Wall clock time and date at job start Mon Mar 30 2020 06:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99788 * 2 1 4 4 H 1.48499 * 109.46879 * 269.99964 * 3 2 1 5 5 H 1.48502 * 109.47302 * 29.99961 * 3 2 1 6 6 H 1.48500 * 109.47182 * 149.99926 * 3 2 1 7 7 C 1.37874 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99829 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99931 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46955 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47292 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47390 * 179.97438 * 11 10 9 13 13 O 1.21287 * 119.99813 * 359.97438 * 12 11 10 14 14 N 1.34772 * 120.00073 * 180.02562 * 12 11 10 15 15 C 1.46496 * 120.00151 * 180.02562 * 14 12 11 16 16 H 1.09002 * 109.47021 * 324.99552 * 15 14 12 17 17 C 1.53005 * 109.47414 * 84.99440 * 15 14 12 18 18 C 1.52998 * 109.47249 * 119.99940 * 17 15 14 19 19 C 1.53001 * 109.46891 * 60.00061 * 18 17 15 20 20 C 1.53000 * 109.47516 * 300.00342 * 19 18 17 21 21 C 1.52997 * 109.47060 * 359.97438 * 20 19 18 22 22 C 1.53006 * 109.47127 * 300.00449 * 21 20 19 23 23 C 1.52997 * 109.47164 * 59.99836 * 22 21 20 24 24 H 0.96996 * 120.00179 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47064 * 60.00543 * 9 7 2 26 26 H 1.09003 * 109.47332 * 299.99924 * 9 7 2 27 27 H 1.08996 * 109.47604 * 59.99817 * 10 9 7 28 28 H 1.09001 * 109.47268 * 300.00126 * 10 9 7 29 29 H 1.09002 * 109.47109 * 59.99992 * 11 10 9 30 30 H 1.08992 * 109.46673 * 299.99996 * 11 10 9 31 31 H 0.96994 * 119.99727 * 359.97438 * 14 12 11 32 32 H 1.09002 * 109.46879 * 359.97438 * 17 15 14 33 33 H 1.09004 * 109.47259 * 240.00373 * 17 15 14 34 34 H 1.08993 * 109.46892 * 180.02562 * 18 17 15 35 35 H 1.09000 * 109.47026 * 179.97438 * 19 18 17 36 36 H 1.09004 * 109.46865 * 60.00027 * 19 18 17 37 37 H 1.09002 * 109.47398 * 119.99910 * 20 19 18 38 38 H 1.09001 * 109.47194 * 240.00091 * 20 19 18 39 39 H 1.08996 * 109.47853 * 180.02562 * 21 20 19 40 40 H 1.09000 * 109.47050 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.47002 * 299.99574 * 22 21 20 42 42 H 1.09001 * 109.46601 * 240.00089 * 23 22 21 43 43 H 1.08994 * 109.46976 * 120.00126 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4596 -6.1326 -0.0018 13 8 3.6521 -5.9109 -0.0022 14 7 2.0104 -7.4032 -0.0030 15 6 2.9624 -8.5167 -0.0030 16 1 3.8387 -8.2455 -0.5917 17 6 3.3885 -8.8236 1.4341 18 6 3.0106 -10.2649 1.7814 19 6 3.7208 -11.2233 0.8232 20 6 3.2949 -10.9164 -0.6139 21 6 2.3002 -9.7539 -0.6138 22 6 1.0701 -10.1352 0.2124 23 6 1.4962 -10.4420 1.6495 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8897 27 1 2.8720 -3.6043 0.8894 28 1 2.8720 -3.6043 -0.8905 29 1 0.8540 -5.0446 -0.8914 30 1 0.8534 -5.0451 0.8885 31 1 1.0568 -7.5804 -0.0030 32 1 2.8829 -8.1405 2.1167 33 1 4.4672 -8.6980 1.5279 34 1 3.3138 -10.4833 2.8053 35 1 3.4520 -12.2501 1.0709 36 1 4.7995 -11.0977 0.9170 37 1 4.1712 -10.6452 -1.2026 38 1 2.8233 -11.7975 -1.0491 39 1 1.9963 -9.5355 -1.6375 40 1 0.3617 -9.3068 0.2129 41 1 0.5990 -11.0165 -0.2229 42 1 1.2274 -11.4690 1.8967 43 1 0.9899 -9.7596 2.3321 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593994234.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:34 Heat of formation + Delta-G solvation = -100.655285 kcal Electronic energy + Delta-G solvation = -20268.060476 eV Core-core repulsion = 17310.136629 eV Total energy + Delta-G solvation = -2957.923847 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.84268 -40.09978 -36.16759 -35.35002 -34.02302 -32.30828 -31.72487 -30.90684 -29.21574 -25.87334 -23.62489 -23.49357 -22.81714 -22.06389 -21.16113 -18.74056 -18.06287 -17.66690 -17.41195 -17.17583 -16.53415 -16.51122 -16.13719 -15.30246 -14.96868 -14.57681 -14.23724 -13.81861 -13.59831 -13.32799 -13.06230 -12.97415 -12.96677 -12.92712 -12.91596 -12.80451 -12.60945 -12.51569 -12.39785 -11.68278 -11.56453 -11.46318 -11.26699 -11.00871 -10.94830 -10.72278 -10.61895 -10.54795 -9.98440 -8.20730 -6.30798 1.39101 1.40360 1.51970 1.68049 2.23915 2.41938 3.12089 3.54863 3.67110 3.74725 3.92441 4.16881 4.22236 4.25551 4.29264 4.36585 4.41049 4.42476 4.52180 4.54953 4.57901 4.68711 4.78180 4.83263 4.96692 5.09103 5.10300 5.12557 5.17665 5.19103 5.31661 5.37162 5.40209 5.45140 5.47322 5.52070 5.53159 5.63193 5.74942 5.86423 6.27159 6.59771 6.84549 7.31567 7.37937 8.90859 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.048668 B = 0.003110 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.187252 B = 9000.142589 C = 9172.188380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.050 0.950 9 C 0.026 3.974 10 C -0.082 4.082 11 C -0.131 4.131 12 C 0.515 3.485 13 O -0.585 6.585 14 N -0.714 5.714 15 C 0.149 3.851 16 H 0.059 0.941 17 C -0.123 4.123 18 C -0.083 4.083 19 C -0.114 4.114 20 C -0.110 4.110 21 C -0.088 4.088 22 C -0.114 4.114 23 C -0.113 4.113 24 H 0.265 0.735 25 H 0.001 0.999 26 H 0.001 0.999 27 H 0.038 0.962 28 H 0.039 0.961 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.412 0.588 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.111 -27.120 1.056 27.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.587 4.587 8 H 0.069 0.931 9 C -0.011 4.011 10 C -0.120 4.120 11 C -0.171 4.171 12 C 0.303 3.697 13 O -0.465 6.465 14 N -0.367 5.367 15 C 0.044 3.956 16 H 0.077 0.923 17 C -0.161 4.161 18 C -0.102 4.102 19 C -0.151 4.151 20 C -0.148 4.148 21 C -0.107 4.107 22 C -0.151 4.151 23 C -0.150 4.150 24 H 0.074 0.926 25 H 0.020 0.980 26 H 0.019 0.981 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.250 0.750 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.803 -26.868 1.055 26.949 hybrid contribution 0.083 1.268 0.046 1.271 sum 1.887 -25.600 1.101 25.693 Atomic orbital electron populations 1.70065 1.07489 1.27814 1.51569 1.25911 0.95844 1.03076 0.94656 0.85493 0.78619 0.78656 0.78572 1.19670 1.20219 1.19311 1.21695 0.93325 0.92858 1.50775 0.93136 1.19017 0.94180 0.92355 0.95524 1.21152 0.97614 0.93073 1.00162 1.21684 0.97957 0.91804 1.05617 1.21064 0.89366 0.84975 0.74332 1.90656 1.19054 1.85513 1.51284 1.46141 1.11067 1.04508 1.74964 1.20964 0.92005 0.86014 0.96584 0.92277 1.21992 1.00552 0.97596 0.95993 1.21056 0.96297 0.93297 0.99520 1.21571 0.99713 0.99436 0.94415 1.21510 0.98445 0.97692 0.97143 1.21272 0.96530 0.93351 0.99509 1.21568 0.96202 1.02148 0.95220 1.21554 0.94487 1.02211 0.96766 0.92629 0.98032 0.98073 0.94270 0.94196 0.87436 0.87538 0.74988 0.92740 0.92953 0.90816 0.90352 0.92395 0.92325 0.89781 0.90274 0.91678 0.89947 0.90512 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.96 45.67 29.54 68.60 2.03 47.70 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.55 -32.80 9.11 25.60 0.23 -32.56 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.08 -3.70 4.44 30.60 0.14 -3.56 16 11 C -0.13 -4.37 5.70 29.85 0.17 -4.20 16 12 C 0.51 16.85 7.79 87.66 0.68 17.53 16 13 O -0.59 -24.53 15.64 -3.05 -0.05 -24.58 16 14 N -0.71 -16.63 4.83 -442.46 -2.14 -18.77 16 15 C 0.15 3.24 2.41 45.01 0.11 3.35 16 16 H 0.06 1.62 7.58 -2.39 -0.02 1.60 16 17 C -0.12 -2.61 5.48 30.60 0.17 -2.45 16 18 C -0.08 -1.24 3.20 -10.78 -0.03 -1.27 16 19 C -0.11 -1.44 5.71 30.59 0.17 -1.26 16 20 C -0.11 -1.39 5.71 30.59 0.17 -1.21 16 21 C -0.09 -1.29 2.88 -10.78 -0.03 -1.32 16 22 C -0.11 -1.32 5.54 30.60 0.17 -1.15 16 23 C -0.11 -1.39 5.71 30.61 0.17 -1.21 16 24 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 25 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 26 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 27 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 28 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 29 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 31 H 0.41 7.10 6.87 -92.71 -0.64 6.47 16 32 H 0.05 1.32 7.85 -2.39 -0.02 1.30 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 35 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 0.72 6.51 -2.39 -0.02 0.71 16 41 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -71.78 333.77 3.19 -68.59 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.33 Total: 10.78 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: 2.74 Total: -27.11 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -1.85 Total: -75.38 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.05 Total: -24.58 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -71.78 3.19 -68.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593994234.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.065 kcal (2) G-P(sol) polarization free energy of solvation -71.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds