Wall clock time and date at job start Mon Mar 30 2020 06:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00259 * 2 1 4 4 H 1.48495 * 109.47160 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46807 * 299.99727 * 3 2 1 6 6 H 1.48499 * 109.47080 * 59.99866 * 3 2 1 7 7 C 1.37875 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99998 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00148 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47536 * 180.02562 * 9 7 2 11 11 C 1.52993 * 109.47463 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47412 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99880 * 359.97438 * 12 11 10 14 14 N 1.34781 * 120.00112 * 180.02562 * 12 11 10 15 15 C 1.46501 * 119.99881 * 179.97438 * 14 12 11 16 16 C 1.52995 * 109.46990 * 180.02562 * 15 14 12 17 17 C 1.56128 * 116.03407 * 297.90558 * 16 15 14 18 18 C 1.54578 * 104.67380 * 200.01691 * 17 16 15 19 19 C 1.55919 * 104.64695 * 359.97438 * 18 17 16 20 20 C 1.55928 * 104.49868 * 289.71940 * 19 18 17 21 21 C 1.54719 * 104.64266 * 70.32118 * 20 19 18 22 22 C 1.56948 * 100.65332 * 33.77681 * 19 18 17 23 23 H 0.96998 * 119.99855 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47048 * 59.99940 * 9 7 2 25 25 H 1.08999 * 109.47213 * 299.99995 * 9 7 2 26 26 H 1.09002 * 109.47047 * 59.99883 * 10 9 7 27 27 H 1.08999 * 109.46819 * 300.00179 * 10 9 7 28 28 H 1.09002 * 109.46983 * 59.99968 * 11 10 9 29 29 H 1.08999 * 109.47351 * 299.99978 * 11 10 9 30 30 H 0.96994 * 119.99762 * 0.02562 * 14 12 11 31 31 H 1.09002 * 109.47285 * 59.99887 * 15 14 12 32 32 H 1.09008 * 109.47038 * 300.00124 * 15 14 12 33 33 H 1.09004 * 110.40410 * 81.20703 * 17 16 15 34 34 H 1.08995 * 110.46215 * 318.86204 * 17 16 15 35 35 H 1.09001 * 110.40465 * 241.18153 * 18 17 16 36 36 H 1.09003 * 110.49579 * 118.82016 * 18 17 16 37 37 H 1.09005 * 115.92370 * 160.03212 * 19 18 17 38 38 H 1.09002 * 110.40561 * 189.07170 * 20 19 18 39 39 H 1.09007 * 110.40171 * 311.48804 * 20 19 18 40 40 H 1.09001 * 110.44155 * 241.19102 * 21 20 19 41 41 H 1.09002 * 110.45735 * 118.82134 * 21 20 19 42 42 H 1.09002 * 112.02663 * 63.17522 * 22 19 18 43 43 H 1.09000 * 112.02645 * 189.62084 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 2.4594 -6.1326 0.0007 13 8 3.6518 -5.9110 0.0002 14 7 2.0101 -7.4033 0.0009 15 6 2.9621 -8.5168 0.0009 16 6 2.1970 -9.8418 0.0004 17 6 1.2854 -10.1072 1.2398 18 6 1.0673 -11.6375 1.2449 19 6 1.8658 -12.1537 0.0092 20 6 1.0543 -11.6440 -1.2208 21 6 1.2735 -10.1125 -1.2266 22 6 3.0694 -11.1464 0.0002 23 1 -0.4850 0.8400 -0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8718 -3.6044 0.8895 27 1 2.8718 -3.6044 -0.8905 28 1 0.8532 -5.0450 -0.8897 29 1 0.8538 -5.0446 0.8903 30 1 1.0565 -7.5804 0.0002 31 1 3.5888 -8.4590 0.8909 32 1 3.5888 -8.4591 -0.8892 33 1 0.3334 -9.5880 1.1294 34 1 1.7856 -9.7915 2.1553 35 1 0.0080 -11.8707 1.1372 36 1 1.4607 -12.0760 2.1620 37 1 2.1240 -13.2127 0.0172 38 1 1.4394 -12.0859 -2.1398 39 1 -0.0039 -11.8766 -1.1007 40 1 0.3233 -9.5914 -1.1094 41 1 1.7654 -9.8016 -2.1483 42 1 3.6795 -11.2303 0.8996 43 1 3.6707 -11.2360 -0.9046 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594002364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:18 Heat of formation + Delta-G solvation = -88.763725 kcal Electronic energy + Delta-G solvation = -19807.033614 eV Core-core repulsion = 16849.625423 eV Total energy + Delta-G solvation = -2957.408191 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.43688 -40.40565 -36.23043 -35.69684 -34.02530 -31.35915 -31.32111 -29.56400 -28.77552 -26.56988 -25.06664 -23.02268 -22.29304 -21.35724 -20.48145 -19.35190 -18.59978 -17.84602 -16.96007 -16.88887 -16.48952 -16.23484 -15.91435 -15.81523 -15.22069 -14.72013 -14.21986 -14.06029 -13.76731 -13.44994 -13.29902 -13.08443 -12.63777 -12.59339 -12.52446 -12.41697 -12.20893 -12.03878 -11.82822 -11.72810 -11.70688 -11.55566 -11.46870 -11.26408 -11.19331 -10.76477 -10.71658 -10.54770 -10.06126 -8.20530 -6.30372 1.39321 1.39507 1.53536 1.67300 2.21648 2.42152 3.12427 3.47655 3.48849 3.54759 3.93267 4.00465 4.20119 4.24147 4.26933 4.27881 4.43920 4.44149 4.57329 4.60295 4.70461 4.80039 4.84086 4.89232 4.91626 4.98052 5.11369 5.11576 5.13119 5.19455 5.20399 5.23502 5.27344 5.41440 5.43248 5.45737 5.53084 5.55890 5.75829 5.87167 6.27721 6.57325 6.85310 7.28935 7.38390 8.91284 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.051555 B = 0.002803 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.974054 B = 9988.164339 C =10173.535200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.050 0.950 9 C 0.026 3.974 10 C -0.082 4.082 11 C -0.130 4.130 12 C 0.515 3.485 13 O -0.587 6.587 14 N -0.714 5.714 15 C 0.152 3.848 16 C -0.088 4.088 17 C -0.115 4.115 18 C -0.118 4.118 19 C -0.099 4.099 20 C -0.117 4.117 21 C -0.115 4.115 22 C -0.114 4.114 23 H 0.265 0.735 24 H 0.001 0.999 25 H 0.001 0.999 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.414 0.586 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.111 0.889 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.377 -28.051 0.002 28.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.069 0.931 9 C -0.011 4.011 10 C -0.121 4.121 11 C -0.170 4.170 12 C 0.303 3.697 13 O -0.467 6.467 14 N -0.367 5.367 15 C 0.028 3.972 16 C -0.089 4.089 17 C -0.153 4.153 18 C -0.155 4.155 19 C -0.117 4.117 20 C -0.154 4.154 21 C -0.152 4.152 22 C -0.152 4.152 23 H 0.074 0.926 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.250 0.750 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.129 0.871 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.306 -27.803 0.004 27.804 hybrid contribution -0.040 1.120 0.008 1.121 sum 0.266 -26.683 0.012 26.684 Atomic orbital electron populations 1.70071 1.07489 1.27736 1.51686 1.25911 0.95840 1.03081 0.94696 0.85444 0.78869 0.78976 0.78045 1.19269 1.20018 1.20009 1.21726 0.93329 0.92848 1.50593 0.93129 1.19024 0.94197 0.92366 0.95545 1.21157 0.97628 0.93046 1.00233 1.21675 0.97931 0.91713 1.05696 1.21062 0.89349 0.84863 0.74457 1.90663 1.19092 1.85547 1.51374 1.45841 1.11178 1.04581 1.75095 1.20806 0.91294 0.83840 1.01254 1.23002 0.96188 0.92638 0.97027 1.22663 0.99053 0.96943 0.96624 1.22608 1.00407 0.94398 0.98129 1.23571 0.94500 0.98702 0.94950 1.22619 1.00328 0.94366 0.98122 1.22640 0.98955 0.96930 0.96688 1.23539 0.96802 0.93032 1.01837 0.92645 0.98028 0.98043 0.94175 0.94165 0.87407 0.87422 0.74975 0.92431 0.92461 0.91241 0.92424 0.91084 0.91562 0.87096 0.91531 0.91049 0.91216 0.92382 0.91078 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.96 45.60 29.54 68.60 2.03 47.63 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 7 C -0.55 -32.59 9.11 25.60 0.23 -32.36 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.08 -3.70 4.44 30.59 0.14 -3.56 16 11 C -0.13 -4.30 5.70 29.85 0.17 -4.13 16 12 C 0.51 16.63 7.83 87.66 0.69 17.32 16 13 O -0.59 -24.41 15.98 -3.04 -0.05 -24.46 16 14 N -0.71 -16.31 5.38 -463.05 -2.49 -18.80 16 15 C 0.15 3.21 5.51 86.38 0.48 3.69 16 16 C -0.09 -1.31 1.01 -48.69 -0.05 -1.36 16 17 C -0.12 -1.55 5.64 32.22 0.18 -1.36 16 18 C -0.12 -1.28 6.21 32.14 0.20 -1.08 16 19 C -0.10 -1.03 5.19 -7.38 -0.04 -1.06 16 20 C -0.12 -1.26 6.21 32.19 0.20 -1.06 16 21 C -0.11 -1.53 5.66 32.20 0.18 -1.35 16 22 C -0.11 -1.48 6.11 33.36 0.20 -1.28 16 23 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 24 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 25 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 26 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 27 H 0.04 1.88 8.10 -2.39 -0.02 1.87 16 28 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 29 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 30 H 0.41 7.03 8.19 -92.71 -0.76 6.27 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.07 0.87 7.84 -2.39 -0.02 0.85 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.70 7.83 -2.39 -0.02 0.68 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 0.70 7.83 -2.38 -0.02 0.68 16 40 H 0.07 0.87 7.84 -2.39 -0.02 0.85 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -71.08 342.20 3.17 -67.92 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.20 Total: 9.69 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 3.19 Total: -25.46 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -2.21 Total: -75.32 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.05 Total: -24.46 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -71.08 3.17 -67.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594002364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.847 kcal (2) G-P(sol) polarization free energy of solvation -71.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds