Wall clock time and date at job start Mon Mar 30 2020 07:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86809 * 119.99831 * 2 1 4 4 H 1.48496 * 109.46907 * 269.99841 * 3 2 1 5 5 H 1.48495 * 109.46975 * 29.99692 * 3 2 1 6 6 H 1.48491 * 109.46986 * 149.99601 * 3 2 1 7 7 C 1.37872 * 120.00301 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00384 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99836 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46880 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46657 * 180.02562 * 10 9 7 12 12 C 1.50704 * 109.46721 * 180.02562 * 11 10 9 13 13 O 1.21280 * 120.00132 * 359.97438 * 12 11 10 14 14 N 1.34770 * 119.99623 * 179.97438 * 12 11 10 15 15 C 1.46811 * 119.66063 * 0.02562 * 14 12 11 16 16 C 1.53441 * 107.68944 * 127.76930 * 15 14 12 17 17 C 1.52753 * 108.51927 * 57.82170 * 16 15 14 18 18 C 1.52993 * 110.71759 * 296.39455 * 17 16 15 19 19 H 1.09002 * 111.46541 * 291.59956 * 18 17 16 20 20 C 1.54906 * 107.30823 * 168.09636 * 18 17 16 21 21 C 1.53954 * 106.46087 * 268.10763 * 20 18 17 22 22 C 1.54482 * 106.59315 * 358.98026 * 21 20 18 23 23 C 1.45248 * 119.65782 * 180.02562 * 14 12 11 24 24 H 1.09006 * 109.83858 * 348.34100 * 23 14 12 25 25 H 0.96999 * 120.00204 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46745 * 60.00090 * 9 7 2 27 27 H 1.09001 * 109.47265 * 299.99903 * 9 7 2 28 28 H 1.09002 * 109.47100 * 60.00623 * 10 9 7 29 29 H 1.08993 * 109.47135 * 299.99921 * 10 9 7 30 30 H 1.08996 * 109.47347 * 60.00486 * 11 10 9 31 31 H 1.09004 * 109.46817 * 299.99975 * 11 10 9 32 32 H 1.09006 * 109.81714 * 247.31095 * 15 14 12 33 33 H 1.08998 * 109.81646 * 8.22146 * 15 14 12 34 34 H 1.09003 * 109.62963 * 177.53462 * 16 15 14 35 35 H 1.09000 * 109.62725 * 297.91512 * 16 15 14 36 36 H 1.09004 * 109.23489 * 176.07947 * 17 16 15 37 37 H 1.09000 * 109.22995 * 56.71310 * 17 16 15 38 38 H 1.08998 * 110.05561 * 27.35224 * 20 18 17 39 39 H 1.08998 * 110.05995 * 148.85661 * 20 18 17 40 40 H 1.08996 * 110.03101 * 239.69930 * 21 20 18 41 41 H 1.08998 * 110.02913 * 118.26563 * 21 20 18 42 42 H 1.08995 * 110.56640 * 218.28479 * 22 21 20 43 43 H 1.09001 * 110.56250 * 95.43449 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4597 -6.1325 0.0005 13 8 3.6521 -5.9108 0.0009 14 7 2.0105 -7.4031 0.0006 15 6 0.5655 -7.6628 -0.0004 16 6 0.2659 -8.6269 -1.1559 17 6 1.0909 -9.8967 -0.9546 18 6 2.5874 -9.5872 -1.0280 19 1 2.8867 -9.3022 -2.0367 20 6 3.3427 -10.8403 -0.5192 21 6 3.5553 -10.6376 0.9921 22 6 2.9470 -9.2616 1.3426 23 6 2.9609 -8.5014 0.0018 24 1 3.9625 -8.1242 -0.2047 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5570 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8906 29 1 2.8720 -3.6042 -0.8894 30 1 0.8541 -5.0446 -0.8903 31 1 0.8534 -5.0450 0.8897 32 1 0.2710 -8.1171 0.9456 33 1 0.0224 -6.7293 -0.1479 34 1 -0.7952 -8.8763 -1.1590 35 1 0.5347 -8.1585 -2.1027 36 1 0.8351 -10.6180 -1.7308 37 1 0.8602 -10.3237 0.0214 38 1 2.7450 -11.7344 -0.6960 39 1 4.3049 -10.9273 -1.0237 40 1 4.6203 -10.6450 1.2236 41 1 3.0461 -11.4239 1.5494 42 1 3.5628 -8.7474 2.0805 43 1 1.9262 -9.3759 1.7073 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593986255.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:49 Heat of formation + Delta-G solvation = -71.431915 kcal Electronic energy + Delta-G solvation = -20535.186496 eV Core-core repulsion = 17578.529870 eV Total energy + Delta-G solvation = -2956.656627 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.72318 -38.37331 -35.28197 -34.17563 -32.86612 -31.99691 -29.27795 -28.73701 -27.25363 -25.05221 -23.70175 -22.47912 -20.84700 -20.42690 -19.54733 -18.28585 -17.06355 -16.30392 -15.98366 -15.72022 -15.40003 -14.58791 -14.41513 -14.09574 -13.89273 -13.50099 -13.36555 -13.02920 -12.67861 -12.25292 -12.13443 -11.78712 -11.63172 -11.49830 -11.40335 -11.31984 -11.03971 -10.87624 -10.78151 -10.56969 -10.51399 -10.42418 -10.39745 -9.63987 -9.57188 -9.21865 -8.98116 -8.50954 -8.29746 -5.95525 -3.96738 2.92789 3.10326 3.36432 3.42085 3.47211 4.26908 4.43836 4.50333 4.51212 4.73699 4.83277 4.88545 4.99741 5.16522 5.25838 5.27431 5.32674 5.40534 5.42491 5.42929 5.58311 5.64554 5.69351 5.72403 5.73349 5.74586 5.80888 5.88336 5.94906 6.03732 6.12516 6.23724 6.29951 6.70963 6.76257 6.97354 7.19538 7.53040 7.73677 7.86651 8.05403 8.47424 8.49921 9.10364 9.67120 11.16003 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.041389 B = 0.003509 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.339801 B = 7976.883337 C = 8363.477977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.137 4.137 12 C 0.513 3.487 13 O -0.538 6.538 14 N -0.610 5.610 15 C 0.105 3.895 16 C -0.137 4.137 17 C -0.111 4.111 18 C -0.101 4.101 19 H 0.081 0.919 20 C -0.119 4.119 21 C -0.121 4.121 22 C -0.133 4.133 23 C 0.140 3.860 24 H 0.101 0.899 25 H 0.259 0.741 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.315 -24.235 -0.417 24.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.177 4.177 12 C 0.303 3.697 13 O -0.414 6.414 14 N -0.343 5.343 15 C -0.018 4.018 16 C -0.175 4.175 17 C -0.149 4.149 18 C -0.120 4.120 19 H 0.099 0.901 20 C -0.157 4.157 21 C -0.159 4.159 22 C -0.172 4.172 23 C 0.036 3.964 24 H 0.119 0.881 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.808 -23.984 -0.405 24.001 hybrid contribution 0.273 0.834 0.006 0.877 sum 1.081 -23.150 -0.399 23.179 Atomic orbital electron populations 1.69962 1.06026 1.26503 1.51295 1.25018 0.94855 0.99228 0.95414 0.86594 0.79913 0.83437 0.78094 1.20685 1.21278 1.19833 1.21280 0.93199 0.91031 1.50038 0.92589 1.19130 0.93962 0.91470 0.97076 1.21455 0.98632 0.91579 1.01645 1.21871 0.98212 0.94153 1.03460 1.21326 0.90243 0.83656 0.74508 1.90654 1.17397 1.84293 1.49071 1.47703 1.06473 1.05599 1.74521 1.21829 0.80827 1.00653 0.98479 1.21914 1.00118 0.96275 0.99171 1.21530 0.94085 0.97286 1.01981 1.22262 0.95670 0.94909 0.99149 0.90052 1.22303 1.00292 0.97383 0.95744 1.22092 1.01001 0.96897 0.95930 1.22580 1.01327 0.95573 0.97728 1.21401 0.94377 0.86339 0.94331 0.88148 0.93095 0.96643 0.96618 0.92742 0.92758 0.89421 0.89452 0.91524 0.88822 0.90683 0.91222 0.91971 0.91707 0.91497 0.91708 0.91661 0.91799 0.91343 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.21 29.54 -169.99 -5.02 17.19 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.10 -2.11 4.44 -26.73 -0.12 -2.23 16 11 C -0.14 -2.36 4.02 -27.88 -0.11 -2.47 16 12 C 0.51 8.73 7.66 -10.99 -0.08 8.65 16 13 O -0.54 -11.19 15.31 5.56 0.09 -11.10 16 14 N -0.61 -7.99 2.73 -165.08 -0.45 -8.44 16 15 C 0.11 1.05 6.06 -3.64 -0.02 1.03 16 16 C -0.14 -1.15 6.10 -26.63 -0.16 -1.31 16 17 C -0.11 -0.89 4.65 -26.86 -0.12 -1.01 16 18 C -0.10 -0.94 3.46 -88.97 -0.31 -1.25 16 19 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 20 C -0.12 -0.92 6.19 -25.23 -0.16 -1.08 16 21 C -0.12 -0.98 6.77 -25.46 -0.17 -1.15 16 22 C -0.13 -1.35 5.97 -25.36 -0.15 -1.50 16 23 C 0.14 1.66 2.93 -67.36 -0.20 1.47 16 24 H 0.10 1.44 6.95 -51.93 -0.36 1.08 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 29 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 30 H 0.09 1.37 7.62 -51.93 -0.40 0.98 16 31 H 0.09 1.37 7.93 -51.93 -0.41 0.96 16 32 H 0.07 0.59 7.54 -51.93 -0.39 0.20 16 33 H 0.09 0.93 5.82 -51.93 -0.30 0.63 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.50 7.14 -51.93 -0.37 0.13 16 38 H 0.07 0.45 7.77 -51.93 -0.40 0.04 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.66 6.80 -51.93 -0.35 0.30 16 LS Contribution 331.24 15.07 4.99 4.99 Total: -1.00 -32.76 331.24 -9.42 -42.17 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -7.60 Total: -3.89 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -2.16 Total: -14.38 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.29 Total: -34.98 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.76 -9.42 -42.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593986255.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.257 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds