Wall clock time and date at job start Mon Mar 30 2020 07:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86809 * 119.99831 * 2 1 4 4 H 1.48496 * 109.46907 * 269.99841 * 3 2 1 5 5 H 1.48495 * 109.46975 * 29.99692 * 3 2 1 6 6 H 1.48491 * 109.46986 * 149.99601 * 3 2 1 7 7 C 1.37872 * 120.00301 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00384 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99836 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46880 * 179.97438 * 9 7 2 11 11 C 1.53007 * 109.46657 * 180.02562 * 10 9 7 12 12 C 1.50704 * 109.46721 * 180.02562 * 11 10 9 13 13 O 1.21280 * 120.00132 * 359.97438 * 12 11 10 14 14 N 1.34770 * 119.99623 * 179.97438 * 12 11 10 15 15 C 1.46811 * 119.66063 * 0.02562 * 14 12 11 16 16 C 1.53441 * 107.68944 * 127.76930 * 15 14 12 17 17 C 1.52753 * 108.51927 * 57.82170 * 16 15 14 18 18 C 1.52993 * 110.71759 * 296.39455 * 17 16 15 19 19 H 1.09002 * 111.46541 * 291.59956 * 18 17 16 20 20 C 1.54906 * 107.30823 * 168.09636 * 18 17 16 21 21 C 1.53954 * 106.46087 * 268.10763 * 20 18 17 22 22 C 1.54482 * 106.59315 * 358.98026 * 21 20 18 23 23 C 1.45248 * 119.65782 * 180.02562 * 14 12 11 24 24 H 1.09006 * 109.83858 * 348.34100 * 23 14 12 25 25 H 0.96999 * 120.00204 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46745 * 60.00090 * 9 7 2 27 27 H 1.09001 * 109.47265 * 299.99903 * 9 7 2 28 28 H 1.09002 * 109.47100 * 60.00623 * 10 9 7 29 29 H 1.08993 * 109.47135 * 299.99921 * 10 9 7 30 30 H 1.08996 * 109.47347 * 60.00486 * 11 10 9 31 31 H 1.09004 * 109.46817 * 299.99975 * 11 10 9 32 32 H 1.09006 * 109.81714 * 247.31095 * 15 14 12 33 33 H 1.08998 * 109.81646 * 8.22146 * 15 14 12 34 34 H 1.09003 * 109.62963 * 177.53462 * 16 15 14 35 35 H 1.09000 * 109.62725 * 297.91512 * 16 15 14 36 36 H 1.09004 * 109.23489 * 176.07947 * 17 16 15 37 37 H 1.09000 * 109.22995 * 56.71310 * 17 16 15 38 38 H 1.08998 * 110.05561 * 27.35224 * 20 18 17 39 39 H 1.08998 * 110.05995 * 148.85661 * 20 18 17 40 40 H 1.08996 * 110.03101 * 239.69930 * 21 20 18 41 41 H 1.08998 * 110.02913 * 118.26563 * 21 20 18 42 42 H 1.08995 * 110.56640 * 218.28479 * 22 21 20 43 43 H 1.09001 * 110.56250 * 95.43449 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4597 -6.1325 0.0005 13 8 3.6521 -5.9108 0.0009 14 7 2.0105 -7.4031 0.0006 15 6 0.5655 -7.6628 -0.0004 16 6 0.2659 -8.6269 -1.1559 17 6 1.0909 -9.8967 -0.9546 18 6 2.5874 -9.5872 -1.0280 19 1 2.8867 -9.3022 -2.0367 20 6 3.3427 -10.8403 -0.5192 21 6 3.5553 -10.6376 0.9921 22 6 2.9470 -9.2616 1.3426 23 6 2.9609 -8.5014 0.0018 24 1 3.9625 -8.1242 -0.2047 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5570 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 2.8720 -3.6043 0.8906 29 1 2.8720 -3.6042 -0.8894 30 1 0.8541 -5.0446 -0.8903 31 1 0.8534 -5.0450 0.8897 32 1 0.2710 -8.1171 0.9456 33 1 0.0224 -6.7293 -0.1479 34 1 -0.7952 -8.8763 -1.1590 35 1 0.5347 -8.1585 -2.1027 36 1 0.8351 -10.6180 -1.7308 37 1 0.8602 -10.3237 0.0214 38 1 2.7450 -11.7344 -0.6960 39 1 4.3049 -10.9273 -1.0237 40 1 4.6203 -10.6450 1.2236 41 1 3.0461 -11.4239 1.5494 42 1 3.5628 -8.7474 2.0805 43 1 1.9262 -9.3759 1.7073 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593986255.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:48 Heat of formation + Delta-G solvation = -89.762547 kcal Electronic energy + Delta-G solvation = -20535.981372 eV Core-core repulsion = 17578.529870 eV Total energy + Delta-G solvation = -2957.451503 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74418 -39.52939 -36.25191 -36.10664 -34.01405 -33.73311 -30.35422 -29.88742 -28.57359 -26.19488 -25.34381 -23.29725 -22.46076 -21.27944 -20.79852 -19.27737 -18.52778 -18.13693 -17.03250 -16.82400 -16.63394 -16.41921 -15.37496 -15.27458 -15.10742 -14.51192 -14.32832 -14.21012 -13.97431 -13.78611 -13.58397 -13.13303 -12.91412 -12.64776 -12.54511 -12.48039 -12.33132 -12.24163 -12.10531 -11.79241 -11.58779 -11.54182 -11.45981 -11.25198 -11.22706 -11.08864 -10.68247 -10.54901 -9.56125 -8.20787 -6.30830 1.39060 1.40278 1.51909 1.59392 2.02046 2.41323 3.12000 3.46334 3.67607 3.68452 3.85704 4.04799 4.09359 4.15630 4.21749 4.28472 4.40071 4.43423 4.52418 4.55565 4.67206 4.69208 4.77628 4.89073 4.93509 4.97452 4.99500 5.06390 5.10392 5.14624 5.17170 5.19524 5.27726 5.28568 5.42680 5.52262 5.54646 5.71597 5.73796 5.85292 6.26178 6.38358 6.84002 7.18854 7.37750 8.90751 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.041389 B = 0.003509 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.339801 B = 7976.883337 C = 8363.477977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.050 0.950 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.127 4.127 12 C 0.509 3.491 13 O -0.588 6.588 14 N -0.599 5.599 15 C 0.095 3.905 16 C -0.133 4.133 17 C -0.108 4.108 18 C -0.098 4.098 19 H 0.070 0.930 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.129 4.129 23 C 0.130 3.870 24 H 0.066 0.934 25 H 0.265 0.735 26 H 0.002 0.998 27 H 0.002 0.998 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.083 0.917 42 H 0.049 0.951 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.716 -25.907 -0.371 25.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.068 0.932 9 C -0.009 4.009 10 C -0.120 4.120 11 C -0.166 4.166 12 C 0.299 3.701 13 O -0.468 6.468 14 N -0.330 5.330 15 C -0.027 4.027 16 C -0.171 4.171 17 C -0.145 4.145 18 C -0.117 4.117 19 H 0.088 0.912 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.167 4.167 23 C 0.026 3.974 24 H 0.084 0.916 25 H 0.074 0.926 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.068 0.932 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.256 -25.705 -0.363 25.709 hybrid contribution 0.562 1.325 -0.008 1.439 sum 0.306 -24.380 -0.371 24.385 Atomic orbital electron populations 1.70061 1.07451 1.27818 1.51500 1.25897 0.95847 1.03022 0.94627 0.85498 0.78618 0.78688 0.78570 1.19675 1.20171 1.19366 1.21681 0.93296 0.92853 1.50869 0.93211 1.19004 0.94113 0.92235 0.95571 1.21168 0.97656 0.93089 1.00078 1.21694 0.97910 0.91714 1.05307 1.21218 0.89315 0.84980 0.74556 1.90634 1.19149 1.85191 1.51863 1.47738 1.08283 1.04515 1.72438 1.22167 0.78490 1.01593 1.00428 1.21915 1.01735 0.95886 0.97564 1.21537 0.92366 0.97347 1.03249 1.22243 0.97424 0.94444 0.97636 0.91174 1.22295 1.00455 0.97198 0.95242 1.22084 1.01003 0.95946 0.96412 1.22540 1.01868 0.96321 0.96021 1.21556 0.92587 0.86560 0.96746 0.91612 0.92610 0.97996 0.97965 0.94313 0.94330 0.87563 0.87530 0.89506 0.88706 0.88185 0.92491 0.90251 0.90570 0.89393 0.91799 0.91893 0.89811 0.93183 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 2 C 0.00 0.24 5.46 84.65 0.46 0.71 16 3 Si 0.96 45.69 29.54 68.60 2.03 47.72 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.55 -32.89 9.11 25.60 0.23 -32.66 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.03 1.51 4.97 29.85 0.15 1.65 16 10 C -0.08 -3.75 4.44 30.60 0.14 -3.62 16 11 C -0.13 -4.37 4.02 29.85 0.12 -4.25 16 12 C 0.51 17.73 7.66 87.66 0.67 18.40 16 13 O -0.59 -25.73 15.31 -3.03 -0.05 -25.78 16 14 N -0.60 -15.42 2.73 -794.60 -2.17 -17.59 16 15 C 0.09 1.69 6.06 86.47 0.52 2.22 16 16 C -0.13 -1.86 6.10 30.66 0.19 -1.68 16 17 C -0.11 -1.36 4.65 30.51 0.14 -1.21 16 18 C -0.10 -1.68 3.46 -9.72 -0.03 -1.71 16 19 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 20 C -0.11 -1.50 6.19 31.57 0.20 -1.30 16 21 C -0.12 -1.63 6.77 31.42 0.21 -1.42 16 22 C -0.13 -2.46 5.97 31.48 0.19 -2.27 16 23 C 0.13 3.06 2.93 46.03 0.13 3.20 16 24 H 0.07 2.02 6.95 -2.38 -0.02 2.00 16 25 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 26 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 27 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 29 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 30 H 0.11 3.26 7.62 -2.39 -0.02 3.24 16 31 H 0.11 3.26 7.93 -2.38 -0.02 3.24 16 32 H 0.09 1.26 7.54 -2.38 -0.02 1.24 16 33 H 0.09 1.69 5.82 -2.39 -0.01 1.67 16 34 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.08 0.83 7.14 -2.39 -0.02 0.82 16 38 H 0.09 0.83 7.77 -2.39 -0.02 0.81 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.08 1.34 6.80 -2.39 -0.02 1.32 16 Total: -1.00 -72.61 331.24 4.38 -68.23 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 0.96 Total: 7.78 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 3.32 Total: -23.95 kcal Atomic # 7 Polarization: -72.11 SS G_CDS: -1.88 Total: -74.00 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.05 Total: -25.78 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -72.61 4.38 -68.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593986255.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.532 kcal (2) G-P(sol) polarization free energy of solvation -72.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds