Wall clock time and date at job start Mon Mar 30 2020 06:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99746 * 2 1 4 4 H 1.48500 * 109.47366 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.47029 * 299.99541 * 3 2 1 6 6 H 1.48496 * 109.47276 * 59.99289 * 3 2 1 7 7 C 1.37874 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00022 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99735 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46763 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46603 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.46751 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00088 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00144 * 179.97438 * 12 11 10 15 15 C 1.46502 * 120.00319 * 180.02562 * 14 12 11 16 16 C 1.52951 * 109.41364 * 205.00669 * 15 14 12 17 17 C 1.53179 * 109.44734 * 176.90754 * 16 15 14 18 18 C 1.53147 * 108.88655 * 56.56620 * 17 16 15 19 19 C 1.52841 * 117.67569 * 91.49469 * 18 17 16 20 20 C 1.52806 * 117.74825 * 160.37823 * 18 17 16 21 21 C 1.53147 * 115.00654 * 306.06267 * 18 17 16 22 22 C 1.52934 * 109.41289 * 84.64654 * 15 14 12 23 23 H 0.96995 * 119.99915 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47515 * 59.99248 * 9 7 2 25 25 H 1.08997 * 109.46896 * 299.99168 * 9 7 2 26 26 H 1.08994 * 109.47078 * 59.99902 * 10 9 7 27 27 H 1.08997 * 109.46997 * 299.99427 * 10 9 7 28 28 H 1.08994 * 109.47376 * 60.00216 * 11 10 9 29 29 H 1.08997 * 109.47083 * 299.99505 * 11 10 9 30 30 H 0.97003 * 119.99828 * 0.02562 * 14 12 11 31 31 H 1.09005 * 109.35206 * 324.82012 * 15 14 12 32 32 H 1.08998 * 109.47971 * 56.90443 * 16 15 14 33 33 H 1.09004 * 109.46635 * 296.89633 * 16 15 14 34 34 H 1.09001 * 109.56649 * 296.74231 * 17 16 15 35 35 H 1.08999 * 109.56825 * 176.39267 * 17 16 15 36 36 H 1.09002 * 117.50783 * 0.27023 * 19 18 17 37 37 H 1.09008 * 117.50386 * 215.22396 * 19 18 17 38 38 H 1.09001 * 117.50504 * 144.89350 * 20 18 17 39 39 H 1.09001 * 117.52712 * 359.83898 * 20 18 17 40 40 H 1.08996 * 109.57213 * 173.75440 * 21 18 17 41 41 H 1.08998 * 109.56916 * 294.11313 * 21 18 17 42 42 H 1.09005 * 109.47136 * 303.08353 * 22 15 14 43 43 H 1.08995 * 109.47675 * 63.09658 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3466 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4804 -4.9870 0.0012 12 6 2.4598 -6.1324 0.0005 13 8 3.6522 -5.9108 0.0001 14 7 2.0106 -7.4031 0.0015 15 6 2.9626 -8.5166 0.0014 16 6 2.2989 -9.7529 -0.6073 17 6 3.3169 -10.8952 -0.6787 18 6 3.8688 -11.1559 0.7259 19 6 3.1556 -12.1982 1.5867 20 6 4.5308 -12.5075 0.9907 21 6 4.4494 -9.9271 1.4318 22 6 3.3961 -8.8148 1.4374 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6243 -2.5566 0.8903 26 1 2.8721 -3.6042 0.8905 27 1 2.8720 -3.6042 -0.8895 28 1 0.8535 -5.0450 -0.8885 29 1 0.8541 -5.0445 0.8914 30 1 1.0569 -7.5804 0.0022 31 1 3.8359 -8.2452 -0.5918 32 1 1.9449 -9.5182 -1.6111 33 1 1.4559 -10.0556 0.0139 34 1 4.1327 -10.6161 -1.3455 35 1 2.8296 -11.7957 -1.0525 36 1 2.2934 -12.7048 1.1529 37 1 3.1019 -12.0136 2.6597 38 1 5.3817 -12.5264 1.6716 39 1 4.5733 -13.2179 0.1651 40 1 4.7128 -10.1856 2.4573 41 1 5.3375 -9.5861 0.8998 42 1 3.8203 -7.9150 1.8832 43 1 2.5318 -9.1357 2.0187 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594010595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:43 Heat of formation + Delta-G solvation = -54.827374 kcal Electronic energy + Delta-G solvation = -19727.106117 eV Core-core repulsion = 16771.169517 eV Total energy + Delta-G solvation = -2955.936600 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.16041 -38.91215 -35.82507 -34.11698 -32.64290 -31.86685 -31.22140 -28.21075 -26.55714 -23.76741 -23.19630 -22.76960 -21.38144 -20.46171 -19.76052 -18.88399 -16.79820 -16.24337 -16.01195 -15.65925 -15.36233 -15.04114 -14.39728 -14.09869 -13.80075 -13.48544 -13.28497 -12.94392 -12.56469 -12.41333 -12.24699 -12.13617 -11.83704 -11.74050 -11.36959 -11.30015 -10.97919 -10.79465 -10.56837 -10.51176 -10.49296 -10.29493 -9.94941 -9.64360 -9.59068 -9.21642 -8.96583 -8.92192 -8.30171 -5.95693 -3.96846 2.99181 3.27490 3.35094 3.42282 3.48191 3.52900 4.26207 4.39983 4.51253 4.55464 4.64462 4.79133 4.91345 5.03211 5.17161 5.21299 5.22233 5.33549 5.40430 5.47214 5.52189 5.58258 5.65307 5.72460 5.76357 5.78069 5.81271 5.82684 5.87177 5.95619 6.14982 6.19644 6.32427 6.61669 6.76991 6.97517 7.20154 7.68664 7.74546 7.86942 8.05521 8.49488 8.53925 9.10650 9.67069 11.15897 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.056695 B = 0.002767 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.755104 B =10116.632559 C =10305.626039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.139 4.139 12 C 0.513 3.487 13 O -0.538 6.538 14 N -0.738 5.738 15 C 0.146 3.854 16 C -0.123 4.123 17 C -0.077 4.077 18 C -0.123 4.123 19 C -0.174 4.174 20 C -0.177 4.177 21 C -0.078 4.078 22 C -0.126 4.126 23 H 0.259 0.741 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.398 0.602 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.505 -26.334 1.054 26.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.132 4.132 11 C -0.179 4.179 12 C 0.301 3.699 13 O -0.414 6.414 14 N -0.390 5.390 15 C 0.041 3.959 16 C -0.161 4.161 17 C -0.115 4.115 18 C -0.123 4.123 19 C -0.211 4.211 20 C -0.214 4.214 21 C -0.116 4.116 22 C -0.164 4.164 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.231 0.769 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.235 -26.030 1.046 26.393 hybrid contribution -0.153 0.758 0.074 0.777 sum 4.082 -25.273 1.120 25.625 Atomic orbital electron populations 1.69975 1.06031 1.26396 1.51395 1.25027 0.94859 0.99260 0.95442 0.86541 0.80243 0.83777 0.77502 1.19683 1.21049 1.21055 1.21320 0.93232 0.91025 1.49876 0.92531 1.19139 0.93991 0.91513 0.97095 1.21434 0.98599 0.91579 1.01634 1.21847 0.98188 0.94219 1.03658 1.21252 0.90369 0.83815 0.74493 1.90667 1.17339 1.84729 1.48693 1.46229 1.09894 1.05742 1.77137 1.20856 0.93051 0.85556 0.96439 1.21775 0.98634 0.94370 1.01287 1.21076 0.98237 0.98003 0.94148 1.21535 1.03437 0.90660 0.96648 1.23017 0.95704 1.03066 0.99343 1.22986 0.96371 0.98628 1.03442 1.21102 0.97993 0.92859 0.99672 1.21890 0.98943 0.98621 0.96976 0.93148 0.96628 0.96627 0.92764 0.92746 0.89461 0.89453 0.76857 0.89706 0.91178 0.91356 0.91153 0.91471 0.88981 0.88948 0.88899 0.88935 0.91673 0.91203 0.91150 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.09 -2.08 4.44 -26.73 -0.12 -2.19 16 11 C -0.14 -2.34 5.70 -27.88 -0.16 -2.49 16 12 C 0.51 8.32 7.79 -10.99 -0.09 8.24 16 13 O -0.54 -10.87 15.64 5.56 0.09 -10.78 16 14 N -0.74 -8.75 5.07 -53.86 -0.27 -9.03 16 15 C 0.15 1.58 2.36 -67.99 -0.16 1.42 16 16 C -0.12 -0.98 5.39 -26.66 -0.14 -1.13 16 17 C -0.08 -0.57 5.67 -26.56 -0.15 -0.72 16 18 C -0.12 -0.95 1.97 -154.54 -0.31 -1.26 16 19 C -0.17 -1.21 9.93 -26.79 -0.27 -1.48 16 20 C -0.18 -1.22 9.99 -26.81 -0.27 -1.49 16 21 C -0.08 -0.70 5.67 -26.56 -0.15 -0.86 16 22 C -0.13 -1.32 5.49 -26.67 -0.15 -1.47 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 27 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 28 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.40 3.62 8.60 -40.82 -0.35 3.27 16 31 H 0.08 1.11 7.58 -51.93 -0.39 0.72 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.64 8.14 -51.92 -0.42 0.21 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 347.42 15.07 5.24 5.24 Total: -1.00 -32.94 347.42 -9.63 -42.56 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -7.89 Total: -1.59 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -2.50 Total: -16.99 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.46 Total: -35.63 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.94 -9.63 -42.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594010595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.264 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds