Wall clock time and date at job start Mon Mar 30 2020 06:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00118 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00179 * 3 2 1 6 6 H 1.48498 * 109.46997 * 149.99989 * 3 2 1 7 7 C 1.37885 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99816 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.47238 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99507 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00020 * 180.02562 * 12 11 10 15 15 C 1.46496 * 119.99544 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.47059 * 180.02562 * 15 14 12 17 17 C 1.52995 * 112.85136 * 180.02562 * 16 15 14 18 18 C 1.52997 * 117.50036 * 18.28763 * 17 16 15 19 19 C 1.53001 * 117.49794 * 309.66027 * 17 16 15 20 20 C 1.53781 * 113.61525 * 48.80030 * 16 15 14 21 21 C 1.53958 * 87.02279 * 220.05337 * 20 16 15 22 22 C 1.53785 * 113.61141 * 311.19316 * 16 15 14 23 23 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 24 24 H 1.08992 * 109.46894 * 60.00093 * 9 7 2 25 25 H 1.08996 * 109.46805 * 300.00243 * 9 7 2 26 26 H 1.09001 * 109.47372 * 60.00128 * 10 9 7 27 27 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 28 28 H 1.09001 * 109.46832 * 59.99979 * 11 10 9 29 29 H 1.09000 * 109.47611 * 300.00276 * 11 10 9 30 30 H 0.96994 * 119.99756 * 0.02562 * 14 12 11 31 31 H 1.08996 * 109.47366 * 299.99598 * 15 14 12 32 32 H 1.08992 * 109.47635 * 60.00246 * 15 14 12 33 33 H 1.09004 * 115.54943 * 163.99813 * 17 16 15 34 34 H 1.08994 * 117.50020 * 359.97438 * 18 17 16 35 35 H 1.09002 * 117.49881 * 145.02045 * 18 17 16 36 36 H 1.09005 * 117.49983 * 214.97908 * 19 17 16 37 37 H 1.08998 * 117.49942 * 0.02562 * 19 17 16 38 38 H 1.09002 * 113.61161 * 334.56995 * 20 16 15 39 39 H 1.08997 * 113.61265 * 105.47150 * 20 16 15 40 40 H 1.08997 * 113.53378 * 270.81204 * 21 20 16 41 41 H 1.09000 * 113.66810 * 139.93084 * 21 20 16 42 42 H 1.08998 * 113.61944 * 254.52973 * 22 16 15 43 43 H 1.08999 * 113.61190 * 25.43610 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4800 -4.9871 0.0001 12 6 2.4592 -6.1327 -0.0005 13 8 3.6516 -5.9111 -0.0009 14 7 2.0098 -7.4033 -0.0006 15 6 2.9618 -8.5168 -0.0007 16 6 2.1968 -9.8418 -0.0015 17 6 3.1206 -11.0613 -0.0009 18 6 4.5740 -10.8464 0.4261 19 6 4.2385 -11.1012 -1.0449 20 6 1.0854 -9.9109 -1.0621 21 6 0.2278 -10.6245 -0.0011 22 6 1.0847 -9.9116 1.0584 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8902 25 1 0.6246 -2.5570 0.8896 26 1 2.8717 -3.6045 0.8895 27 1 2.8717 -3.6044 -0.8906 28 1 0.8530 -5.0450 -0.8897 29 1 0.8535 -5.0446 0.8903 30 1 1.0562 -7.5804 -0.0007 31 1 3.5884 -8.4591 -0.8906 32 1 3.5884 -8.4592 0.8892 33 1 2.6508 -12.0070 0.2697 34 1 4.8721 -9.8361 0.7062 35 1 5.0607 -11.6506 0.9779 36 1 4.5044 -12.0731 -1.4607 37 1 4.3159 -10.2584 -1.7318 38 1 0.6975 -8.9344 -1.3522 39 1 1.3361 -10.5390 -1.9169 40 1 0.3469 -11.7080 -0.0021 41 1 -0.8165 -10.3125 -0.0003 42 1 1.3347 -10.5403 1.9130 43 1 0.6966 -8.9354 1.3490 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593998951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:45 Heat of formation + Delta-G solvation = -34.596950 kcal Electronic energy + Delta-G solvation = -19864.634659 eV Core-core repulsion = 16909.575316 eV Total energy + Delta-G solvation = -2955.059343 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.59859 -40.17334 -36.85052 -36.15994 -35.20442 -34.01811 -30.40744 -28.73444 -26.60614 -25.93386 -24.59094 -23.18456 -22.70738 -22.21562 -21.11393 -19.02027 -18.55561 -17.90004 -17.38279 -16.88023 -16.51755 -16.17431 -15.93636 -15.55954 -15.05709 -14.70507 -14.47541 -14.36196 -14.10363 -13.74663 -13.50639 -13.11345 -12.73062 -12.69227 -12.59513 -12.51222 -12.39495 -12.28482 -11.59555 -11.56367 -11.48512 -11.43831 -11.34089 -11.27220 -10.86056 -10.78943 -10.67977 -10.54525 -10.05250 -8.20565 -6.30467 1.39396 1.40550 1.52174 1.64656 2.20283 2.42032 2.81116 3.12376 3.45994 3.66771 3.73461 3.89383 3.96371 3.98686 4.11622 4.18401 4.21976 4.26233 4.30557 4.62591 4.66277 4.74210 4.83696 4.85353 4.85788 4.90773 4.96731 5.03580 5.10347 5.14407 5.17826 5.18766 5.22924 5.26105 5.36867 5.51025 5.54629 5.56870 5.75258 5.86659 6.27355 6.53020 6.84886 7.25998 7.38153 8.91011 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.038507 B = 0.003052 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.972776 B = 9171.813109 C = 9672.396147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.050 0.950 9 C 0.026 3.974 10 C -0.082 4.082 11 C -0.131 4.131 12 C 0.514 3.486 13 O -0.586 6.586 14 N -0.716 5.716 15 C 0.133 3.867 16 C -0.061 4.061 17 C -0.120 4.120 18 C -0.190 4.190 19 C -0.179 4.179 20 C -0.135 4.135 21 C -0.130 4.130 22 C -0.134 4.134 23 H 0.265 0.735 24 H 0.001 0.999 25 H 0.002 0.998 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.413 0.587 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.125 0.875 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.549 -27.194 -0.136 27.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.069 0.931 9 C -0.011 4.011 10 C -0.121 4.121 11 C -0.170 4.170 12 C 0.302 3.698 13 O -0.466 6.466 14 N -0.370 5.370 15 C 0.009 3.991 16 C -0.061 4.061 17 C -0.138 4.138 18 C -0.227 4.227 19 C -0.215 4.215 20 C -0.172 4.172 21 C -0.167 4.167 22 C -0.172 4.172 23 H 0.074 0.926 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.252 0.748 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.143 0.857 34 H 0.101 0.899 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.242 -26.946 -0.134 26.974 hybrid contribution 0.132 1.115 -0.019 1.123 sum 1.374 -25.830 -0.153 25.867 Atomic orbital electron populations 1.70066 1.07486 1.27801 1.51571 1.25908 0.95841 1.03064 0.94669 0.85497 0.78627 0.78680 0.78560 1.19693 1.20231 1.19309 1.21699 0.93330 0.92857 1.50764 0.93129 1.19014 0.94176 0.92320 0.95563 1.21159 0.97642 0.93042 1.00220 1.21686 0.97911 0.91672 1.05756 1.21090 0.89397 0.84855 0.74453 1.90661 1.19119 1.85558 1.51242 1.46009 1.11169 1.04660 1.75179 1.21183 0.91590 0.85430 1.00883 1.21531 0.93804 0.91606 0.99190 1.21916 0.89210 0.98030 1.04656 1.23100 0.98276 1.03001 0.98297 1.23005 1.02977 1.03468 0.92093 1.23085 0.95633 1.01355 0.97139 1.22819 0.98738 1.00283 0.94872 1.23059 0.95564 1.01465 0.97105 0.92635 0.98014 0.98011 0.94192 0.94180 0.87358 0.87330 0.74829 0.92953 0.92622 0.85710 0.89881 0.87499 0.87308 0.89811 0.90052 0.90724 0.89107 0.90521 0.90591 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.55 -32.67 9.11 25.60 0.23 -32.43 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 9 C 0.03 1.41 4.97 29.85 0.15 1.56 16 10 C -0.08 -3.70 4.44 30.59 0.14 -3.56 16 11 C -0.13 -4.30 5.70 29.85 0.17 -4.13 16 12 C 0.51 16.74 7.83 87.66 0.69 17.42 16 13 O -0.59 -24.55 15.98 -3.02 -0.05 -24.59 16 14 N -0.72 -16.56 4.71 -463.07 -2.18 -18.74 16 15 C 0.13 2.90 4.05 86.38 0.35 3.25 16 16 C -0.06 -0.90 1.14 -51.65 -0.06 -0.96 16 17 C -0.12 -1.58 5.16 -10.80 -0.06 -1.63 16 18 C -0.19 -2.83 9.80 30.60 0.30 -2.53 16 19 C -0.18 -2.50 9.94 30.60 0.30 -2.19 16 20 C -0.13 -1.75 6.97 31.18 0.22 -1.53 16 21 C -0.13 -1.34 7.80 31.18 0.24 -1.09 16 22 C -0.13 -1.72 6.96 31.12 0.22 -1.50 16 23 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 24 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 25 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 27 H 0.04 1.88 8.10 -2.38 -0.02 1.86 16 28 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 29 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.41 7.11 5.80 -92.71 -0.54 6.57 16 31 H 0.05 1.30 7.09 -2.39 -0.02 1.29 16 32 H 0.06 1.38 6.86 -2.39 -0.02 1.36 16 33 H 0.13 1.27 7.90 -2.38 -0.02 1.26 16 34 H 0.08 1.54 6.20 -2.39 -0.01 1.53 16 35 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.08 1.39 7.23 -2.39 -0.02 1.37 16 38 H 0.08 1.11 6.63 -2.39 -0.02 1.10 16 39 H 0.07 0.95 8.10 -2.39 -0.02 0.93 16 40 H 0.09 0.77 7.94 -2.39 -0.02 0.75 16 41 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.08 0.92 8.10 -2.39 -0.02 0.91 16 43 H 0.08 1.11 6.63 -2.39 -0.02 1.09 16 Total: -1.00 -71.40 341.89 3.87 -67.53 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.44 Total: 13.37 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 3.35 Total: -28.70 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -1.90 Total: -75.19 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.05 Total: -24.59 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -71.40 3.87 -67.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593998951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.934 kcal (2) G-P(sol) polarization free energy of solvation -71.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds