Wall clock time and date at job start Mon Mar 30 2020 07:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99896 * 2 1 4 4 H 1.48495 * 109.47128 * 270.00303 * 3 2 1 5 5 H 1.48500 * 109.47355 * 30.00528 * 3 2 1 6 6 H 1.48497 * 109.47043 * 150.00527 * 3 2 1 7 7 C 1.37876 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99754 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99776 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46941 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47505 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47766 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99586 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00535 * 180.02562 * 12 11 10 15 15 C 1.47961 * 122.26637 * 355.55386 * 14 12 11 16 16 C 1.52701 * 110.95388 * 231.64281 * 15 14 12 17 17 C 1.53831 * 111.68560 * 311.62162 * 16 15 14 18 18 C 1.51540 * 107.20637 * 57.54647 * 17 16 15 19 19 H 1.09002 * 110.18631 * 54.29860 * 18 17 16 20 20 C 1.53010 * 116.91493 * 181.13077 * 18 17 16 21 21 C 1.55463 * 102.74715 * 157.85243 * 20 18 17 22 22 C 1.55054 * 106.32584 * 335.96475 * 21 20 18 23 23 C 1.45193 * 122.20721 * 175.49965 * 14 12 11 24 24 H 1.09001 * 109.52794 * 238.18294 * 23 14 12 25 25 H 0.97006 * 120.00078 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47677 * 59.99717 * 9 7 2 27 27 H 1.09008 * 109.46845 * 299.99522 * 9 7 2 28 28 H 1.09001 * 109.47139 * 59.99966 * 10 9 7 29 29 H 1.08994 * 109.47138 * 299.99644 * 10 9 7 30 30 H 1.09001 * 109.46999 * 59.99796 * 11 10 9 31 31 H 1.09003 * 109.47327 * 300.00223 * 11 10 9 32 32 H 1.09002 * 109.17636 * 111.27614 * 15 14 12 33 33 H 1.09009 * 109.17251 * 352.00526 * 15 14 12 34 34 H 1.09005 * 109.03941 * 72.18341 * 16 15 14 35 35 H 1.08994 * 109.04328 * 191.12403 * 16 15 14 36 36 H 1.09004 * 109.90856 * 176.96770 * 17 16 15 37 37 H 1.08998 * 109.90762 * 298.04278 * 17 16 15 38 38 H 1.08998 * 110.75433 * 276.17013 * 20 18 17 39 39 H 1.09001 * 110.75407 * 39.53855 * 20 18 17 40 40 H 1.08998 * 110.08676 * 95.18594 * 21 20 18 41 41 H 1.09006 * 110.08351 * 216.69243 * 21 20 18 42 42 H 1.09007 * 110.29797 * 114.96743 * 22 21 20 43 43 H 1.08993 * 110.30400 * 237.11014 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0027 11 6 1.4803 -4.9871 -0.0033 12 6 2.4595 -6.1326 -0.0049 13 8 3.6519 -5.9109 -0.0061 14 7 2.0103 -7.4032 -0.0062 15 6 0.5711 -7.7323 0.0910 16 6 0.3167 -8.7464 1.2040 17 6 1.2860 -9.9379 1.1198 18 6 2.6923 -9.3775 1.1887 19 1 2.8061 -8.7550 2.0762 20 6 3.8433 -10.3814 1.0960 21 6 5.0314 -9.4983 0.6214 22 6 4.4055 -8.2758 -0.0983 23 6 2.9071 -8.5409 -0.1042 24 1 2.6431 -9.1388 -0.9766 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 0.6240 -2.5574 0.8881 28 1 2.8719 -3.6051 0.8873 29 1 2.8718 -3.6036 -0.8927 30 1 0.8533 -5.0443 -0.8931 31 1 0.8539 -5.0454 0.8869 32 1 0.2345 -8.1502 -0.8578 33 1 0.0091 -6.8221 0.3007 34 1 0.4413 -8.2543 2.1686 35 1 -0.7058 -9.1148 1.1225 36 1 1.1150 -10.6153 1.9565 37 1 1.1420 -10.4676 0.1781 38 1 4.0532 -10.8195 2.0717 39 1 3.6213 -11.1569 0.3628 40 1 5.6182 -9.1681 1.4785 41 1 5.6614 -10.0584 -0.0697 42 1 4.6254 -7.3602 0.4510 43 1 4.7810 -8.2046 -1.1190 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593986253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:40 Heat of formation + Delta-G solvation = -61.112516 kcal Electronic energy + Delta-G solvation = -20612.634903 eV Core-core repulsion = 17656.425759 eV Total energy + Delta-G solvation = -2956.209144 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.72828 -38.13754 -35.54490 -34.16168 -32.92776 -31.99103 -29.08928 -28.67266 -27.20433 -25.09716 -23.57283 -21.83978 -21.31342 -20.30399 -19.92864 -18.70990 -16.49679 -16.10095 -16.02335 -15.56208 -15.11645 -14.80686 -14.39367 -14.11117 -13.93028 -13.58908 -13.40499 -12.94496 -12.74141 -12.23495 -12.17484 -11.77884 -11.51895 -11.40833 -11.29085 -11.05735 -10.93313 -10.80162 -10.75367 -10.73696 -10.57140 -10.51935 -10.44072 -9.64246 -9.36797 -9.09980 -8.79342 -8.46362 -8.30059 -5.95865 -3.97093 2.92606 3.06642 3.36148 3.41838 3.46841 4.24476 4.46661 4.51168 4.55078 4.74410 4.93525 4.96665 5.03123 5.19329 5.24903 5.31698 5.40196 5.40484 5.49323 5.54630 5.62534 5.66968 5.73034 5.74057 5.75314 5.80243 5.89130 5.91299 5.99582 6.20548 6.26458 6.29627 6.37585 6.76045 6.85074 6.97850 7.19128 7.59142 7.73435 7.86260 8.05070 8.49025 8.50810 9.10021 9.66771 11.15658 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.034300 B = 0.003734 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.124899 B = 7497.162780 C = 8122.585761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.139 4.139 12 C 0.521 3.479 13 O -0.531 6.531 14 N -0.614 5.614 15 C 0.110 3.890 16 C -0.135 4.135 17 C -0.108 4.108 18 C -0.113 4.113 19 H 0.078 0.922 20 C -0.115 4.115 21 C -0.124 4.124 22 C -0.137 4.137 23 C 0.140 3.860 24 H 0.066 0.934 25 H 0.259 0.741 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.115 0.885 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.343 -23.347 1.559 23.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.132 4.132 11 C -0.178 4.178 12 C 0.311 3.689 13 O -0.408 6.408 14 N -0.348 5.348 15 C -0.013 4.013 16 C -0.173 4.173 17 C -0.145 4.145 18 C -0.132 4.132 19 H 0.097 0.903 20 C -0.153 4.153 21 C -0.162 4.162 22 C -0.175 4.175 23 C 0.036 3.964 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.133 0.867 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.834 -23.053 1.548 23.178 hybrid contribution 0.205 0.817 -0.054 0.844 sum 2.040 -22.236 1.494 22.379 Atomic orbital electron populations 1.69965 1.06033 1.26502 1.51284 1.25018 0.94853 0.99232 0.95412 0.86595 0.79910 0.83437 0.78096 1.20687 1.21275 1.19833 1.21277 0.93190 0.91025 1.50048 0.92589 1.19131 0.93974 0.91492 0.97058 1.21442 0.98613 0.91540 1.01635 1.21884 0.98281 0.94265 1.03402 1.21196 0.90144 0.83140 0.74407 1.90543 1.16981 1.83877 1.49365 1.47955 1.07126 1.05457 1.74284 1.21722 0.80991 0.99814 0.98791 1.21919 0.99699 0.96215 0.99477 1.21365 0.94029 0.97134 1.01984 1.22208 0.94288 0.97704 0.99046 0.90332 1.22114 0.94900 0.97229 1.01099 1.22585 0.97390 0.96155 1.00039 1.22491 0.92369 1.00554 1.02063 1.21457 0.91659 0.86464 0.96849 0.91555 0.93096 0.96662 0.96653 0.92751 0.92722 0.89515 0.89591 0.91651 0.89149 0.91459 0.90584 0.91670 0.91701 0.91625 0.91558 0.91769 0.92076 0.86696 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.09 -2.07 4.44 -26.73 -0.12 -2.19 16 11 C -0.14 -2.37 4.19 -27.89 -0.12 -2.48 16 12 C 0.52 8.70 7.73 -10.99 -0.08 8.62 16 13 O -0.53 -10.49 12.64 5.55 0.07 -10.42 16 14 N -0.61 -8.06 2.92 -165.03 -0.48 -8.54 16 15 C 0.11 1.08 6.32 -3.39 -0.02 1.06 16 16 C -0.13 -1.10 5.95 -26.45 -0.16 -1.26 16 17 C -0.11 -0.86 5.70 -27.04 -0.15 -1.01 16 18 C -0.11 -1.12 2.44 -90.03 -0.22 -1.34 16 19 H 0.08 0.92 8.13 -51.93 -0.42 0.49 16 20 C -0.12 -1.00 6.50 -25.42 -0.17 -1.17 16 21 C -0.12 -1.24 6.88 -24.34 -0.17 -1.41 16 22 C -0.14 -1.78 5.55 -26.07 -0.14 -1.93 16 23 C 0.14 1.67 2.87 -67.73 -0.19 1.48 16 24 H 0.07 0.74 8.00 -51.93 -0.42 0.32 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 29 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 30 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.09 1.34 7.57 -51.93 -0.39 0.95 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.88 6.21 -51.92 -0.32 0.56 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.48 8.01 -51.93 -0.42 0.07 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.12 1.86 5.31 -51.95 -0.28 1.59 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 331.00 15.07 4.99 4.99 Total: -1.00 -32.15 331.00 -9.50 -41.66 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -7.70 Total: -3.18 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -2.09 Total: -15.13 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.25 Total: -35.06 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.07 Total: -10.42 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.15 -9.50 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593986253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.456 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds