47030 * 59.99664 * 10 9 7 27 27 H 1.09001 * 109.46944 * 299.99652 * 10 9 7 28 28 H 1.09001 * 109.47136 * 299.99833 * 11 10 9 29 29 H 1.08997 * 109.46783 * 59.99963 * 11 10 9 30 30 H 1.09000 * 115.54829 * 162.34160 * 15 14 12 31 31 H 1.09002 * 117.50079 * 0.02562 * 16 15 14 32 32 H 1.09006 * 117.50031 * 145.01643 * 16 15 14 33 33 H 1.08995 * 117.49836 * 214.98026 * 17 15 14 34 34 H 1.09002 * 117.49737 * 359.97438 * 17 15 14 35 35 H 1.09005 * 110.02233 * 181.27523 * 18 14 12 36 36 H 1.09001 * 110.48728 * 335.78817 * 19 18 14 37 37 H 1.09004 * 110.48670 * 98.42770 * 19 18 14 38 38 H 1.08998 * 110.72274 * 279.56711 * 20 19 18 39 39 H 1.09007 * 110.92170 * 156.29326 * 20 19 18 40 40 H 1.09003 * 110.49139 * 203.40368 * 21 20 19 41 41 H 1.09007 * 110.59976 * 80.81503 * 21 20 19 42 42 H 1.09002 * 110.02972 * 238.56790 * 22 18 14 43 43 H 1.08993 * 110.03145 * 359.94922 * 22 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6367 -0.0001 12 6 6.0537 -4.0575 0.0004 13 8 5.2692 -4.9781 -0.0884 14 7 7.3748 -4.3052 0.0994 15 6 7.8756 -5.6751 -0.0377 16 6 6.9407 -6.7092 -0.6681 17 6 7.2299 -6.7538 0.8343 18 6 8.3101 -3.2045 0.3441 19 6 7.9682 -2.5069 1.6768 20 6 8.2412 -1.0067 1.4004 21 6 7.7497 -0.8321 -0.0579 22 6 8.1717 -2.1402 -0.7585 23 1 -0.4850 0.8402 0.0004 24 1 3.8745 -0.6808 0.8904 25 1 3.8751 -0.6797 -0.8895 26 1 3.6584 -3.1503 -0.8903 27 1 3.6578 -3.1506 0.8897 28 1 5.9148 -2.1228 -0.8901 29 1 5.9148 -2.1229 0.8899 30 1 8.9416 -5.7674 -0.2457 31 1 5.9531 -6.3702 -0.9812 32 1 7.3916 -7.4821 -1.2906 33 1 7.8711 -7.5560 1.1997 34 1 6.4329 -6.4441 1.5103 35 1 9.3321 -3.5825 0.3720 36 1 6.9199 -2.6631 1.9313 37 1 8.6140 -2.8722 2.4754 38 1 9.3061 -0.7878 1.4781 39 1 7.6681 -0.3752 2.0794 40 1 8.2361 0.0246 -0.5245 41 1 6.6662 -0.7166 -0.0863 42 1 9.1268 -2.0011 -1.2652 43 1 7.4093 -2.4430 -1.4762 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593958309.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:14 Heat of formation + Delta-G solvation = -23.015571 kcal Electronic energy + Delta-G solvation = -21233.847518 eV Core-core repulsion = 18279.290381 eV Total energy + Delta-G solvation = -2954.557137 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.96079 -38.94719 -37.68453 -35.96407 -34.09025 -33.98319 -30.37932 -29.62793 -28.25081 -26.14483 -23.67431 -23.27406 -22.11437 -21.75530 -21.30539 -19.93672 -18.92729 -17.78004 -17.22400 -16.90003 -16.34816 -16.12812 -15.57453 -15.49274 -15.23713 -14.74768 -14.63839 -14.36553 -14.05268 -13.73412 -13.31434 -13.05530 -12.77394 -12.57631 -12.42039 -12.21200 -11.97597 -11.89933 -11.84145 -11.76926 -11.74020 -11.57299 -11.51248 -11.35794 -11.22572 -11.04177 -10.76380 -10.35768 -9.36778 -8.28955 -6.34798 1.36755 1.40417 1.52539 1.53094 1.90829 2.37874 2.97773 3.05957 3.47193 3.67149 3.73007 3.94189 4.05920 4.09711 4.13181 4.15165 4.17993 4.47872 4.52355 4.59061 4.62363 4.64377 4.70749 4.81249 4.82262 4.85736 4.89822 4.98628 5.06082 5.08761 5.14033 5.25503 5.31152 5.36808 5.41336 5.49244 5.55308 5.56731 5.65762 5.83934 6.28551 6.39295 6.73261 7.21949 7.29664 8.88776 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.020835 B = 0.005665 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.564841 B = 4941.264103 C = 5963.822722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.001 4.001 3 Si 0.959 3.041 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.235 1.235 7 C -0.540 4.540 8 H 0.018 0.982 9 C -0.004 4.004 10 C -0.081 4.081 11 C -0.149 4.149 12 C 0.511 3.489 13 O -0.570 6.570 14 N -0.581 5.581 15 C 0.078 3.922 16 C -0.208 4.208 17 C -0.188 4.188 18 C 0.140 3.860 19 C -0.149 4.149 20 C -0.117 4.117 21 C -0.146 4.146 22 C -0.142 4.142 23 H 0.267 0.733 24 H 0.028 0.972 25 H 0.027 0.973 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.168 0.832 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.062 0.938 35 H 0.127 0.873 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.098 0.902 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.678 -4.283 1.038 28.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.197 4.197 3 Si 0.780 3.220 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.158 1.158 7 C -0.578 4.578 8 H 0.037 0.963 9 C -0.042 4.042 10 C -0.119 4.119 11 C -0.187 4.187 12 C 0.302 3.698 13 O -0.450 6.450 14 N -0.311 5.311 15 C -0.026 4.026 16 C -0.245 4.245 17 C -0.227 4.227 18 C 0.038 3.962 19 C -0.187 4.187 20 C -0.154 4.154 21 C -0.183 4.183 22 C -0.180 4.180 23 H 0.075 0.925 24 H 0.047 0.953 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.185 0.815 31 H 0.114 0.886 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.081 0.919 35 H 0.145 0.855 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.116 0.884 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 27.148 -4.659 0.990 27.563 hybrid contribution -1.067 0.296 0.004 1.107 sum 26.081 -4.364 0.994 26.462 Atomic orbital electron populations 1.70108 1.08668 1.28300 1.52602 1.26171 0.95720 1.04024 0.93758 0.85543 0.79771 0.77157 0.79508 1.18791 1.21020 1.15821 1.21521 0.92554 0.92852 1.50864 0.96331 1.19492 0.93568 0.94038 0.97066 1.21080 0.93548 0.97304 0.99959 1.22675 0.96244 0.93443 1.06377 1.21082 0.82146 0.91846 0.74736 1.90556 1.56783 1.47049 1.50641 1.47687 1.05590 1.07621 1.70247 1.22070 0.98041 0.78017 1.04474 1.23674 1.02810 1.01520 0.96523 1.23202 1.03463 1.02237 0.93763 1.22116 0.93801 0.85770 0.94544 1.23052 1.01631 0.96635 0.97336 1.22458 1.02523 0.94513 0.95937 1.22748 1.01571 0.97707 0.96303 1.22764 1.03099 0.94571 0.97555 0.92461 0.95324 0.95476 0.94679 0.94884 0.86491 0.86352 0.81518 0.88600 0.87087 0.86056 0.91936 0.85482 0.92747 0.89402 0.88911 0.91579 0.89987 0.92048 0.88373 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.32 13.96 21.45 0.30 -62.02 16 2 C 0.00 -0.04 5.47 84.65 0.46 0.42 16 3 Si 0.96 44.27 27.47 68.60 1.88 46.16 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.24 -9.68 6.54 99.48 0.65 -9.03 16 7 C -0.54 -33.09 9.66 25.60 0.25 -32.84 16 8 H 0.02 1.28 7.99 -2.91 -0.02 1.25 16 9 C 0.00 -0.21 4.04 29.85 0.12 -0.09 16 10 C -0.08 -3.56 4.46 30.60 0.14 -3.43 16 11 C -0.15 -4.80 2.73 29.85 0.08 -4.72 16 12 C 0.51 16.65 6.47 87.66 0.57 17.22 16 13 O -0.57 -23.35 11.72 -3.03 -0.04 -23.39 16 14 N -0.58 -13.45 2.80 -770.05 -2.16 -15.60 16 15 C 0.08 1.56 6.58 44.99 0.30 1.86 16 16 C -0.21 -5.18 9.63 30.61 0.29 -4.89 16 17 C -0.19 -4.33 9.87 30.62 0.30 -4.03 16 18 C 0.14 2.19 3.37 45.72 0.15 2.34 16 19 C -0.15 -2.46 5.85 31.70 0.19 -2.28 16 20 C -0.12 -1.68 6.75 31.91 0.22 -1.46 16 21 C -0.15 -2.44 5.98 31.67 0.19 -2.25 16 22 C -0.14 -2.20 5.64 31.32 0.18 -2.02 16 23 H 0.27 16.06 8.31 -92.70 -0.77 15.29 16 24 H 0.03 1.30 7.20 -2.39 -0.02 1.28 16 25 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 26 H 0.03 1.68 8.05 -2.38 -0.02 1.66 16 27 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.12 3.36 4.57 -2.39 -0.01 3.35 16 29 H 0.12 3.41 3.73 -2.39 -0.01 3.40 16 30 H 0.17 1.93 8.01 -2.39 -0.02 1.91 16 31 H 0.10 3.29 5.25 -4.06 -0.02 3.27 16 32 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.06 1.89 7.57 -2.39 -0.02 1.87 16 35 H 0.13 1.18 7.86 -2.38 -0.02 1.16 16 36 H 0.05 1.24 5.22 -2.39 -0.01 1.22 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.06 1.35 5.27 -2.38 -0.01 1.33 16 42 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.18 5.63 -2.39 -0.01 1.16 16 Total: -1.00 -77.12 320.58 4.35 -72.77 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.93 Total: 18.24 kcal Atomic # 6 Polarization: -39.58 SS G_CDS: 3.43 Total: -36.15 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -1.86 Total: -77.63 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.04 Total: -23.39 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.16 kcal Total: -77.12 4.35 -72.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593958309.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.758 kcal (2) G-P(sol) polarization free energy of solvation -77.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds