Wall clock time and date at job start Mon Mar 30 2020 06:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00054 * 2 1 4 4 H 1.48502 * 109.47119 * 239.99740 * 3 2 1 5 5 H 1.48500 * 109.47379 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47355 * 119.99922 * 3 2 1 7 7 C 1.37875 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00041 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47290 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47290 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.46885 * 180.02562 * 11 10 9 13 13 O 1.21281 * 120.00352 * 359.97438 * 12 11 10 14 14 N 1.34783 * 119.99598 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00048 * 0.02562 * 14 12 11 16 16 C 1.53006 * 109.46726 * 269.99755 * 15 14 12 17 17 C 1.53001 * 117.49866 * 243.62197 * 16 15 14 18 18 C 1.53000 * 117.49497 * 174.99789 * 16 15 14 19 19 C 1.46504 * 119.99550 * 179.97438 * 14 12 11 20 20 C 1.52995 * 109.46979 * 269.99999 * 19 14 12 21 21 C 1.53009 * 117.49573 * 243.62535 * 20 19 14 22 22 C 1.53003 * 117.49703 * 175.00483 * 20 19 14 23 23 H 0.97000 * 119.99740 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47582 * 59.99862 * 9 7 2 25 25 H 1.08995 * 109.47167 * 299.99689 * 9 7 2 26 26 H 1.09001 * 109.47107 * 59.99893 * 10 9 7 27 27 H 1.08995 * 109.47037 * 300.00106 * 10 9 7 28 28 H 1.09001 * 109.47031 * 59.99970 * 11 10 9 29 29 H 1.08996 * 109.46808 * 300.00358 * 11 10 9 30 30 H 1.08995 * 109.47463 * 150.00191 * 15 14 12 31 31 H 1.09000 * 109.47136 * 29.99756 * 15 14 12 32 32 H 1.08996 * 115.55031 * 29.33683 * 16 15 14 33 33 H 1.08996 * 117.49555 * 359.97438 * 17 16 15 34 34 H 1.08995 * 117.49577 * 145.02406 * 17 16 15 35 35 H 1.08998 * 117.49694 * 214.97781 * 18 16 15 36 36 H 1.08998 * 117.50118 * 359.97438 * 18 16 15 37 37 H 1.08991 * 109.47330 * 30.00143 * 19 14 12 38 38 H 1.09000 * 109.46366 * 150.00251 * 19 14 12 39 39 H 1.08997 * 115.55756 * 29.33159 * 20 19 14 40 40 H 1.08996 * 117.49733 * 359.97438 * 21 20 19 41 41 H 1.08997 * 117.49544 * 145.02763 * 21 20 19 42 42 H 1.08997 * 117.49954 * 214.98046 * 22 20 19 43 43 H 1.08997 * 117.49911 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4596 -6.1325 0.0018 13 8 3.6520 -5.9109 0.0013 14 7 2.0102 -7.4032 0.0019 15 6 0.5699 -7.6709 0.0009 16 6 0.0674 -7.7636 1.4431 17 6 -0.5012 -9.1057 1.9082 18 6 -1.4391 -7.9231 1.6573 19 6 2.9623 -8.5167 0.0020 20 6 3.2937 -8.9044 -1.4405 21 6 2.8919 -10.3057 -1.9054 22 6 4.3649 -9.9755 -1.6558 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8719 -3.6043 -0.8894 28 1 0.8533 -5.0451 -0.8886 29 1 0.8539 -5.0445 0.8913 30 1 0.3757 -8.6124 -0.5127 31 1 0.0505 -6.8624 -0.5137 32 1 0.6194 -7.1706 2.1723 33 1 -0.5177 -9.9224 1.1866 34 1 -0.3232 -9.3960 2.9436 35 1 -1.8780 -7.4355 2.5277 36 1 -2.0722 -7.9615 0.7709 37 1 3.8748 -8.2146 0.5157 38 1 2.5219 -9.3712 0.5159 39 1 3.2364 -8.0963 -2.1696 40 1 2.3919 -10.9514 -1.1835 41 1 2.5701 -10.4195 -2.9406 42 1 5.0121 -9.8720 -2.5267 43 1 4.8338 -10.4035 -0.7699 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593978828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:25 Heat of formation + Delta-G solvation = -24.086139 kcal Electronic energy + Delta-G solvation = -20008.722546 eV Core-core repulsion = 17054.118986 eV Total energy + Delta-G solvation = -2954.603560 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.16117 -38.59841 -38.13560 -36.14947 -35.55718 -34.02618 -30.35002 -28.81071 -27.26817 -25.36318 -23.27407 -23.16097 -22.44664 -21.88410 -21.53512 -19.95026 -18.53340 -17.83662 -17.61279 -16.91690 -16.49327 -16.14354 -15.87599 -15.58713 -14.98953 -14.59809 -14.49701 -14.07157 -13.86397 -13.70018 -13.49191 -13.17915 -12.83035 -12.59605 -12.52328 -12.45320 -12.37050 -12.33191 -12.27649 -11.58853 -11.48030 -11.42216 -11.30353 -11.26988 -10.87964 -10.83995 -10.61848 -10.54302 -9.69736 -8.20190 -6.30413 1.39165 1.42248 1.50354 1.61591 1.96899 2.41561 2.89836 2.96567 3.12515 3.55726 3.81467 3.91117 4.01296 4.04322 4.07416 4.13739 4.18960 4.23294 4.29319 4.39457 4.57177 4.67818 4.70960 4.79071 4.80924 4.85807 4.87721 4.96200 5.02858 5.08524 5.10461 5.17315 5.21397 5.26839 5.32200 5.33460 5.52293 5.66079 5.74028 5.85546 6.26168 6.37049 6.84258 7.19633 7.38090 8.91181 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.020085 B = 0.003964 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.727664 B = 7062.319699 C = 8151.854657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.961 3.039 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.050 0.950 9 C 0.029 3.971 10 C -0.082 4.082 11 C -0.127 4.127 12 C 0.514 3.486 13 O -0.582 6.582 14 N -0.602 5.602 15 C 0.140 3.860 16 C -0.188 4.188 17 C -0.165 4.165 18 C -0.173 4.173 19 C 0.149 3.851 20 C -0.185 4.185 21 C -0.158 4.158 22 C -0.177 4.177 23 H 0.265 0.735 24 H 0.001 0.999 25 H 0.000 1.000 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.061 0.939 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.595 -24.691 -0.120 24.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.786 3.214 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.588 4.588 8 H 0.069 0.931 9 C -0.008 4.008 10 C -0.120 4.120 11 C -0.166 4.166 12 C 0.303 3.697 13 O -0.461 6.461 14 N -0.333 5.333 15 C 0.017 3.983 16 C -0.208 4.208 17 C -0.201 4.201 18 C -0.210 4.210 19 C 0.027 3.973 20 C -0.204 4.204 21 C -0.194 4.194 22 C -0.215 4.215 23 H 0.074 0.926 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.124 0.876 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.130 0.870 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.126 0.874 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.132 0.868 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.124 -24.479 -0.119 24.505 hybrid contribution 0.450 1.321 0.054 1.396 sum -0.673 -23.158 -0.065 23.168 Atomic orbital electron populations 1.70060 1.07478 1.27868 1.51418 1.25897 0.95833 1.03012 0.94600 0.85560 0.78415 0.78390 0.79053 1.19444 1.20223 1.19453 1.21655 0.93310 0.92826 1.50993 0.93141 1.18989 0.94104 0.92294 0.95457 1.21169 0.97634 0.93080 1.00107 1.21684 0.97935 0.91934 1.05063 1.21088 0.89187 0.84878 0.74511 1.90650 1.18965 1.85167 1.51361 1.47969 1.07922 1.04738 1.72695 1.21370 0.78265 1.03877 0.94745 1.22716 0.97555 1.02607 0.97908 1.23118 1.02857 0.91339 1.02824 1.23019 0.91544 1.02417 1.04033 1.21031 0.92863 0.88932 0.94502 1.22602 1.06760 0.93258 0.97787 1.23137 0.97139 0.96136 1.03029 1.23006 0.92497 1.02120 1.03827 0.92621 0.98092 0.98148 0.94291 0.94220 0.87788 0.88037 0.87603 0.89514 0.89581 0.87013 0.88798 0.88945 0.87361 0.92062 0.87708 0.90345 0.86836 0.88361 0.88883 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 2 C 0.00 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.96 45.69 29.54 68.60 2.03 47.72 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.55 -32.98 9.11 25.60 0.23 -32.75 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.03 1.56 4.97 29.85 0.15 1.71 16 10 C -0.08 -3.76 4.44 30.60 0.14 -3.63 16 11 C -0.13 -4.42 4.25 29.85 0.13 -4.29 16 12 C 0.51 17.49 7.67 87.66 0.67 18.16 16 13 O -0.58 -24.83 15.56 -3.03 -0.05 -24.88 16 14 N -0.60 -14.76 2.47 -821.81 -2.03 -16.79 16 15 C 0.14 2.48 5.49 86.38 0.47 2.96 16 16 C -0.19 -3.30 5.94 -10.79 -0.06 -3.36 16 17 C -0.16 -2.09 10.18 30.60 0.31 -1.78 16 18 C -0.17 -2.54 10.25 30.60 0.31 -2.23 16 19 C 0.15 3.19 5.69 86.38 0.49 3.68 16 20 C -0.18 -3.74 6.01 -10.79 -0.06 -3.80 16 21 C -0.16 -2.13 10.18 30.60 0.31 -1.82 16 22 C -0.18 -2.89 10.25 30.60 0.31 -2.58 16 23 H 0.27 15.20 8.31 -92.71 -0.77 14.42 16 24 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 25 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 26 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 27 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 28 H 0.10 3.25 7.40 -2.39 -0.02 3.24 16 29 H 0.10 3.26 8.04 -2.39 -0.02 3.24 16 30 H 0.11 1.34 7.80 -2.39 -0.02 1.32 16 31 H 0.09 1.59 6.44 -2.39 -0.02 1.58 16 32 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.11 1.03 8.03 -2.39 -0.02 1.01 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.06 1.62 7.42 -2.39 -0.02 1.61 16 38 H 0.10 1.59 7.81 -2.39 -0.02 1.57 16 39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.11 1.10 8.03 -2.39 -0.02 1.08 16 41 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -72.13 356.72 5.05 -67.08 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.95 Total: 12.43 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: 3.87 Total: -28.99 kcal Atomic # 7 Polarization: -71.62 SS G_CDS: -1.75 Total: -73.36 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.05 Total: -24.88 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -72.13 5.05 -67.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593978828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.995 kcal (2) G-P(sol) polarization free energy of solvation -72.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds