Wall clock time and date at job start Mon Mar 30 2020 07:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00408 * 2 1 4 4 H 1.48498 * 109.47263 * 240.00479 * 3 2 1 5 5 H 1.48500 * 109.46885 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47327 * 120.00046 * 3 2 1 7 7 C 1.37879 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00119 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00205 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47446 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47608 * 180.02562 * 10 9 7 12 12 C 1.50694 * 109.47587 * 179.97438 * 11 10 9 13 13 O 1.21281 * 119.99875 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00132 * 179.97438 * 12 11 10 15 15 C 1.47911 * 122.26882 * 359.97438 * 14 12 11 16 16 C 1.52702 * 111.05105 * 127.93577 * 15 14 12 17 17 C 1.53899 * 111.15559 * 48.74638 * 16 15 14 18 18 C 1.51331 * 107.20043 * 301.92036 * 17 16 15 19 19 H 1.09002 * 109.59976 * 308.36667 * 18 17 16 20 20 C 1.52210 * 117.80226 * 182.19202 * 18 17 16 21 21 C 1.55064 * 105.12699 * 212.77956 * 20 18 17 22 22 C 1.55464 * 106.32050 * 3.91662 * 21 20 18 23 23 C 1.45519 * 122.26681 * 180.02562 * 14 12 11 24 24 H 1.08995 * 110.93363 * 120.48240 * 23 14 12 25 25 H 0.96995 * 119.99898 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46815 * 60.00250 * 9 7 2 27 27 H 1.08999 * 109.47245 * 300.00832 * 9 7 2 28 28 H 1.09003 * 109.46962 * 60.00276 * 10 9 7 29 29 H 1.08999 * 109.47525 * 300.00596 * 10 9 7 30 30 H 1.09003 * 109.46825 * 60.00081 * 11 10 9 31 31 H 1.08999 * 109.47073 * 300.00762 * 11 10 9 32 32 H 1.09001 * 109.16146 * 248.33939 * 15 14 12 33 33 H 1.08997 * 109.16318 * 7.58222 * 15 14 12 34 34 H 1.09005 * 109.04171 * 168.96420 * 16 15 14 35 35 H 1.09001 * 109.04857 * 287.91701 * 16 15 14 36 36 H 1.09004 * 108.94617 * 183.03948 * 17 16 15 37 37 H 1.08996 * 110.88659 * 61.89158 * 17 16 15 38 38 H 1.09006 * 110.31022 * 331.69363 * 20 18 17 39 39 H 1.09007 * 110.31019 * 93.86404 * 20 18 17 40 40 H 1.08996 * 110.08616 * 123.13481 * 21 20 18 41 41 H 1.09005 * 110.08098 * 244.65008 * 21 20 18 42 42 H 1.08997 * 110.74637 * 142.41424 * 22 21 20 43 43 H 1.09003 * 110.75093 * 265.58194 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9872 -0.0012 12 6 2.4593 -6.1326 -0.0018 13 8 3.6517 -5.9110 -0.0013 14 7 2.0100 -7.4033 -0.0019 15 6 0.5676 -7.7309 -0.0009 16 6 0.2259 -8.7063 -1.1249 17 6 1.1980 -9.8994 -1.1398 18 6 2.5936 -9.3374 -1.3027 19 1 2.6180 -8.6610 -2.1571 20 6 3.7492 -10.3235 -1.3990 21 6 4.9502 -9.6060 -0.7302 22 6 4.4032 -8.2585 -0.1806 23 6 2.9111 -8.5460 -0.0020 24 1 2.7468 -9.1716 0.8753 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6245 -2.5571 0.8896 28 1 2.8717 -3.6044 0.8895 29 1 2.8719 -3.6044 -0.8904 30 1 0.8538 -5.0446 -0.8914 31 1 0.8531 -5.0451 0.8885 32 1 0.3037 -8.1811 0.9561 33 1 -0.0074 -6.8149 -0.1359 34 1 -0.7888 -9.0766 -0.9783 35 1 0.2784 -8.1821 -2.0791 36 1 0.9559 -10.5427 -1.9858 37 1 1.1322 -10.4658 -0.2109 38 1 3.5094 -11.2410 -0.8616 39 1 3.9731 -10.5431 -2.4430 40 1 5.3409 -10.2125 0.0867 41 1 5.7327 -9.4209 -1.4662 42 1 4.8662 -8.0152 0.7756 43 1 4.5614 -7.4552 -0.9002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593986254.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:44 Heat of formation + Delta-G solvation = -64.791744 kcal Electronic energy + Delta-G solvation = -20612.496832 eV Core-core repulsion = 17656.128145 eV Total energy + Delta-G solvation = -2956.368687 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.70031 -38.13755 -35.52975 -34.15416 -32.91560 -31.98432 -29.09342 -28.65932 -27.22202 -25.06454 -23.57365 -21.82809 -21.44504 -20.04351 -19.98226 -18.72062 -16.41977 -16.24457 -15.91766 -15.59160 -15.17738 -14.71674 -14.39834 -14.13119 -13.92361 -13.56388 -13.45702 -12.90551 -12.72201 -12.21909 -12.18915 -11.77058 -11.49198 -11.41767 -11.27499 -11.10073 -10.90971 -10.79568 -10.76498 -10.64809 -10.54846 -10.53936 -10.44252 -9.63589 -9.40862 -9.14619 -8.90482 -8.45599 -8.29510 -5.95494 -3.96787 2.95776 3.07368 3.38156 3.41364 3.45386 4.22499 4.47297 4.51281 4.55128 4.75793 4.91962 4.98263 5.02054 5.17571 5.22730 5.30453 5.40482 5.42551 5.47647 5.54367 5.62275 5.66744 5.73264 5.73733 5.75413 5.80218 5.89415 5.91723 5.98006 6.21389 6.25862 6.30163 6.36629 6.75496 6.76566 6.97555 7.19456 7.59864 7.73536 7.86621 8.05396 8.49304 8.51332 9.10093 9.66966 11.16044 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.034129 B = 0.003738 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.231345 B = 7489.706668 C = 8107.368252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.094 4.094 11 C -0.138 4.138 12 C 0.519 3.481 13 O -0.532 6.532 14 N -0.614 5.614 15 C 0.108 3.892 16 C -0.134 4.134 17 C -0.107 4.107 18 C -0.114 4.114 19 H 0.075 0.925 20 C -0.113 4.113 21 C -0.128 4.128 22 C -0.111 4.111 23 C 0.136 3.864 24 H 0.073 0.927 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.239 -23.445 -1.642 23.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.132 4.132 11 C -0.177 4.177 12 C 0.309 3.691 13 O -0.408 6.408 14 N -0.349 5.349 15 C -0.015 4.015 16 C -0.173 4.173 17 C -0.144 4.144 18 C -0.133 4.133 19 H 0.093 0.907 20 C -0.151 4.151 21 C -0.166 4.166 22 C -0.149 4.149 23 C 0.032 3.968 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.731 -23.145 -1.635 23.267 hybrid contribution 0.219 0.847 0.003 0.875 sum 1.950 -22.298 -1.632 22.443 Atomic orbital electron populations 1.69951 1.06032 1.26619 1.51189 1.25015 0.94854 0.99218 0.95397 0.86653 0.79575 0.83079 0.78685 1.20232 1.21340 1.20231 1.21241 0.93153 0.91042 1.50193 0.92646 1.19122 0.93968 0.91475 0.97048 1.21441 0.98608 0.91549 1.01620 1.21866 0.98268 0.94235 1.03374 1.21169 0.90205 0.83084 0.74621 1.90647 1.17045 1.84029 1.49060 1.48071 1.06641 1.05343 1.74839 1.21713 0.81001 1.00057 0.98707 1.21952 0.99434 0.96364 0.99527 1.21338 0.94020 0.97166 1.01893 1.22005 0.94357 0.98074 0.98908 0.90695 1.21822 0.94640 0.97909 1.00759 1.22638 0.97601 0.96502 0.99908 1.22396 0.92704 0.97018 1.02797 1.21761 0.91411 0.86743 0.96882 0.90899 0.93035 0.96672 0.96662 0.92735 0.92771 0.89613 0.89565 0.91677 0.89213 0.90588 0.91361 0.91859 0.91542 0.91751 0.91733 0.91961 0.91682 0.91367 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 10 C -0.09 -2.08 4.44 -26.73 -0.12 -2.20 16 11 C -0.14 -2.36 4.12 -27.89 -0.11 -2.48 16 12 C 0.52 8.72 7.71 -10.99 -0.08 8.63 16 13 O -0.53 -10.58 12.89 5.56 0.07 -10.51 16 14 N -0.61 -8.07 2.92 -164.34 -0.48 -8.54 16 15 C 0.11 1.07 6.31 -3.42 -0.02 1.05 16 16 C -0.13 -1.10 5.95 -26.42 -0.16 -1.26 16 17 C -0.11 -0.85 5.68 -27.10 -0.15 -1.00 16 18 C -0.11 -1.12 2.32 -90.52 -0.21 -1.33 16 19 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 20 C -0.11 -0.98 6.53 -26.04 -0.17 -1.15 16 21 C -0.13 -1.25 6.88 -24.33 -0.17 -1.41 16 22 C -0.11 -1.43 4.86 -25.43 -0.12 -1.56 16 23 C 0.14 1.61 3.02 -67.11 -0.20 1.41 16 24 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 29 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.09 1.35 7.75 -51.93 -0.40 0.95 16 31 H 0.09 1.36 8.02 -51.93 -0.42 0.94 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.88 6.19 -51.93 -0.32 0.56 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.49 8.04 -51.93 -0.42 0.07 16 38 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 39 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.09 1.45 6.37 -51.93 -0.33 1.12 16 LS Contribution 331.63 15.07 5.00 5.00 Total: -1.00 -32.28 331.63 -9.53 -41.81 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -7.76 Total: -3.55 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -2.07 Total: -14.83 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.26 Total: -35.11 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.07 Total: -10.51 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.28 -9.53 -41.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593986254.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.985 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds