Wall clock time and date at job start Mon Mar 30 2020 06:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00052 * 2 1 4 4 H 1.48496 * 109.47436 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46873 * 300.00196 * 3 2 1 6 6 H 1.48499 * 109.46878 * 59.99739 * 3 2 1 7 7 C 1.37874 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99810 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00347 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47168 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46873 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.46759 * 180.02562 * 11 10 9 13 13 O 1.21281 * 120.00117 * 359.97438 * 12 11 10 14 14 N 1.34604 * 120.00001 * 179.97438 * 12 11 10 15 15 C 1.47261 * 122.39559 * 179.97438 * 14 12 11 16 16 C 1.52572 * 108.56443 * 119.29507 * 15 14 12 17 17 C 1.51936 * 112.84045 * 51.31685 * 16 15 14 18 18 C 1.51926 * 113.92268 * 313.44372 * 17 16 15 19 19 C 1.47268 * 122.38669 * 359.94884 * 14 12 11 20 20 C 1.52609 * 108.55607 * 119.52114 * 19 14 12 21 21 C 1.51999 * 112.64285 * 51.76328 * 20 19 14 22 22 C 1.51981 * 113.61832 * 312.47150 * 21 20 19 23 23 H 0.97004 * 119.99735 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47150 * 59.99958 * 9 7 2 25 25 H 1.09003 * 109.46851 * 299.99858 * 9 7 2 26 26 H 1.09000 * 109.47054 * 59.99980 * 10 9 7 27 27 H 1.08996 * 109.47258 * 300.00101 * 10 9 7 28 28 H 1.08997 * 109.47627 * 60.00470 * 11 10 9 29 29 H 1.09004 * 109.47492 * 299.99536 * 11 10 9 30 30 H 1.10136 * 109.21983 * 359.77910 * 15 14 12 31 31 H 1.09754 * 109.11162 * 289.68994 * 16 15 14 32 32 H 1.09797 * 109.02854 * 172.79201 * 16 15 14 33 33 H 1.08679 * 111.00654 * 79.68238 * 17 16 15 34 34 H 1.10948 * 107.46099 * 194.49759 * 17 16 15 35 35 H 1.09819 * 109.12057 * 167.75167 * 18 17 16 36 36 H 1.09755 * 109.22659 * 284.69499 * 18 17 16 37 37 H 1.10135 * 109.22836 * 0.03453 * 19 14 12 38 38 H 1.09733 * 109.10943 * 290.33734 * 20 19 14 39 39 H 1.09715 * 109.11087 * 173.25581 * 20 19 14 40 40 H 1.10837 * 107.58289 * 193.47250 * 21 20 19 41 41 H 1.08641 * 110.96242 * 78.39482 * 21 20 19 42 42 H 1.09742 * 109.17522 * 285.83991 * 22 21 20 43 43 H 1.09752 * 109.18068 * 168.75106 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4802 -4.9871 -0.0033 12 6 2.4596 -6.1325 -0.0037 13 8 3.6520 -5.9109 -0.0040 14 7 2.0109 -7.4016 -0.0037 15 6 2.9203 -8.5599 -0.0046 16 6 2.6644 -9.3793 1.2568 17 6 1.1960 -9.7162 1.4535 18 6 0.2611 -8.5351 1.2559 19 6 0.5755 -7.7308 -0.0022 20 6 0.2600 -8.5337 -1.2610 21 6 1.1865 -9.7249 -1.4428 22 6 2.6567 -9.3865 -1.2592 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5563 -0.8920 25 1 0.6240 -2.5575 0.8881 26 1 2.8719 -3.6051 0.8873 27 1 2.8719 -3.6036 -0.8926 28 1 0.8533 -5.0444 -0.8931 29 1 0.8539 -5.0454 0.8869 30 1 3.9621 -8.2029 -0.0092 31 1 3.0271 -8.8196 2.1285 32 1 3.2438 -10.3104 1.2024 33 1 0.9019 -10.5556 0.8289 34 1 1.0723 -10.0680 2.4984 35 1 -0.7728 -8.9006 1.1974 36 1 0.3236 -7.8744 2.1301 37 1 -0.0105 -6.7983 -0.0018 38 1 0.3416 -7.8766 -2.1361 39 1 -0.7775 -8.8869 -1.2112 40 1 1.0548 -10.0965 -2.4787 41 1 0.8925 -10.5479 -0.7973 42 1 3.0109 -8.8307 -2.1367 43 1 3.2367 -10.3166 -1.2048 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593985550.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:47 Heat of formation + Delta-G solvation = -70.633567 kcal Electronic energy + Delta-G solvation = -20870.157248 eV Core-core repulsion = 17913.535240 eV Total energy + Delta-G solvation = -2956.622008 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.80464 -38.10982 -34.24217 -33.22069 -33.14307 -32.61629 -31.81937 -27.93839 -26.39481 -25.78921 -23.80383 -22.08751 -21.19658 -20.92875 -19.63654 -17.67686 -16.97217 -16.20777 -15.49218 -15.36907 -15.30825 -14.42255 -14.29432 -14.02421 -13.87247 -13.68826 -13.50275 -13.38645 -13.07791 -12.22467 -11.99396 -11.83698 -11.64727 -11.62339 -11.29058 -11.22519 -11.17441 -10.79656 -10.73118 -10.48678 -10.43871 -10.36298 -10.04738 -9.63280 -9.54588 -9.19709 -8.95670 -8.45686 -8.29534 -5.95184 -3.96222 2.98837 3.09378 3.35506 3.42687 3.48815 4.33751 4.51506 4.54696 4.62343 4.66707 4.77830 4.94088 4.95646 5.02998 5.05950 5.20324 5.34476 5.41024 5.49049 5.61807 5.66937 5.71212 5.73431 5.75607 5.77689 5.80442 5.82982 5.88513 5.93784 6.00748 6.06205 6.31116 6.35061 6.64390 6.77567 6.98601 7.20523 7.65464 7.74931 7.87426 8.05991 8.50094 8.52323 9.11131 9.67667 11.16403 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.036437 B = 0.003805 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.275468 B = 7357.532003 C = 7554.347177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.136 4.136 12 C 0.521 3.479 13 O -0.541 6.541 14 N -0.611 5.611 15 C 0.141 3.859 16 C -0.122 4.122 17 C -0.112 4.112 18 C -0.124 4.124 19 C 0.138 3.862 20 C -0.125 4.125 21 C -0.113 4.113 22 C -0.122 4.122 23 H 0.259 0.741 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.052 0.948 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.138 -23.676 0.000 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.176 4.176 12 C 0.311 3.689 13 O -0.418 6.418 14 N -0.346 5.346 15 C 0.038 3.962 16 C -0.160 4.160 17 C -0.150 4.150 18 C -0.163 4.163 19 C 0.035 3.965 20 C -0.163 4.163 21 C -0.151 4.151 22 C -0.160 4.160 23 H 0.068 0.932 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.622 -23.398 0.000 23.406 hybrid contribution 0.261 0.845 0.001 0.885 sum -0.360 -22.552 0.001 22.555 Atomic orbital electron populations 1.69979 1.06026 1.26371 1.51414 1.25018 0.94849 0.99227 0.95430 0.86545 0.80260 0.83794 0.77498 1.19680 1.21057 1.21052 1.21318 0.93235 0.91015 1.49865 0.92537 1.19136 0.93975 0.91495 0.97070 1.21447 0.98614 0.91556 1.01639 1.21842 0.98209 0.94145 1.03379 1.21112 0.90145 0.83138 0.74538 1.90656 1.17352 1.84097 1.49665 1.48428 1.06683 1.05194 1.74268 1.21100 0.95510 0.85819 0.93820 1.21611 0.96501 1.00009 0.97915 1.21176 0.94459 0.97659 1.01679 1.21633 0.99364 0.97482 0.97798 1.21327 0.82014 0.98836 0.94365 1.21649 0.99418 0.97439 0.97805 1.21196 0.94479 0.97641 1.01740 1.21608 0.96518 0.99960 0.97954 0.93166 0.96644 0.96633 0.92759 0.92751 0.89569 0.89576 0.88468 0.91924 0.91358 0.91424 0.92994 0.91026 0.91659 0.88361 0.91649 0.90995 0.92955 0.91382 0.91927 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.09 -2.11 4.44 -26.73 -0.12 -2.23 16 11 C -0.14 -2.38 4.10 -27.88 -0.11 -2.49 16 12 C 0.52 8.99 7.75 -11.06 -0.09 8.90 16 13 O -0.54 -11.37 15.53 5.56 0.09 -11.28 16 14 N -0.61 -8.12 2.51 -157.52 -0.40 -8.52 16 15 C 0.14 1.64 3.22 -67.97 -0.22 1.42 16 16 C -0.12 -1.16 5.45 -27.49 -0.15 -1.31 16 17 C -0.11 -0.92 4.96 -27.82 -0.14 -1.06 16 18 C -0.12 -1.10 5.45 -27.49 -0.15 -1.25 16 19 C 0.14 1.44 3.15 -67.92 -0.21 1.23 16 20 C -0.12 -1.10 5.47 -27.44 -0.15 -1.25 16 21 C -0.11 -0.92 4.99 -27.76 -0.14 -1.06 16 22 C -0.12 -1.16 5.45 -27.48 -0.15 -1.31 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 27 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 28 H 0.09 1.38 7.88 -51.93 -0.41 0.97 16 29 H 0.09 1.38 7.88 -51.93 -0.41 0.97 16 30 H 0.10 1.34 7.19 -51.28 -0.37 0.97 16 31 H 0.06 0.68 8.20 -51.50 -0.42 0.25 16 32 H 0.07 0.53 8.21 -51.48 -0.42 0.11 16 33 H 0.07 0.48 5.65 -52.11 -0.29 0.18 16 34 H 0.05 0.39 8.29 -50.81 -0.42 -0.03 16 35 H 0.07 0.51 8.21 -51.46 -0.42 0.09 16 36 H 0.06 0.64 8.20 -51.50 -0.42 0.21 16 37 H 0.10 1.04 6.20 -51.28 -0.32 0.72 16 38 H 0.06 0.64 8.20 -51.51 -0.42 0.22 16 39 H 0.07 0.51 8.20 -51.52 -0.42 0.09 16 40 H 0.05 0.40 8.29 -50.87 -0.42 -0.03 16 41 H 0.07 0.48 5.59 -52.13 -0.29 0.19 16 42 H 0.06 0.68 8.20 -51.51 -0.42 0.25 16 43 H 0.07 0.53 8.20 -51.50 -0.42 0.11 16 LS Contribution 327.29 15.07 4.93 4.93 Total: -1.00 -33.02 327.29 -9.38 -42.40 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -7.54 Total: -4.20 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -2.18 Total: -13.96 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.34 Total: -35.10 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.02 -9.38 -42.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593985550.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.232 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds