Wall clock time and date at job start Mon Mar 30 2020 06:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00052 * 2 1 4 4 H 1.48496 * 109.47436 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46873 * 300.00196 * 3 2 1 6 6 H 1.48499 * 109.46878 * 59.99739 * 3 2 1 7 7 C 1.37874 * 119.99682 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99810 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00347 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47168 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46873 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.46759 * 180.02562 * 11 10 9 13 13 O 1.21281 * 120.00117 * 359.97438 * 12 11 10 14 14 N 1.34604 * 120.00001 * 179.97438 * 12 11 10 15 15 C 1.47261 * 122.39559 * 179.97438 * 14 12 11 16 16 C 1.52572 * 108.56443 * 119.29507 * 15 14 12 17 17 C 1.51936 * 112.84045 * 51.31685 * 16 15 14 18 18 C 1.51926 * 113.92268 * 313.44372 * 17 16 15 19 19 C 1.47268 * 122.38669 * 359.94884 * 14 12 11 20 20 C 1.52609 * 108.55607 * 119.52114 * 19 14 12 21 21 C 1.51999 * 112.64285 * 51.76328 * 20 19 14 22 22 C 1.51981 * 113.61832 * 312.47150 * 21 20 19 23 23 H 0.97004 * 119.99735 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47150 * 59.99958 * 9 7 2 25 25 H 1.09003 * 109.46851 * 299.99858 * 9 7 2 26 26 H 1.09000 * 109.47054 * 59.99980 * 10 9 7 27 27 H 1.08996 * 109.47258 * 300.00101 * 10 9 7 28 28 H 1.08997 * 109.47627 * 60.00470 * 11 10 9 29 29 H 1.09004 * 109.47492 * 299.99536 * 11 10 9 30 30 H 1.10136 * 109.21983 * 359.77910 * 15 14 12 31 31 H 1.09754 * 109.11162 * 289.68994 * 16 15 14 32 32 H 1.09797 * 109.02854 * 172.79201 * 16 15 14 33 33 H 1.08679 * 111.00654 * 79.68238 * 17 16 15 34 34 H 1.10948 * 107.46099 * 194.49759 * 17 16 15 35 35 H 1.09819 * 109.12057 * 167.75167 * 18 17 16 36 36 H 1.09755 * 109.22659 * 284.69499 * 18 17 16 37 37 H 1.10135 * 109.22836 * 0.03453 * 19 14 12 38 38 H 1.09733 * 109.10943 * 290.33734 * 20 19 14 39 39 H 1.09715 * 109.11087 * 173.25581 * 20 19 14 40 40 H 1.10837 * 107.58289 * 193.47250 * 21 20 19 41 41 H 1.08641 * 110.96242 * 78.39482 * 21 20 19 42 42 H 1.09742 * 109.17522 * 285.83991 * 22 21 20 43 43 H 1.09752 * 109.18068 * 168.75106 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0027 11 6 1.4802 -4.9871 -0.0033 12 6 2.4596 -6.1325 -0.0037 13 8 3.6520 -5.9109 -0.0040 14 7 2.0109 -7.4016 -0.0037 15 6 2.9203 -8.5599 -0.0046 16 6 2.6644 -9.3793 1.2568 17 6 1.1960 -9.7162 1.4535 18 6 0.2611 -8.5351 1.2559 19 6 0.5755 -7.7308 -0.0022 20 6 0.2600 -8.5337 -1.2610 21 6 1.1865 -9.7249 -1.4428 22 6 2.6567 -9.3865 -1.2592 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5563 -0.8920 25 1 0.6240 -2.5575 0.8881 26 1 2.8719 -3.6051 0.8873 27 1 2.8719 -3.6036 -0.8926 28 1 0.8533 -5.0444 -0.8931 29 1 0.8539 -5.0454 0.8869 30 1 3.9621 -8.2029 -0.0092 31 1 3.0271 -8.8196 2.1285 32 1 3.2438 -10.3104 1.2024 33 1 0.9019 -10.5556 0.8289 34 1 1.0723 -10.0680 2.4984 35 1 -0.7728 -8.9006 1.1974 36 1 0.3236 -7.8744 2.1301 37 1 -0.0105 -6.7983 -0.0018 38 1 0.3416 -7.8766 -2.1361 39 1 -0.7775 -8.8869 -1.2112 40 1 1.0548 -10.0965 -2.4787 41 1 0.8925 -10.5479 -0.7973 42 1 3.0109 -8.8307 -2.1367 43 1 3.2367 -10.3166 -1.2048 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593985550.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:46 Heat of formation + Delta-G solvation = -89.357723 kcal Electronic energy + Delta-G solvation = -20870.969188 eV Core-core repulsion = 17913.535240 eV Total energy + Delta-G solvation = -2957.433948 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.81298 -39.36133 -36.17604 -34.46583 -33.81681 -33.70149 -33.51417 -29.77770 -27.11447 -26.91404 -25.58166 -23.06886 -22.49455 -21.87937 -21.14389 -18.83675 -18.33978 -17.95891 -16.77254 -16.65256 -16.43499 -16.19173 -15.39657 -14.99557 -14.81078 -14.61128 -14.54794 -14.42018 -14.17040 -14.13814 -13.74436 -13.16373 -12.70129 -12.69412 -12.58906 -12.54185 -12.35320 -12.27308 -11.96924 -11.86876 -11.60023 -11.49591 -11.45756 -11.23257 -11.15994 -10.74495 -10.61633 -10.55614 -9.50113 -8.21211 -6.31277 1.38855 1.38935 1.53120 1.63085 1.99773 2.41167 3.11634 3.49498 3.68000 3.89693 3.95950 3.99864 4.00657 4.13447 4.16665 4.20580 4.29277 4.36732 4.38384 4.51425 4.67312 4.79584 4.91465 4.96342 4.96668 5.03544 5.05312 5.06986 5.09623 5.14780 5.15389 5.16846 5.23907 5.25623 5.35954 5.51753 5.67362 5.69342 5.72606 5.84502 6.26090 6.48881 6.83544 7.20515 7.37429 8.90616 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.036437 B = 0.003805 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.275468 B = 7357.532003 C = 7554.347177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.028 3.972 10 C -0.081 4.081 11 C -0.125 4.125 12 C 0.516 3.484 13 O -0.591 6.591 14 N -0.602 5.602 15 C 0.134 3.866 16 C -0.118 4.118 17 C -0.111 4.111 18 C -0.124 4.124 19 C 0.128 3.872 20 C -0.124 4.124 21 C -0.112 4.112 22 C -0.118 4.118 23 H 0.265 0.735 24 H 0.001 0.999 25 H 0.001 0.999 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.050 0.950 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.042 0.958 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.252 -25.528 0.002 25.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.586 4.586 8 H 0.068 0.932 9 C -0.009 4.009 10 C -0.119 4.119 11 C -0.165 4.165 12 C 0.306 3.694 13 O -0.472 6.472 14 N -0.335 5.335 15 C 0.031 3.969 16 C -0.156 4.156 17 C -0.149 4.149 18 C -0.162 4.162 19 C 0.025 3.975 20 C -0.162 4.162 21 C -0.149 4.149 22 C -0.156 4.156 23 H 0.074 0.926 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.069 0.931 39 H 0.117 0.883 40 H 0.082 0.918 41 H 0.108 0.892 42 H 0.060 0.940 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.773 -25.300 0.003 25.362 hybrid contribution 0.578 1.379 0.000 1.495 sum -1.195 -23.922 0.003 23.951 Atomic orbital electron populations 1.70076 1.07472 1.27753 1.51564 1.25898 0.95838 1.03029 0.94593 0.85439 0.78829 0.78939 0.78097 1.19344 1.19945 1.19934 1.21697 0.93286 0.92800 1.50799 0.93209 1.19006 0.94110 0.92292 0.95523 1.21157 0.97635 0.92990 1.00094 1.21650 0.97933 0.91924 1.04994 1.20957 0.89200 0.84496 0.74705 1.90631 1.19034 1.85039 1.52483 1.48474 1.08695 1.04323 1.71999 1.21293 0.93596 0.85603 0.96404 1.21598 0.98292 1.00172 0.95577 1.21184 0.92813 0.97872 1.02997 1.21654 1.01163 0.97342 0.96011 1.21676 0.79743 0.99553 0.96479 1.21669 1.01222 0.97296 0.95997 1.21203 0.92824 0.97800 1.03100 1.21594 0.98315 1.00112 0.95618 0.92614 0.98043 0.98031 0.94293 0.94284 0.87915 0.87922 0.91657 0.93981 0.89072 0.89204 0.91869 0.88274 0.93060 0.88769 0.93083 0.88260 0.91792 0.89199 0.93960 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.96 45.84 29.54 68.60 2.03 47.87 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.55 -33.00 9.11 25.60 0.23 -32.77 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 9 C 0.03 1.52 4.97 29.85 0.15 1.67 16 10 C -0.08 -3.76 4.44 30.59 0.14 -3.63 16 11 C -0.13 -4.48 4.10 29.85 0.12 -4.36 16 12 C 0.52 18.47 7.75 87.69 0.68 19.15 16 13 O -0.59 -26.26 15.53 -3.03 -0.05 -26.31 16 14 N -0.60 -15.96 2.51 -770.77 -1.93 -17.90 16 15 C 0.13 3.07 3.22 44.55 0.14 3.21 16 16 C -0.12 -2.05 5.45 30.10 0.16 -1.89 16 17 C -0.11 -1.44 4.96 29.89 0.15 -1.30 16 18 C -0.12 -1.84 5.45 30.10 0.16 -1.67 16 19 C 0.13 2.44 3.15 44.58 0.14 2.58 16 20 C -0.12 -1.84 5.47 30.13 0.16 -1.68 16 21 C -0.11 -1.45 4.99 29.93 0.15 -1.30 16 22 C -0.12 -2.05 5.45 30.11 0.16 -1.88 16 23 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 24 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 25 H 0.00 0.07 8.14 -2.39 -0.02 0.06 16 26 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 27 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 28 H 0.10 3.31 7.88 -2.39 -0.02 3.29 16 29 H 0.10 3.31 7.88 -2.39 -0.02 3.29 16 30 H 0.07 1.90 7.19 -1.78 -0.01 1.89 16 31 H 0.04 0.89 8.20 -1.98 -0.02 0.88 16 32 H 0.09 1.18 8.21 -1.96 -0.02 1.16 16 33 H 0.09 0.81 5.65 -2.56 -0.01 0.79 16 34 H 0.06 0.73 8.29 -1.33 -0.01 0.72 16 35 H 0.10 0.99 8.21 -1.95 -0.02 0.97 16 36 H 0.05 0.91 8.20 -1.98 -0.02 0.90 16 37 H 0.09 1.86 6.20 -1.78 -0.01 1.85 16 38 H 0.05 0.91 8.20 -2.00 -0.02 0.90 16 39 H 0.10 0.99 8.20 -2.01 -0.02 0.98 16 40 H 0.06 0.74 8.29 -1.40 -0.01 0.72 16 41 H 0.09 0.81 5.59 -2.58 -0.01 0.80 16 42 H 0.04 0.90 8.20 -1.99 -0.02 0.88 16 43 H 0.09 1.18 8.20 -1.99 -0.02 1.16 16 Total: -1.00 -73.65 327.29 4.36 -69.29 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 1.01 Total: 6.81 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 3.02 Total: -23.15 kcal Atomic # 7 Polarization: -72.87 SS G_CDS: -1.65 Total: -74.52 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.05 Total: -26.31 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -73.65 4.36 -69.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593985550.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.067 kcal (2) G-P(sol) polarization free energy of solvation -73.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds