Wall clock time and date at job start Mon Mar 30 2020 07:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99896 * 2 1 4 4 H 1.48495 * 109.47128 * 270.00303 * 3 2 1 5 5 H 1.48500 * 109.47355 * 30.00528 * 3 2 1 6 6 H 1.48497 * 109.47043 * 150.00527 * 3 2 1 7 7 C 1.37876 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99754 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99776 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46941 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47505 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47766 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99586 * 359.97438 * 12 11 10 14 14 N 1.34771 * 120.00535 * 180.02562 * 12 11 10 15 15 C 1.47961 * 122.26637 * 355.55386 * 14 12 11 16 16 C 1.52701 * 110.95388 * 231.64281 * 15 14 12 17 17 C 1.53831 * 111.68560 * 311.62162 * 16 15 14 18 18 C 1.51540 * 107.20637 * 57.54647 * 17 16 15 19 19 H 1.09002 * 110.18631 * 54.29860 * 18 17 16 20 20 C 1.53010 * 116.91493 * 181.13077 * 18 17 16 21 21 C 1.55463 * 102.74715 * 157.85243 * 20 18 17 22 22 C 1.55054 * 106.32584 * 335.96475 * 21 20 18 23 23 C 1.45193 * 122.20721 * 175.49965 * 14 12 11 24 24 H 1.09001 * 109.52794 * 238.18294 * 23 14 12 25 25 H 0.97006 * 120.00078 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47677 * 59.99717 * 9 7 2 27 27 H 1.09008 * 109.46845 * 299.99522 * 9 7 2 28 28 H 1.09001 * 109.47139 * 59.99966 * 10 9 7 29 29 H 1.08994 * 109.47138 * 299.99644 * 10 9 7 30 30 H 1.09001 * 109.46999 * 59.99796 * 11 10 9 31 31 H 1.09003 * 109.47327 * 300.00223 * 11 10 9 32 32 H 1.09002 * 109.17636 * 111.27614 * 15 14 12 33 33 H 1.09009 * 109.17251 * 352.00526 * 15 14 12 34 34 H 1.09005 * 109.03941 * 72.18341 * 16 15 14 35 35 H 1.08994 * 109.04328 * 191.12403 * 16 15 14 36 36 H 1.09004 * 109.90856 * 176.96770 * 17 16 15 37 37 H 1.08998 * 109.90762 * 298.04278 * 17 16 15 38 38 H 1.08998 * 110.75433 * 276.17013 * 20 18 17 39 39 H 1.09001 * 110.75407 * 39.53855 * 20 18 17 40 40 H 1.08998 * 110.08676 * 95.18594 * 21 20 18 41 41 H 1.09006 * 110.08351 * 216.69243 * 21 20 18 42 42 H 1.09007 * 110.29797 * 114.96743 * 22 21 20 43 43 H 1.08993 * 110.30400 * 237.11014 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0027 11 6 1.4803 -4.9871 -0.0033 12 6 2.4595 -6.1326 -0.0049 13 8 3.6519 -5.9109 -0.0061 14 7 2.0103 -7.4032 -0.0062 15 6 0.5711 -7.7323 0.0910 16 6 0.3167 -8.7464 1.2040 17 6 1.2860 -9.9379 1.1198 18 6 2.6923 -9.3775 1.1887 19 1 2.8061 -8.7550 2.0762 20 6 3.8433 -10.3814 1.0960 21 6 5.0314 -9.4983 0.6214 22 6 4.4055 -8.2758 -0.0983 23 6 2.9071 -8.5409 -0.1042 24 1 2.6431 -9.1388 -0.9766 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5563 -0.8919 27 1 0.6240 -2.5574 0.8881 28 1 2.8719 -3.6051 0.8873 29 1 2.8718 -3.6036 -0.8927 30 1 0.8533 -5.0443 -0.8931 31 1 0.8539 -5.0454 0.8869 32 1 0.2345 -8.1502 -0.8578 33 1 0.0091 -6.8221 0.3007 34 1 0.4413 -8.2543 2.1686 35 1 -0.7058 -9.1148 1.1225 36 1 1.1150 -10.6153 1.9565 37 1 1.1420 -10.4676 0.1781 38 1 4.0532 -10.8195 2.0717 39 1 3.6213 -11.1569 0.3628 40 1 5.6182 -9.1681 1.4785 41 1 5.6614 -10.0584 -0.0697 42 1 4.6254 -7.3602 0.4510 43 1 4.7810 -8.2046 -1.1190 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593986253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:39 Heat of formation + Delta-G solvation = -78.887574 kcal Electronic energy + Delta-G solvation = -20613.405687 eV Core-core repulsion = 17656.425759 eV Total energy + Delta-G solvation = -2956.979929 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.75937 -39.29158 -36.47848 -36.09397 -34.00489 -33.82859 -30.28818 -29.78634 -28.52170 -26.32694 -25.20233 -22.68839 -22.58834 -21.50316 -21.06681 -19.93756 -18.44953 -17.37826 -17.16261 -16.84224 -16.48216 -15.96838 -15.73020 -15.24555 -15.03905 -14.52015 -14.36505 -14.33849 -14.12367 -13.75742 -13.61338 -13.13192 -12.93726 -12.64551 -12.54211 -12.49278 -12.29247 -12.15962 -11.81928 -11.74452 -11.60608 -11.57332 -11.44797 -11.43229 -11.27989 -11.20619 -10.55154 -10.12248 -9.49310 -8.20980 -6.31081 1.38921 1.40150 1.51748 1.63381 2.01604 2.41133 3.11847 3.36427 3.62284 3.77658 3.89326 4.04054 4.16824 4.17745 4.23192 4.30460 4.41609 4.42418 4.44708 4.60536 4.64526 4.70935 4.85019 4.90568 4.94241 4.98399 5.06066 5.07680 5.10222 5.14880 5.17147 5.20150 5.29070 5.34622 5.39776 5.52522 5.53681 5.73716 5.84475 5.85167 6.26207 6.46531 6.83891 7.25075 7.37580 8.90591 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.034300 B = 0.003734 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.124899 B = 7497.162780 C = 8122.585761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.027 3.973 10 C -0.080 4.080 11 C -0.129 4.129 12 C 0.516 3.484 13 O -0.572 6.572 14 N -0.607 5.607 15 C 0.100 3.900 16 C -0.132 4.132 17 C -0.103 4.103 18 C -0.105 4.105 19 H 0.055 0.945 20 C -0.108 4.108 21 C -0.120 4.120 22 C -0.141 4.141 23 C 0.129 3.871 24 H 0.083 0.917 25 H 0.265 0.735 26 H 0.001 0.999 27 H 0.001 0.999 28 H 0.038 0.962 29 H 0.039 0.961 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.623 -25.161 1.557 25.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.068 0.932 9 C -0.010 4.010 10 C -0.118 4.118 11 C -0.168 4.168 12 C 0.306 3.694 13 O -0.453 6.453 14 N -0.339 5.339 15 C -0.022 4.022 16 C -0.170 4.170 17 C -0.141 4.141 18 C -0.125 4.125 19 H 0.074 0.926 20 C -0.145 4.145 21 C -0.159 4.159 22 C -0.178 4.178 23 C 0.026 3.974 24 H 0.101 0.899 25 H 0.074 0.926 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.120 0.880 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.083 -24.911 1.550 24.983 hybrid contribution 0.412 1.363 -0.066 1.425 sum 1.495 -23.548 1.484 23.642 Atomic orbital electron populations 1.70067 1.07484 1.27810 1.51526 1.25903 0.95838 1.03047 0.94627 0.85495 0.78621 0.78669 0.78570 1.19679 1.20187 1.19330 1.21680 0.93304 0.92819 1.50833 0.93154 1.19008 0.94152 0.92356 0.95463 1.21144 0.97592 0.92950 1.00129 1.21697 0.98054 0.92044 1.05021 1.21028 0.89308 0.84341 0.74693 1.90557 1.18353 1.84754 1.51587 1.48000 1.09022 1.04498 1.72420 1.22056 0.78705 1.00687 1.00719 1.21920 1.01293 0.95757 0.97998 1.21378 0.92100 0.97158 1.03424 1.22167 0.96301 0.97382 0.96633 0.92639 1.22112 0.93242 0.96898 1.02273 1.22559 0.98148 0.95314 0.99830 1.22395 0.93934 1.00384 1.01137 1.21681 0.90694 0.86250 0.98815 0.89895 0.92624 0.98112 0.98106 0.94265 0.94193 0.87861 0.87962 0.89589 0.89150 0.92585 0.87976 0.90124 0.90242 0.90390 0.89677 0.92379 0.90686 0.90375 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.96 45.67 29.54 68.60 2.03 47.70 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.55 -32.82 9.11 25.60 0.23 -32.58 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 9 C 0.03 1.48 4.97 29.85 0.15 1.63 16 10 C -0.08 -3.65 4.44 30.59 0.14 -3.51 16 11 C -0.13 -4.43 4.19 29.85 0.12 -4.31 16 12 C 0.52 17.58 7.73 87.66 0.68 18.26 16 13 O -0.57 -23.79 12.64 -3.04 -0.04 -23.82 16 14 N -0.61 -15.46 2.92 -794.43 -2.32 -17.78 16 15 C 0.10 1.74 6.32 86.00 0.54 2.28 16 16 C -0.13 -1.76 5.95 30.78 0.18 -1.58 16 17 C -0.10 -1.29 5.70 30.40 0.17 -1.11 16 18 C -0.11 -1.88 2.44 -10.41 -0.03 -1.91 16 19 H 0.06 1.25 8.13 -2.39 -0.02 1.24 16 20 C -0.11 -1.59 6.50 31.45 0.20 -1.38 16 21 C -0.12 -2.32 6.88 32.15 0.22 -2.09 16 22 C -0.14 -3.73 5.55 31.02 0.17 -3.55 16 23 C 0.13 2.94 2.87 45.82 0.13 3.07 16 24 H 0.08 1.65 8.00 -2.39 -0.02 1.63 16 25 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 26 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 27 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 28 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 29 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 30 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 31 H 0.10 3.17 7.57 -2.39 -0.02 3.15 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.58 6.21 -2.38 -0.01 1.57 16 34 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.08 0.82 8.01 -2.39 -0.02 0.80 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.08 2.71 5.31 -2.71 -0.01 2.69 16 43 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -71.44 331.00 4.29 -67.15 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 0.95 Total: 9.40 kcal Atomic # 6 Polarization: -29.49 SS G_CDS: 3.39 Total: -26.11 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -2.03 Total: -74.31 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.04 Total: -23.82 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -71.44 4.29 -67.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593986253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.739 kcal (2) G-P(sol) polarization free energy of solvation -71.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds