Wall clock time and date at job start Mon Mar 30 2020 06:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99927 * 2 1 4 4 H 1.48495 * 109.47229 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46906 * 299.99763 * 3 2 1 6 6 H 1.48496 * 109.47135 * 59.99677 * 3 2 1 7 7 C 1.37874 * 120.00386 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00154 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99648 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47330 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47130 * 179.97438 * 11 10 9 13 13 O 1.21275 * 120.00054 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99561 * 179.97438 * 12 11 10 15 15 C 1.46501 * 119.99541 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47120 * 184.56185 * 15 14 12 17 17 C 1.52998 * 109.47125 * 293.48949 * 16 15 14 18 18 C 1.53004 * 117.49830 * 4.83191 * 17 16 15 19 19 C 1.52999 * 117.50173 * 296.16947 * 17 16 15 20 20 C 1.52999 * 109.47438 * 173.48832 * 16 15 14 21 21 C 1.52999 * 117.50161 * 248.74870 * 20 16 15 22 22 C 1.53004 * 117.50108 * 180.08654 * 20 16 15 23 23 H 0.97004 * 119.99888 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47324 * 59.99514 * 9 7 2 25 25 H 1.09004 * 109.47173 * 299.99543 * 9 7 2 26 26 H 1.09005 * 109.47100 * 59.99486 * 10 9 7 27 27 H 1.09004 * 109.46951 * 299.99935 * 10 9 7 28 28 H 1.08997 * 109.47084 * 59.99768 * 11 10 9 29 29 H 1.09005 * 109.46864 * 300.00400 * 11 10 9 30 30 H 0.96994 * 120.00668 * 0.02562 * 14 12 11 31 31 H 1.09001 * 109.47382 * 64.55993 * 15 14 12 32 32 H 1.09002 * 109.47511 * 304.56137 * 15 14 12 33 33 H 1.09003 * 109.47208 * 53.48496 * 16 15 14 34 34 H 1.09002 * 115.55418 * 150.49747 * 17 16 15 35 35 H 1.08992 * 117.49858 * 359.97438 * 18 17 16 36 36 H 1.08994 * 117.49849 * 145.02141 * 18 17 16 37 37 H 1.08996 * 117.50049 * 214.97681 * 19 17 16 38 38 H 1.08998 * 117.49585 * 359.97438 * 19 17 16 39 39 H 1.09006 * 115.54715 * 34.41828 * 20 16 15 40 40 H 1.09000 * 117.49531 * 359.97438 * 21 20 16 41 41 H 1.09000 * 117.49672 * 145.02391 * 21 20 16 42 42 H 1.09004 * 117.49911 * 214.98054 * 22 20 16 43 43 H 1.09000 * 117.49485 * 359.97408 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0005 13 8 3.6521 -5.9108 0.0001 14 7 2.0105 -7.4031 0.0015 15 6 2.9625 -8.5166 0.0014 16 6 2.2010 -9.8387 -0.1121 17 6 1.3706 -10.0593 1.1538 18 6 1.3535 -8.9358 2.1922 19 6 2.1257 -10.2272 2.4738 20 6 3.1970 -10.9886 -0.2755 21 6 3.2350 -11.7036 -1.6276 22 6 2.6279 -12.4027 -0.4086 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8721 -3.6042 0.8905 27 1 2.8720 -3.6042 -0.8895 28 1 0.8534 -5.0451 -0.8885 29 1 0.8540 -5.0445 0.8914 30 1 1.0569 -7.5805 0.0022 31 1 3.5348 -8.5055 0.9291 32 1 3.6412 -8.4144 -0.8454 33 1 1.5404 -9.8043 -0.9785 34 1 0.4550 -10.6357 1.0210 35 1 1.9343 -8.0397 1.9737 36 1 0.4270 -8.7733 2.7428 37 1 1.7068 -10.9137 3.2095 38 1 3.2142 -10.1809 2.4403 39 1 4.1396 -10.8738 0.2598 40 1 2.5501 -11.3550 -2.4007 41 1 4.2025 -12.0595 -1.9817 42 1 3.1963 -13.2181 0.0388 43 1 1.5440 -12.5137 -0.3793 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593998815.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:17 Heat of formation + Delta-G solvation = -10.809555 kcal Electronic energy + Delta-G solvation = -19698.266582 eV Core-core repulsion = 16744.238738 eV Total energy + Delta-G solvation = -2954.027844 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.17533 -38.72615 -36.48806 -34.37667 -34.04114 -32.02012 -30.22252 -27.79636 -24.93878 -23.46218 -22.85431 -22.60357 -21.74943 -20.48007 -19.83022 -19.07130 -17.16549 -16.65258 -16.08358 -15.86637 -15.41225 -15.20433 -14.55197 -14.38945 -14.33883 -13.44198 -13.27334 -12.85190 -12.34733 -12.22199 -12.11605 -11.84488 -11.75797 -11.48464 -11.40558 -11.27531 -10.79816 -10.70894 -10.56684 -10.49998 -10.41681 -10.28145 -10.09700 -9.64451 -9.63975 -9.23037 -8.97179 -8.90382 -8.30131 -5.95664 -3.96798 2.97748 3.29092 3.35176 3.42372 3.44621 3.48491 3.62000 4.31238 4.44221 4.51061 4.52979 4.67823 4.76095 4.79404 4.95722 5.08793 5.19385 5.25845 5.33462 5.38734 5.40514 5.50520 5.58594 5.66175 5.71441 5.75987 5.77990 5.80571 5.87820 5.89917 6.00807 6.07176 6.30680 6.53221 6.76741 6.97285 7.20016 7.65903 7.74369 7.86942 8.05528 8.49290 8.51641 9.10695 9.67142 11.15913 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.041407 B = 0.002916 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.050798 B = 9598.553686 C = 9858.270791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.139 4.139 12 C 0.510 3.490 13 O -0.539 6.539 14 N -0.736 5.736 15 C 0.124 3.876 16 C -0.038 4.038 17 C -0.150 4.150 18 C -0.191 4.191 19 C -0.174 4.174 20 C -0.140 4.140 21 C -0.181 4.181 22 C -0.172 4.172 23 H 0.259 0.741 24 H 0.015 0.985 25 H 0.016 0.984 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.401 0.599 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.218 -26.042 0.780 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.179 4.179 12 C 0.298 3.702 13 O -0.415 6.415 14 N -0.391 5.391 15 C 0.000 4.000 16 C -0.057 4.057 17 C -0.168 4.168 18 C -0.228 4.228 19 C -0.211 4.211 20 C -0.159 4.159 21 C -0.218 4.218 22 C -0.209 4.209 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.236 0.764 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.121 0.879 35 H 0.131 0.869 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.958 -25.753 0.776 25.839 hybrid contribution -0.130 0.712 0.037 0.725 sum 1.828 -25.041 0.813 25.120 Atomic orbital electron populations 1.69976 1.06033 1.26394 1.51394 1.25024 0.94855 0.99254 0.95438 0.86543 0.80249 0.83784 0.77503 1.19683 1.21050 1.21054 1.21321 0.93234 0.91027 1.49883 0.92532 1.19139 0.93983 0.91496 0.97104 1.21440 0.98611 0.91580 1.01648 1.21844 0.98159 0.94156 1.03709 1.21265 0.90368 0.83767 0.74771 1.90676 1.17382 1.84767 1.48654 1.46269 1.10179 1.05701 1.76913 1.21273 0.91999 0.84455 1.02240 1.20532 0.95395 0.92692 0.97089 1.22239 1.00834 1.03644 0.90063 1.23473 1.02996 0.93996 1.02334 1.22865 0.99152 1.00505 0.98560 1.22102 1.00413 0.92660 1.00726 1.23065 1.02773 1.04507 0.91478 1.22879 1.00808 0.95086 1.02145 0.93148 0.96626 0.96610 0.92748 0.92749 0.89435 0.89396 0.76427 0.91730 0.91313 0.89993 0.87935 0.86943 0.88972 0.89175 0.88955 0.87663 0.88749 0.88839 0.88961 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.58 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.09 -2.08 4.44 -26.73 -0.12 -2.19 16 11 C -0.14 -2.31 5.70 -27.88 -0.16 -2.47 16 12 C 0.51 8.20 7.83 -10.99 -0.09 8.11 16 13 O -0.54 -10.91 15.98 5.56 0.09 -10.82 16 14 N -0.74 -8.52 3.55 -60.29 -0.21 -8.74 16 15 C 0.12 1.31 4.30 -4.04 -0.02 1.30 16 16 C -0.04 -0.30 2.43 -90.62 -0.22 -0.52 16 17 C -0.15 -1.12 5.35 -90.62 -0.48 -1.61 16 18 C -0.19 -1.67 8.71 -26.69 -0.23 -1.90 16 19 C -0.17 -1.38 9.45 -26.69 -0.25 -1.63 16 20 C -0.14 -1.02 4.64 -90.62 -0.42 -1.45 16 21 C -0.18 -1.23 10.18 -26.69 -0.27 -1.50 16 22 C -0.17 -1.10 9.88 -26.69 -0.26 -1.36 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 27 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 28 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.40 3.70 7.72 -40.82 -0.32 3.38 16 31 H 0.06 0.74 6.66 -51.93 -0.35 0.40 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 0.62 7.90 -51.93 -0.41 0.21 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.11 1.20 4.98 -51.93 -0.26 0.94 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.76 7.75 -51.93 -0.40 0.36 16 39 H 0.11 0.80 8.11 -51.93 -0.42 0.38 16 40 H 0.09 0.63 8.05 -51.93 -0.42 0.21 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 349.12 15.07 5.26 5.26 Total: -1.00 -32.78 349.12 -9.83 -42.61 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -7.60 Total: -0.15 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -3.08 Total: -18.76 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.52 Total: -35.31 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.78 -9.83 -42.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593998815.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.796 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds