Wall clock time and date at job start Mon Mar 30 2020 07:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00408 * 2 1 4 4 H 1.48498 * 109.47263 * 240.00479 * 3 2 1 5 5 H 1.48500 * 109.46885 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47327 * 120.00046 * 3 2 1 7 7 C 1.37879 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00119 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00205 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47446 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47608 * 180.02562 * 10 9 7 12 12 C 1.50694 * 109.47587 * 179.97438 * 11 10 9 13 13 O 1.21281 * 119.99875 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00132 * 179.97438 * 12 11 10 15 15 C 1.47911 * 122.26882 * 359.97438 * 14 12 11 16 16 C 1.52702 * 111.05105 * 127.93577 * 15 14 12 17 17 C 1.53899 * 111.15559 * 48.74638 * 16 15 14 18 18 C 1.51331 * 107.20043 * 301.92036 * 17 16 15 19 19 H 1.09002 * 109.59976 * 308.36667 * 18 17 16 20 20 C 1.52210 * 117.80226 * 182.19202 * 18 17 16 21 21 C 1.55064 * 105.12699 * 212.77956 * 20 18 17 22 22 C 1.55464 * 106.32050 * 3.91662 * 21 20 18 23 23 C 1.45519 * 122.26681 * 180.02562 * 14 12 11 24 24 H 1.08995 * 110.93363 * 120.48240 * 23 14 12 25 25 H 0.96995 * 119.99898 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46815 * 60.00250 * 9 7 2 27 27 H 1.08999 * 109.47245 * 300.00832 * 9 7 2 28 28 H 1.09003 * 109.46962 * 60.00276 * 10 9 7 29 29 H 1.08999 * 109.47525 * 300.00596 * 10 9 7 30 30 H 1.09003 * 109.46825 * 60.00081 * 11 10 9 31 31 H 1.08999 * 109.47073 * 300.00762 * 11 10 9 32 32 H 1.09001 * 109.16146 * 248.33939 * 15 14 12 33 33 H 1.08997 * 109.16318 * 7.58222 * 15 14 12 34 34 H 1.09005 * 109.04171 * 168.96420 * 16 15 14 35 35 H 1.09001 * 109.04857 * 287.91701 * 16 15 14 36 36 H 1.09004 * 108.94617 * 183.03948 * 17 16 15 37 37 H 1.08996 * 110.88659 * 61.89158 * 17 16 15 38 38 H 1.09006 * 110.31022 * 331.69363 * 20 18 17 39 39 H 1.09007 * 110.31019 * 93.86404 * 20 18 17 40 40 H 1.08996 * 110.08616 * 123.13481 * 21 20 18 41 41 H 1.09005 * 110.08098 * 244.65008 * 21 20 18 42 42 H 1.08997 * 110.74637 * 142.41424 * 22 21 20 43 43 H 1.09003 * 110.75093 * 265.58194 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9872 -0.0012 12 6 2.4593 -6.1326 -0.0018 13 8 3.6517 -5.9110 -0.0013 14 7 2.0100 -7.4033 -0.0019 15 6 0.5676 -7.7309 -0.0009 16 6 0.2259 -8.7063 -1.1249 17 6 1.1980 -9.8994 -1.1398 18 6 2.5936 -9.3374 -1.3027 19 1 2.6180 -8.6610 -2.1571 20 6 3.7492 -10.3235 -1.3990 21 6 4.9502 -9.6060 -0.7302 22 6 4.4032 -8.2585 -0.1806 23 6 2.9111 -8.5460 -0.0020 24 1 2.7468 -9.1716 0.8753 25 1 -0.4850 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6245 -2.5571 0.8896 28 1 2.8717 -3.6044 0.8895 29 1 2.8719 -3.6044 -0.8904 30 1 0.8538 -5.0446 -0.8914 31 1 0.8531 -5.0451 0.8885 32 1 0.3037 -8.1811 0.9561 33 1 -0.0074 -6.8149 -0.1359 34 1 -0.7888 -9.0766 -0.9783 35 1 0.2784 -8.1821 -2.0791 36 1 0.9559 -10.5427 -1.9858 37 1 1.1322 -10.4658 -0.2109 38 1 3.5094 -11.2410 -0.8616 39 1 3.9731 -10.5431 -2.4430 40 1 5.3409 -10.2125 0.0867 41 1 5.7327 -9.4209 -1.4662 42 1 4.8662 -8.0152 0.7756 43 1 4.5614 -7.4552 -0.9002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593986254.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:44 Heat of formation + Delta-G solvation = -82.704293 kcal Electronic energy + Delta-G solvation = -20613.273579 eV Core-core repulsion = 17656.128145 eV Total energy + Delta-G solvation = -2957.145434 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.73048 -39.30365 -36.45951 -36.09767 -34.00607 -33.82120 -30.28554 -29.77312 -28.54122 -26.31309 -25.18576 -22.76021 -22.57520 -21.61864 -20.79741 -19.95544 -18.45094 -17.39999 -17.17254 -16.85474 -16.46900 -16.04616 -15.64885 -15.23471 -15.01157 -14.56704 -14.35692 -14.31079 -14.11674 -13.76159 -13.60779 -13.12518 -12.94499 -12.63001 -12.53723 -12.48958 -12.29558 -12.15418 -11.80657 -11.78524 -11.57897 -11.53856 -11.47222 -11.41051 -11.26219 -11.21802 -10.55064 -10.32440 -9.49163 -8.20980 -6.31217 1.38739 1.41850 1.49971 1.65274 2.01625 2.41079 3.11770 3.35580 3.62886 3.76292 3.90361 4.06083 4.15699 4.16876 4.22360 4.28773 4.40964 4.42891 4.44137 4.59183 4.64540 4.70048 4.84976 4.91322 4.93939 4.95926 5.04574 5.07121 5.10292 5.15377 5.17016 5.20974 5.29356 5.32142 5.41637 5.51961 5.54153 5.73341 5.77041 5.84841 6.26026 6.46090 6.83527 7.24569 7.37360 8.90455 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.034129 B = 0.003738 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.231345 B = 7489.706668 C = 8107.368252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.050 0.950 9 C 0.028 3.972 10 C -0.080 4.080 11 C -0.128 4.128 12 C 0.515 3.485 13 O -0.574 6.574 14 N -0.607 5.607 15 C 0.098 3.902 16 C -0.131 4.131 17 C -0.102 4.102 18 C -0.105 4.105 19 H 0.050 0.950 20 C -0.107 4.107 21 C -0.123 4.123 22 C -0.114 4.114 23 C 0.126 3.874 24 H 0.091 0.909 25 H 0.265 0.735 26 H 0.000 1.000 27 H 0.001 0.999 28 H 0.039 0.961 29 H 0.038 0.962 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.524 -25.306 -1.591 25.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.069 0.931 9 C -0.009 4.009 10 C -0.118 4.118 11 C -0.167 4.167 12 C 0.305 3.695 13 O -0.454 6.454 14 N -0.340 5.340 15 C -0.023 4.023 16 C -0.169 4.169 17 C -0.140 4.140 18 C -0.125 4.125 19 H 0.069 0.931 20 C -0.145 4.145 21 C -0.161 4.161 22 C -0.152 4.152 23 C 0.023 3.977 24 H 0.109 0.891 25 H 0.074 0.926 26 H 0.018 0.982 27 H 0.019 0.981 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.986 -25.053 -1.588 25.123 hybrid contribution 0.419 1.406 -0.004 1.467 sum 1.404 -23.647 -1.592 23.742 Atomic orbital electron populations 1.70056 1.07491 1.27893 1.51428 1.25903 0.95840 1.03046 0.94595 0.85552 0.78408 0.78357 0.79055 1.19452 1.20214 1.19435 1.21655 0.93309 0.92828 1.50988 0.93144 1.19000 0.94141 0.92343 0.95451 1.21144 0.97589 0.92967 1.00100 1.21677 0.98034 0.92019 1.04990 1.20993 0.89345 0.84307 0.74868 1.90644 1.18468 1.84900 1.51376 1.48103 1.08595 1.04411 1.72909 1.22046 0.78672 1.00897 1.00702 1.21953 1.00975 0.95951 0.98053 1.21353 0.92112 0.97169 1.03343 1.21966 0.96307 0.97727 0.96462 0.93146 1.21823 0.93175 0.98089 1.01441 1.22608 0.98181 0.94893 1.00413 1.22291 0.94202 0.97780 1.00970 1.21999 0.90401 0.86475 0.98874 0.89107 0.92606 0.98154 0.98087 0.94194 0.94322 0.88064 0.87829 0.89569 0.89267 0.87972 0.92524 0.90353 0.89973 0.89549 0.90974 0.90404 0.91838 0.93185 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 2 C 0.00 0.25 5.46 84.66 0.46 0.71 16 3 Si 0.96 45.70 29.54 68.60 2.03 47.73 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.55 -32.97 9.11 25.60 0.23 -32.74 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.03 1.51 4.97 29.85 0.15 1.65 16 10 C -0.08 -3.66 4.44 30.59 0.14 -3.52 16 11 C -0.13 -4.43 4.12 29.85 0.12 -4.30 16 12 C 0.51 17.66 7.71 87.65 0.68 18.34 16 13 O -0.57 -24.06 12.89 -3.03 -0.04 -24.10 16 14 N -0.61 -15.51 2.92 -792.23 -2.31 -17.82 16 15 C 0.10 1.72 6.31 86.01 0.54 2.26 16 16 C -0.13 -1.76 5.95 30.80 0.18 -1.58 16 17 C -0.10 -1.27 5.68 30.35 0.17 -1.10 16 18 C -0.11 -1.87 2.32 -10.73 -0.02 -1.89 16 19 H 0.05 1.15 8.08 -2.39 -0.02 1.13 16 20 C -0.11 -1.58 6.53 31.04 0.20 -1.37 16 21 C -0.12 -2.25 6.88 32.15 0.22 -2.03 16 22 C -0.11 -3.03 4.86 31.44 0.15 -2.87 16 23 C 0.13 2.84 3.02 46.05 0.14 2.98 16 24 H 0.09 1.77 8.06 -2.39 -0.02 1.75 16 25 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 26 H 0.00 0.00 8.14 -2.39 -0.02 -0.01 16 27 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 28 H 0.04 1.91 8.10 -2.39 -0.02 1.89 16 29 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 30 H 0.10 3.18 7.75 -2.39 -0.02 3.16 16 31 H 0.10 3.22 8.02 -2.39 -0.02 3.20 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.58 6.19 -2.39 -0.01 1.56 16 34 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.08 0.82 8.04 -2.39 -0.02 0.80 16 38 H 0.09 0.94 8.10 -2.38 -0.02 0.92 16 39 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.06 1.90 6.37 -2.39 -0.02 1.88 16 Total: -1.00 -71.88 331.63 4.28 -67.60 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 0.95 Total: 8.68 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: 3.37 Total: -25.47 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -2.03 Total: -74.44 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.04 Total: -24.10 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -71.88 4.28 -67.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593986254.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.100 kcal (2) G-P(sol) polarization free energy of solvation -71.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds