Wall clock time and date at job start Mon Mar 30 2020 06:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00118 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00179 * 3 2 1 6 6 H 1.48498 * 109.46997 * 149.99989 * 3 2 1 7 7 C 1.37885 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.47238 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99507 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00020 * 180.02562 * 12 11 10 15 15 C 1.46496 * 119.99544 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47059 * 180.02562 * 15 14 12 17 17 C 1.52995 * 112.85136 * 180.02562 * 16 15 14 18 18 C 1.52997 * 117.50036 * 18.28763 * 17 16 15 19 19 C 1.53001 * 117.49794 * 309.66027 * 17 16 15 20 20 C 1.53781 * 113.61525 * 48.80030 * 16 15 14 21 21 C 1.53958 * 87.02279 * 220.05337 * 20 16 15 22 22 C 1.53785 * 113.61141 * 311.19316 * 16 15 14 23 23 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.46894 * 60.00093 * 9 7 2 25 25 H 1.08996 * 109.46805 * 300.00243 * 9 7 2 26 26 H 1.09001 * 109.47372 * 60.00128 * 10 9 7 27 27 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 28 28 H 1.09001 * 109.46832 * 59.99979 * 11 10 9 29 29 H 1.09000 * 109.47611 * 300.00276 * 11 10 9 30 30 H 0.96994 * 119.99756 * 0.02562 * 14 12 11 31 31 H 1.08996 * 109.47366 * 299.99598 * 15 14 12 32 32 H 1.08992 * 109.47635 * 60.00246 * 15 14 12 33 33 H 1.09004 * 115.54943 * 163.99813 * 17 16 15 34 34 H 1.08994 * 117.50020 * 359.97438 * 18 17 16 35 35 H 1.09002 * 117.49881 * 145.02045 * 18 17 16 36 36 H 1.09005 * 117.49983 * 214.97908 * 19 17 16 37 37 H 1.08998 * 117.49942 * 0.02562 * 19 17 16 38 38 H 1.09002 * 113.61161 * 334.56995 * 20 16 15 39 39 H 1.08997 * 113.61265 * 105.47150 * 20 16 15 40 40 H 1.08997 * 113.53378 * 270.81204 * 21 20 16 41 41 H 1.09000 * 113.66810 * 139.93084 * 21 20 16 42 42 H 1.08998 * 113.61944 * 254.52973 * 22 16 15 43 43 H 1.08999 * 113.61190 * 25.43610 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4800 -4.9871 0.0001 12 6 2.4592 -6.1327 -0.0005 13 8 3.6516 -5.9111 -0.0009 14 7 2.0098 -7.4033 -0.0006 15 6 2.9618 -8.5168 -0.0007 16 6 2.1968 -9.8418 -0.0015 17 6 3.1206 -11.0613 -0.0009 18 6 4.5740 -10.8464 0.4261 19 6 4.2385 -11.1012 -1.0449 20 6 1.0854 -9.9109 -1.0621 21 6 0.2278 -10.6245 -0.0011 22 6 1.0847 -9.9116 1.0584 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8902 25 1 0.6246 -2.5570 0.8896 26 1 2.8717 -3.6045 0.8895 27 1 2.8717 -3.6044 -0.8906 28 1 0.8530 -5.0450 -0.8897 29 1 0.8535 -5.0446 0.8903 30 1 1.0562 -7.5804 -0.0007 31 1 3.5884 -8.4591 -0.8906 32 1 3.5884 -8.4592 0.8892 33 1 2.6508 -12.0070 0.2697 34 1 4.8721 -9.8361 0.7062 35 1 5.0607 -11.6506 0.9779 36 1 4.5044 -12.0731 -1.4607 37 1 4.3159 -10.2584 -1.7318 38 1 0.6975 -8.9344 -1.3522 39 1 1.3361 -10.5390 -1.9169 40 1 0.3469 -11.7080 -0.0021 41 1 -0.8165 -10.3125 -0.0003 42 1 1.3347 -10.5403 1.9130 43 1 0.6966 -8.9354 1.3490 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593998951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:46 Heat of formation + Delta-G solvation = -15.812659 kcal Electronic energy + Delta-G solvation = -19863.820111 eV Core-core repulsion = 16909.575316 eV Total energy + Delta-G solvation = -2954.244795 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.78511 -38.96431 -36.22626 -34.29522 -33.97588 -32.00266 -29.00409 -27.31181 -26.01167 -24.48921 -23.29913 -22.55707 -22.02325 -20.56015 -19.70200 -18.23199 -17.03092 -16.56702 -16.10287 -15.55617 -15.47598 -14.98872 -14.42822 -14.29858 -14.14466 -13.95812 -13.14120 -13.13064 -12.77688 -12.26101 -12.11027 -11.99625 -11.76189 -11.64086 -11.28099 -11.00471 -10.86659 -10.78428 -10.72102 -10.57746 -10.51055 -10.22997 -10.03940 -9.65735 -9.64640 -9.23993 -8.98975 -8.93012 -8.29960 -5.95737 -3.96928 2.97637 3.33002 3.36332 3.41975 3.42598 3.47216 4.10091 4.31109 4.34863 4.51215 4.55218 4.67139 4.70461 4.83660 4.89344 5.17132 5.31640 5.35944 5.40364 5.44649 5.47234 5.56321 5.58706 5.64460 5.66209 5.74623 5.75633 5.80078 5.83455 5.88507 6.06250 6.12495 6.29604 6.55095 6.76079 6.96657 7.19441 7.63730 7.73737 7.86524 8.05276 8.48918 8.51006 9.10239 9.66890 11.15818 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.038507 B = 0.003052 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.972776 B = 9171.813109 C = 9672.396147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.139 4.139 12 C 0.511 3.489 13 O -0.539 6.539 14 N -0.739 5.739 15 C 0.132 3.868 16 C -0.063 4.063 17 C -0.126 4.126 18 C -0.182 4.182 19 C -0.178 4.178 20 C -0.133 4.133 21 C -0.140 4.140 22 C -0.133 4.133 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.398 0.602 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.174 -25.930 -0.155 25.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.179 4.179 12 C 0.299 3.701 13 O -0.415 6.415 14 N -0.394 5.394 15 C 0.008 3.992 16 C -0.063 4.063 17 C -0.144 4.144 18 C -0.219 4.219 19 C -0.215 4.215 20 C -0.171 4.171 21 C -0.178 4.178 22 C -0.171 4.171 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.233 0.767 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.906 -25.638 -0.151 25.709 hybrid contribution -0.052 0.751 -0.011 0.753 sum 1.854 -24.887 -0.162 24.957 Atomic orbital electron populations 1.69966 1.06038 1.26507 1.51277 1.25024 0.94859 0.99248 0.95414 0.86590 0.79908 0.83416 0.78095 1.20684 1.21273 1.19830 1.21284 0.93200 0.91032 1.50057 0.92579 1.19131 0.93974 0.91477 0.97099 1.21439 0.98620 0.91545 1.01669 1.21845 0.98165 0.94190 1.03667 1.21256 0.90388 0.83708 0.74725 1.90672 1.17370 1.84772 1.48640 1.46236 1.10039 1.05765 1.77325 1.21137 0.91628 0.84355 1.02082 1.21504 0.93699 0.93069 0.98025 1.21857 0.89597 0.97869 1.05083 1.23094 0.97526 1.03498 0.97746 1.22976 1.02828 1.03189 0.92462 1.23064 0.95857 1.01216 0.96927 1.22848 0.98708 0.99822 0.96403 1.23035 0.95865 1.01294 0.96867 0.93090 0.96622 0.96620 0.92726 0.92729 0.89448 0.89429 0.76661 0.91631 0.91380 0.87422 0.88101 0.88780 0.88808 0.88542 0.89682 0.91027 0.90227 0.91260 0.91074 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.22 29.54 -169.99 -5.02 17.19 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.09 -2.09 4.44 -26.73 -0.12 -2.20 16 11 C -0.14 -2.34 5.70 -27.88 -0.16 -2.49 16 12 C 0.51 8.39 7.83 -10.98 -0.09 8.30 16 13 O -0.54 -11.04 15.98 5.56 0.09 -10.95 16 14 N -0.74 -8.89 4.71 -60.30 -0.28 -9.17 16 15 C 0.13 1.46 4.05 -4.04 -0.02 1.44 16 16 C -0.06 -0.51 1.14 -153.69 -0.17 -0.69 16 17 C -0.13 -0.94 5.16 -90.62 -0.47 -1.41 16 18 C -0.18 -1.43 9.80 -26.73 -0.26 -1.69 16 19 C -0.18 -1.34 9.94 -26.73 -0.27 -1.61 16 20 C -0.13 -1.01 6.97 -25.83 -0.18 -1.19 16 21 C -0.14 -0.93 7.80 -25.82 -0.20 -1.13 16 22 C -0.13 -1.00 6.96 -25.91 -0.18 -1.18 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 27 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 28 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.40 3.80 5.80 -40.82 -0.24 3.56 16 31 H 0.07 0.80 7.09 -51.93 -0.37 0.43 16 32 H 0.07 0.83 6.86 -51.93 -0.36 0.47 16 33 H 0.11 0.71 7.90 -51.93 -0.41 0.30 16 34 H 0.10 0.91 6.20 -51.93 -0.32 0.59 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 0.81 7.23 -51.93 -0.38 0.43 16 38 H 0.08 0.67 6.63 -51.93 -0.34 0.33 16 39 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 40 H 0.08 0.48 7.94 -51.93 -0.41 0.06 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 43 H 0.09 0.67 6.63 -51.93 -0.34 0.33 16 LS Contribution 341.89 15.07 5.15 5.15 Total: -1.00 -32.92 341.89 -9.34 -42.26 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.35 Total: -0.50 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -2.66 Total: -17.39 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.45 Total: -35.76 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.92 -9.34 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593998951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.444 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds