Wall clock time and date at job start Mon Mar 30 2020 06:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99788 * 2 1 4 4 H 1.48499 * 109.46879 * 269.99964 * 3 2 1 5 5 H 1.48502 * 109.47302 * 29.99961 * 3 2 1 6 6 H 1.48500 * 109.47182 * 149.99926 * 3 2 1 7 7 C 1.37874 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99829 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46955 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47292 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47390 * 179.97438 * 11 10 9 13 13 O 1.21287 * 119.99813 * 359.97438 * 12 11 10 14 14 N 1.34772 * 120.00073 * 180.02562 * 12 11 10 15 15 C 1.46496 * 120.00151 * 180.02562 * 14 12 11 16 16 H 1.09002 * 109.47021 * 324.99552 * 15 14 12 17 17 C 1.53005 * 109.47414 * 84.99440 * 15 14 12 18 18 C 1.52998 * 109.47249 * 119.99940 * 17 15 14 19 19 C 1.53001 * 109.46891 * 60.00061 * 18 17 15 20 20 C 1.53000 * 109.47516 * 300.00342 * 19 18 17 21 21 C 1.52997 * 109.47060 * 359.97438 * 20 19 18 22 22 C 1.53006 * 109.47127 * 300.00449 * 21 20 19 23 23 C 1.52997 * 109.47164 * 59.99836 * 22 21 20 24 24 H 0.96996 * 120.00179 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47064 * 60.00543 * 9 7 2 26 26 H 1.09003 * 109.47332 * 299.99924 * 9 7 2 27 27 H 1.08996 * 109.47604 * 59.99817 * 10 9 7 28 28 H 1.09001 * 109.47268 * 300.00126 * 10 9 7 29 29 H 1.09002 * 109.47109 * 59.99992 * 11 10 9 30 30 H 1.08992 * 109.46673 * 299.99996 * 11 10 9 31 31 H 0.96994 * 119.99727 * 359.97438 * 14 12 11 32 32 H 1.09002 * 109.46879 * 359.97438 * 17 15 14 33 33 H 1.09004 * 109.47259 * 240.00373 * 17 15 14 34 34 H 1.08993 * 109.46892 * 180.02562 * 18 17 15 35 35 H 1.09000 * 109.47026 * 179.97438 * 19 18 17 36 36 H 1.09004 * 109.46865 * 60.00027 * 19 18 17 37 37 H 1.09002 * 109.47398 * 119.99910 * 20 19 18 38 38 H 1.09001 * 109.47194 * 240.00091 * 20 19 18 39 39 H 1.08996 * 109.47853 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.47050 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.47002 * 299.99574 * 22 21 20 42 42 H 1.09001 * 109.46601 * 240.00089 * 23 22 21 43 43 H 1.08994 * 109.46976 * 120.00126 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4596 -6.1326 -0.0018 13 8 3.6521 -5.9109 -0.0022 14 7 2.0104 -7.4032 -0.0030 15 6 2.9624 -8.5167 -0.0030 16 1 3.8387 -8.2455 -0.5917 17 6 3.3885 -8.8236 1.4341 18 6 3.0106 -10.2649 1.7814 19 6 3.7208 -11.2233 0.8232 20 6 3.2949 -10.9164 -0.6139 21 6 2.3002 -9.7539 -0.6138 22 6 1.0701 -10.1352 0.2124 23 6 1.4962 -10.4420 1.6495 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8897 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8905 29 1 0.8540 -5.0446 -0.8914 30 1 0.8534 -5.0451 0.8885 31 1 1.0568 -7.5804 -0.0030 32 1 2.8829 -8.1405 2.1167 33 1 4.4672 -8.6980 1.5279 34 1 3.3138 -10.4833 2.8053 35 1 3.4520 -12.2501 1.0709 36 1 4.7995 -11.0977 0.9170 37 1 4.1712 -10.6452 -1.2026 38 1 2.8233 -11.7975 -1.0491 39 1 1.9963 -9.5355 -1.6375 40 1 0.3617 -9.3068 0.2129 41 1 0.5990 -11.0165 -0.2229 42 1 1.2274 -11.4690 1.8967 43 1 0.9899 -9.7596 2.3321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593994234.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:34 Heat of formation + Delta-G solvation = -81.354470 kcal Electronic energy + Delta-G solvation = -20267.223530 eV Core-core repulsion = 17310.136629 eV Total energy + Delta-G solvation = -2957.086901 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.00162 -38.87306 -34.39919 -34.03696 -32.01355 -31.61174 -31.14704 -29.72688 -27.52473 -24.02439 -22.90499 -22.59115 -21.99987 -20.47581 -19.70599 -17.41135 -16.76410 -16.57989 -16.36182 -16.08868 -15.35770 -15.12285 -14.39169 -14.28587 -13.50114 -13.34994 -12.77673 -12.39308 -12.37452 -12.32607 -12.28741 -12.25701 -12.22454 -12.08259 -11.74842 -11.29460 -10.98958 -10.78057 -10.56749 -10.50951 -10.30907 -10.24492 -10.02962 -9.63739 -9.60183 -9.21562 -8.97214 -8.89239 -8.29542 -5.95293 -3.96538 3.00451 3.36435 3.36821 3.42200 3.47420 4.23925 4.35040 4.40921 4.51520 4.86353 4.98941 5.02263 5.03916 5.07981 5.11831 5.19283 5.26429 5.32869 5.37486 5.40739 5.49924 5.70511 5.76182 5.76366 5.77338 5.88372 5.94664 6.01481 6.05363 6.10164 6.14107 6.19897 6.32690 6.65888 6.77251 6.97889 7.20463 7.69777 7.74715 7.87228 8.05782 8.49793 8.55308 9.10669 9.67293 11.16264 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.048668 B = 0.003110 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.187252 B = 9000.142589 C = 9172.188380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.139 4.139 12 C 0.512 3.488 13 O -0.539 6.539 14 N -0.735 5.735 15 C 0.152 3.848 16 H 0.085 0.915 17 C -0.124 4.124 18 C -0.086 4.086 19 C -0.115 4.115 20 C -0.110 4.110 21 C -0.094 4.094 22 C -0.115 4.115 23 C -0.114 4.114 24 H 0.259 0.741 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.396 0.604 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.785 -25.658 1.135 25.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.132 4.132 11 C -0.179 4.179 12 C 0.300 3.700 13 O -0.415 6.415 14 N -0.389 5.389 15 C 0.047 3.953 16 H 0.103 0.897 17 C -0.163 4.163 18 C -0.105 4.105 19 C -0.152 4.152 20 C -0.148 4.148 21 C -0.112 4.112 22 C -0.152 4.152 23 C -0.151 4.151 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.231 0.769 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.513 -25.359 1.135 25.509 hybrid contribution -0.118 0.836 0.013 0.844 sum 2.395 -24.523 1.148 24.667 Atomic orbital electron populations 1.69964 1.06033 1.26505 1.51300 1.25022 0.94857 0.99240 0.95424 0.86593 0.79908 0.83432 0.78094 1.20683 1.21275 1.19831 1.21284 0.93198 0.91042 1.50026 0.92585 1.19134 0.93981 0.91492 0.97083 1.21434 0.98601 0.91577 1.01635 1.21845 0.98192 0.94255 1.03615 1.21249 0.90364 0.83835 0.74559 1.90667 1.17335 1.84738 1.48711 1.46345 1.09902 1.05605 1.77050 1.20852 0.92739 0.85365 0.96365 0.89681 1.22038 1.01659 0.95864 0.96700 1.21068 0.95290 0.95103 0.99025 1.21567 1.00071 0.98859 0.94753 1.21485 0.98772 0.97528 0.97046 1.21291 0.95908 0.94608 0.99441 1.21538 0.96877 1.01241 0.95579 1.21546 0.95540 1.01343 0.96685 0.93094 0.96635 0.96638 0.92754 0.92759 0.89493 0.89502 0.76851 0.91201 0.91448 0.91193 0.92047 0.91893 0.91710 0.91643 0.90583 0.91961 0.91703 0.92079 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.09 -2.09 4.44 -26.73 -0.12 -2.20 16 11 C -0.14 -2.35 5.70 -27.88 -0.16 -2.51 16 12 C 0.51 8.38 7.79 -10.99 -0.09 8.30 16 13 O -0.54 -10.96 15.64 5.55 0.09 -10.87 16 14 N -0.74 -8.88 4.83 -53.78 -0.26 -9.14 16 15 C 0.15 1.68 2.41 -67.91 -0.16 1.52 16 16 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 17 C -0.12 -1.32 5.48 -26.73 -0.15 -1.47 16 18 C -0.09 -0.71 3.20 -90.60 -0.29 -1.00 16 19 C -0.11 -0.84 5.71 -26.73 -0.15 -0.99 16 20 C -0.11 -0.81 5.71 -26.73 -0.15 -0.97 16 21 C -0.09 -0.78 2.88 -90.59 -0.26 -1.04 16 22 C -0.11 -0.84 5.54 -26.73 -0.15 -0.98 16 23 C -0.11 -0.85 5.71 -26.71 -0.15 -1.00 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 28 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.40 3.81 6.87 -40.82 -0.28 3.53 16 32 H 0.07 0.84 7.85 -51.93 -0.41 0.43 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.44 6.51 -51.93 -0.34 0.10 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 333.77 15.07 5.03 5.03 Total: -1.00 -32.83 333.77 -9.53 -42.36 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -7.72 Total: -2.02 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -2.38 Total: -15.94 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.48 Total: -35.78 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.83 -9.53 -42.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593994234.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.996 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds