Wall clock time and date at job start Mon Mar 30 2020 06:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00054 * 2 1 4 4 H 1.48502 * 109.47119 * 239.99740 * 3 2 1 5 5 H 1.48500 * 109.47379 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47355 * 119.99922 * 3 2 1 7 7 C 1.37875 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00041 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47290 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47290 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46885 * 180.02562 * 11 10 9 13 13 O 1.21281 * 120.00352 * 359.97438 * 12 11 10 14 14 N 1.34783 * 119.99598 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00048 * 0.02562 * 14 12 11 16 16 C 1.53006 * 109.46726 * 269.99755 * 15 14 12 17 17 C 1.53001 * 117.49866 * 243.62197 * 16 15 14 18 18 C 1.53000 * 117.49497 * 174.99789 * 16 15 14 19 19 C 1.46504 * 119.99550 * 179.97438 * 14 12 11 20 20 C 1.52995 * 109.46979 * 269.99999 * 19 14 12 21 21 C 1.53009 * 117.49573 * 243.62535 * 20 19 14 22 22 C 1.53003 * 117.49703 * 175.00483 * 20 19 14 23 23 H 0.97000 * 119.99740 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47582 * 59.99862 * 9 7 2 25 25 H 1.08995 * 109.47167 * 299.99689 * 9 7 2 26 26 H 1.09001 * 109.47107 * 59.99893 * 10 9 7 27 27 H 1.08995 * 109.47037 * 300.00106 * 10 9 7 28 28 H 1.09001 * 109.47031 * 59.99970 * 11 10 9 29 29 H 1.08996 * 109.46808 * 300.00358 * 11 10 9 30 30 H 1.08995 * 109.47463 * 150.00191 * 15 14 12 31 31 H 1.09000 * 109.47136 * 29.99756 * 15 14 12 32 32 H 1.08996 * 115.55031 * 29.33683 * 16 15 14 33 33 H 1.08996 * 117.49555 * 359.97438 * 17 16 15 34 34 H 1.08995 * 117.49577 * 145.02406 * 17 16 15 35 35 H 1.08998 * 117.49694 * 214.97781 * 18 16 15 36 36 H 1.08998 * 117.50118 * 359.97438 * 18 16 15 37 37 H 1.08991 * 109.47330 * 30.00143 * 19 14 12 38 38 H 1.09000 * 109.46366 * 150.00251 * 19 14 12 39 39 H 1.08997 * 115.55756 * 29.33159 * 20 19 14 40 40 H 1.08996 * 117.49733 * 359.97438 * 21 20 19 41 41 H 1.08997 * 117.49544 * 145.02763 * 21 20 19 42 42 H 1.08997 * 117.49954 * 214.98046 * 22 20 19 43 43 H 1.08997 * 117.49911 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4596 -6.1325 0.0018 13 8 3.6520 -5.9109 0.0013 14 7 2.0102 -7.4032 0.0019 15 6 0.5699 -7.6709 0.0009 16 6 0.0674 -7.7636 1.4431 17 6 -0.5012 -9.1057 1.9082 18 6 -1.4391 -7.9231 1.6573 19 6 2.9623 -8.5167 0.0020 20 6 3.2937 -8.9044 -1.4405 21 6 2.8919 -10.3057 -1.9054 22 6 4.3649 -9.9755 -1.6558 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8719 -3.6043 -0.8894 28 1 0.8533 -5.0451 -0.8886 29 1 0.8539 -5.0445 0.8913 30 1 0.3757 -8.6124 -0.5127 31 1 0.0505 -6.8624 -0.5137 32 1 0.6194 -7.1706 2.1723 33 1 -0.5177 -9.9224 1.1866 34 1 -0.3232 -9.3960 2.9436 35 1 -1.8780 -7.4355 2.5277 36 1 -2.0722 -7.9615 0.7709 37 1 3.8748 -8.2146 0.5157 38 1 2.5219 -9.3712 0.5159 39 1 3.2364 -8.0963 -2.1696 40 1 2.3919 -10.9514 -1.1835 41 1 2.5701 -10.4195 -2.9406 42 1 5.0121 -9.8720 -2.5267 43 1 4.8338 -10.4035 -0.7699 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593978828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:25 Heat of formation + Delta-G solvation = -7.285956 kcal Electronic energy + Delta-G solvation = -20007.994035 eV Core-core repulsion = 17054.118986 eV Total energy + Delta-G solvation = -2953.875049 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.97850 -37.62575 -37.40360 -34.55457 -34.15654 -32.00422 -28.90157 -27.55908 -25.99022 -23.55476 -22.60266 -22.52554 -21.14949 -21.07006 -20.05563 -18.76703 -16.88762 -16.60905 -16.06282 -15.75011 -15.42090 -14.73107 -14.45142 -14.35727 -14.28527 -13.18948 -13.10257 -12.84869 -12.71558 -12.18803 -12.01849 -11.76329 -11.73471 -11.67535 -11.61085 -11.28417 -10.76386 -10.68824 -10.62152 -10.55621 -10.49672 -10.15546 -10.06801 -9.62521 -9.56930 -9.21316 -8.98146 -8.64329 -8.28798 -5.94761 -3.96014 2.93470 3.00978 3.38559 3.41766 3.45811 3.60510 3.67268 4.47349 4.52074 4.61938 4.68902 4.71188 4.77485 4.84675 4.96138 5.16097 5.20095 5.38280 5.41184 5.41907 5.44347 5.46367 5.55443 5.67841 5.70419 5.72688 5.77895 5.81915 5.90513 5.93351 6.01212 6.08997 6.32329 6.62592 6.77325 6.98098 7.20322 7.50901 7.74311 7.87709 8.06180 8.46976 8.50586 9.10857 9.67696 11.16713 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.020085 B = 0.003964 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.727664 B = 7062.319699 C = 8151.854657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.137 4.137 12 C 0.514 3.486 13 O -0.534 6.534 14 N -0.615 5.615 15 C 0.142 3.858 16 C -0.172 4.172 17 C -0.181 4.181 18 C -0.172 4.172 19 C 0.147 3.853 20 C -0.163 4.163 21 C -0.182 4.182 22 C -0.175 4.175 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.932 -22.938 0.034 22.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.176 4.176 12 C 0.304 3.696 13 O -0.410 6.410 14 N -0.349 5.349 15 C 0.019 3.981 16 C -0.192 4.192 17 C -0.218 4.218 18 C -0.210 4.210 19 C 0.024 3.976 20 C -0.183 4.183 21 C -0.219 4.219 22 C -0.213 4.213 23 H 0.070 0.930 24 H 0.033 0.967 25 H 0.034 0.966 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.126 0.874 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.124 0.876 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.429 -22.679 0.034 22.683 hybrid contribution 0.290 0.829 -0.001 0.878 sum -0.139 -21.850 0.034 21.851 Atomic orbital electron populations 1.69955 1.06018 1.26595 1.51196 1.25011 0.94849 0.99191 0.95408 0.86662 0.79581 0.83112 0.78681 1.20243 1.21343 1.20237 1.21244 0.93151 0.91057 1.50179 0.92660 1.19116 0.93943 0.91426 0.97069 1.21456 0.98630 0.91664 1.01591 1.21878 0.98164 0.94055 1.03546 1.21304 0.90211 0.83595 0.74524 1.90670 1.17352 1.84275 1.48667 1.48012 1.06236 1.05806 1.74833 1.21145 0.80390 1.02542 0.94072 1.22873 0.96712 1.00851 0.98751 1.23028 1.04809 0.91759 1.02203 1.22940 0.92290 1.02101 1.03660 1.20927 0.93894 0.88922 0.93815 1.22786 1.03913 0.92627 0.98929 1.23048 0.98070 0.98611 1.02199 1.22903 0.91824 1.03197 1.03371 0.93048 0.96666 0.96630 0.92790 0.92794 0.89525 0.89373 0.90372 0.89338 0.87377 0.88912 0.89046 0.88536 0.88505 0.89638 0.90748 0.87640 0.88905 0.89035 0.88814 0.88750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -2.11 4.44 -26.73 -0.12 -2.23 16 11 C -0.14 -2.35 4.25 -27.88 -0.12 -2.47 16 12 C 0.51 8.58 7.67 -10.98 -0.08 8.50 16 13 O -0.53 -10.94 15.56 5.56 0.09 -10.85 16 14 N -0.62 -7.77 2.47 -173.69 -0.43 -8.20 16 15 C 0.14 1.41 5.49 -4.04 -0.02 1.39 16 16 C -0.17 -1.66 5.94 -90.62 -0.54 -2.20 16 17 C -0.18 -1.43 10.18 -26.73 -0.27 -1.70 16 18 C -0.17 -1.45 10.25 -26.73 -0.27 -1.73 16 19 C 0.15 1.66 5.69 -4.04 -0.02 1.64 16 20 C -0.16 -1.74 6.01 -90.62 -0.54 -2.29 16 21 C -0.18 -1.51 10.18 -26.72 -0.27 -1.78 16 22 C -0.18 -1.58 10.25 -26.73 -0.27 -1.85 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 27 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 28 H 0.09 1.36 7.40 -51.93 -0.38 0.98 16 29 H 0.09 1.41 8.04 -51.93 -0.42 0.99 16 30 H 0.08 0.64 7.80 -51.93 -0.41 0.24 16 31 H 0.09 0.89 6.44 -51.93 -0.33 0.56 16 32 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.09 0.63 8.03 -51.93 -0.42 0.22 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.09 1.12 7.42 -51.93 -0.39 0.74 16 38 H 0.07 0.68 7.81 -51.93 -0.41 0.27 16 39 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.09 0.66 8.03 -51.93 -0.42 0.25 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 356.72 15.07 5.38 5.38 Total: -1.00 -32.63 356.72 -10.12 -42.75 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -7.78 Total: -1.51 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -3.09 Total: -18.22 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.31 Total: -34.73 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.63 -10.12 -42.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593978828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.468 kcal (2) G-P(sol) polarization free energy of solvation -32.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds