Wall clock time and date at job start Mon Mar 30 2020 06:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99927 * 2 1 4 4 H 1.48495 * 109.47229 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46906 * 299.99763 * 3 2 1 6 6 H 1.48496 * 109.47135 * 59.99677 * 3 2 1 7 7 C 1.37874 * 120.00386 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00154 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99648 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47086 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47330 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47130 * 179.97438 * 11 10 9 13 13 O 1.21275 * 120.00054 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99561 * 179.97438 * 12 11 10 15 15 C 1.46501 * 119.99541 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47120 * 184.56185 * 15 14 12 17 17 C 1.52998 * 109.47125 * 293.48949 * 16 15 14 18 18 C 1.53004 * 117.49830 * 4.83191 * 17 16 15 19 19 C 1.52999 * 117.50173 * 296.16947 * 17 16 15 20 20 C 1.52999 * 109.47438 * 173.48832 * 16 15 14 21 21 C 1.52999 * 117.50161 * 248.74870 * 20 16 15 22 22 C 1.53004 * 117.50108 * 180.08654 * 20 16 15 23 23 H 0.97004 * 119.99888 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47324 * 59.99514 * 9 7 2 25 25 H 1.09004 * 109.47173 * 299.99543 * 9 7 2 26 26 H 1.09005 * 109.47100 * 59.99486 * 10 9 7 27 27 H 1.09004 * 109.46951 * 299.99935 * 10 9 7 28 28 H 1.08997 * 109.47084 * 59.99768 * 11 10 9 29 29 H 1.09005 * 109.46864 * 300.00400 * 11 10 9 30 30 H 0.96994 * 120.00668 * 0.02562 * 14 12 11 31 31 H 1.09001 * 109.47382 * 64.55993 * 15 14 12 32 32 H 1.09002 * 109.47511 * 304.56137 * 15 14 12 33 33 H 1.09003 * 109.47208 * 53.48496 * 16 15 14 34 34 H 1.09002 * 115.55418 * 150.49747 * 17 16 15 35 35 H 1.08992 * 117.49858 * 359.97438 * 18 17 16 36 36 H 1.08994 * 117.49849 * 145.02141 * 18 17 16 37 37 H 1.08996 * 117.50049 * 214.97681 * 19 17 16 38 38 H 1.08998 * 117.49585 * 359.97438 * 19 17 16 39 39 H 1.09006 * 115.54715 * 34.41828 * 20 16 15 40 40 H 1.09000 * 117.49531 * 359.97438 * 21 20 16 41 41 H 1.09000 * 117.49672 * 145.02391 * 21 20 16 42 42 H 1.09004 * 117.49911 * 214.98054 * 22 20 16 43 43 H 1.09000 * 117.49485 * 359.97408 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0005 13 8 3.6521 -5.9108 0.0001 14 7 2.0105 -7.4031 0.0015 15 6 2.9625 -8.5166 0.0014 16 6 2.2010 -9.8387 -0.1121 17 6 1.3706 -10.0593 1.1538 18 6 1.3535 -8.9358 2.1922 19 6 2.1257 -10.2272 2.4738 20 6 3.1970 -10.9886 -0.2755 21 6 3.2350 -11.7036 -1.6276 22 6 2.6279 -12.4027 -0.4086 23 1 -0.4850 0.8401 -0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6241 -2.5567 0.8904 26 1 2.8721 -3.6042 0.8905 27 1 2.8720 -3.6042 -0.8895 28 1 0.8534 -5.0451 -0.8885 29 1 0.8540 -5.0445 0.8914 30 1 1.0569 -7.5805 0.0022 31 1 3.5348 -8.5055 0.9291 32 1 3.6412 -8.4144 -0.8454 33 1 1.5404 -9.8043 -0.9785 34 1 0.4550 -10.6357 1.0210 35 1 1.9343 -8.0397 1.9737 36 1 0.4270 -8.7733 2.7428 37 1 1.7068 -10.9137 3.2095 38 1 3.2142 -10.1809 2.4403 39 1 4.1396 -10.8738 0.2598 40 1 2.5501 -11.3550 -2.4007 41 1 4.2025 -12.0595 -1.9817 42 1 3.1963 -13.2181 0.0388 43 1 1.5440 -12.5137 -0.3793 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593998815.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:16 Heat of formation + Delta-G solvation = -28.747807 kcal Electronic energy + Delta-G solvation = -19699.044443 eV Core-core repulsion = 16744.238738 eV Total energy + Delta-G solvation = -2954.805705 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.16747 -39.72115 -37.10230 -36.14489 -35.28608 -34.01437 -31.22142 -29.49805 -26.32569 -24.89003 -23.56942 -23.18761 -22.45360 -22.05049 -21.19266 -19.82070 -18.59256 -17.90662 -17.57120 -16.93338 -16.56960 -16.45601 -16.01642 -15.43524 -15.11602 -14.80079 -14.58034 -14.21700 -13.79079 -13.72805 -13.15333 -12.94683 -12.87105 -12.60062 -12.51649 -12.37530 -12.32962 -12.18119 -12.05082 -11.55131 -11.46752 -11.28442 -11.24326 -11.06408 -10.94791 -10.69694 -10.65621 -10.54550 -9.99423 -8.20365 -6.30174 1.39295 1.39538 1.53504 1.68026 2.22503 2.42247 2.85130 3.01008 3.12575 3.63806 3.82697 3.86576 3.98763 4.08308 4.16506 4.19939 4.24983 4.27407 4.31479 4.43356 4.59487 4.61527 4.82023 4.86008 4.87443 4.90471 4.98732 5.01655 5.11097 5.12084 5.16160 5.20118 5.29932 5.32230 5.34009 5.42412 5.49044 5.55758 5.76260 5.87485 6.27984 6.58758 6.85535 7.30384 7.38590 8.91396 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.041407 B = 0.002916 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.050798 B = 9598.553686 C = 9858.270791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.050 0.950 9 C 0.026 3.974 10 C -0.082 4.082 11 C -0.131 4.131 12 C 0.514 3.486 13 O -0.587 6.587 14 N -0.712 5.712 15 C 0.126 3.874 16 C -0.028 4.028 17 C -0.137 4.137 18 C -0.202 4.202 19 C -0.174 4.174 20 C -0.151 4.151 21 C -0.185 4.185 22 C -0.162 4.162 23 H 0.265 0.735 24 H 0.001 0.999 25 H 0.001 0.999 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.416 0.584 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.579 -27.276 0.685 27.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.068 0.932 9 C -0.011 4.011 10 C -0.121 4.121 11 C -0.170 4.170 12 C 0.302 3.698 13 O -0.467 6.467 14 N -0.365 5.365 15 C 0.003 3.997 16 C -0.047 4.047 17 C -0.155 4.155 18 C -0.239 4.239 19 C -0.211 4.211 20 C -0.169 4.169 21 C -0.222 4.222 22 C -0.199 4.199 23 H 0.074 0.926 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.254 0.746 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.138 0.862 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.103 0.897 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.282 -27.032 0.683 27.071 hybrid contribution 0.057 1.052 0.078 1.056 sum 1.339 -25.981 0.760 26.026 Atomic orbital electron populations 1.70073 1.07478 1.27726 1.51692 1.25906 0.95836 1.03064 0.94706 0.85450 0.78868 0.79007 0.78046 1.19285 1.20004 1.20024 1.21724 0.93315 0.92864 1.50580 0.93160 1.19022 0.94191 0.92352 0.95547 1.21157 0.97617 0.93099 1.00179 1.21681 0.97934 0.91702 1.05724 1.21051 0.89315 0.84914 0.74519 1.90664 1.19136 1.85565 1.51348 1.46023 1.11272 1.04537 1.74686 1.21320 0.91956 0.85324 1.01142 1.20454 0.95342 0.91092 0.97764 1.22272 1.01086 1.02700 0.89403 1.23399 1.03230 0.93613 1.03693 1.22902 0.98837 1.00104 0.99253 1.22047 1.00256 0.93149 1.01474 1.23135 1.03132 1.04445 0.91456 1.22939 1.01309 0.94313 1.01309 0.92648 0.98033 0.98026 0.94228 0.94217 0.87403 0.87389 0.74617 0.92764 0.92640 0.88976 0.86248 0.89054 0.88313 0.88076 0.89669 0.88294 0.88478 0.88622 0.88343 0.88067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.96 45.59 29.54 68.60 2.03 47.61 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 5 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.55 -32.56 9.11 25.60 0.23 -32.32 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.08 -3.68 4.44 30.59 0.14 -3.55 16 11 C -0.13 -4.27 5.70 29.85 0.17 -4.10 16 12 C 0.51 16.36 7.83 87.66 0.69 17.05 16 13 O -0.59 -24.26 15.98 -3.02 -0.05 -24.31 16 14 N -0.71 -15.71 3.55 -463.07 -1.64 -17.36 16 15 C 0.13 2.59 4.30 86.38 0.37 2.96 16 16 C -0.03 -0.38 2.43 -10.80 -0.03 -0.41 16 17 C -0.14 -1.72 5.35 -10.79 -0.06 -1.78 16 18 C -0.20 -3.23 8.71 30.62 0.27 -2.97 16 19 C -0.17 -2.48 9.45 30.62 0.29 -2.19 16 20 C -0.15 -1.96 4.64 -10.79 -0.05 -2.01 16 21 C -0.18 -2.18 10.18 30.62 0.31 -1.87 16 22 C -0.16 -1.68 9.88 30.62 0.30 -1.38 16 23 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 24 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 25 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 26 H 0.04 1.85 8.10 -2.38 -0.02 1.83 16 27 H 0.04 1.86 8.10 -2.38 -0.02 1.84 16 28 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 29 H 0.11 3.11 8.14 -2.38 -0.02 3.09 16 30 H 0.42 6.79 7.72 -92.71 -0.72 6.07 16 31 H 0.05 1.26 6.66 -2.39 -0.02 1.24 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.14 7.90 -2.39 -0.02 1.12 16 34 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.09 1.87 4.98 -2.39 -0.01 1.86 16 36 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.34 7.75 -2.39 -0.02 1.32 16 39 H 0.10 1.42 8.11 -2.38 -0.02 1.40 16 40 H 0.10 1.10 8.05 -2.39 -0.02 1.08 16 41 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -71.18 349.12 4.12 -67.06 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.26 Total: 13.86 kcal Atomic # 6 Polarization: -33.64 SS G_CDS: 3.24 Total: -30.40 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -1.36 Total: -73.83 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.05 Total: -24.31 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -71.18 4.12 -67.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593998815.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.311 kcal (2) G-P(sol) polarization free energy of solvation -71.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds