Wall clock time and date at job start Mon Mar 30 2020 06:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99746 * 2 1 4 4 H 1.48500 * 109.47366 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.47029 * 299.99541 * 3 2 1 6 6 H 1.48496 * 109.47276 * 59.99289 * 3 2 1 7 7 C 1.37874 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00022 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99735 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46763 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46603 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.46751 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00088 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00144 * 179.97438 * 12 11 10 15 15 C 1.46502 * 120.00319 * 180.02562 * 14 12 11 16 16 C 1.52951 * 109.41364 * 205.00669 * 15 14 12 17 17 C 1.53179 * 109.44734 * 176.90754 * 16 15 14 18 18 C 1.53147 * 108.88655 * 56.56620 * 17 16 15 19 19 C 1.52841 * 117.67569 * 91.49469 * 18 17 16 20 20 C 1.52806 * 117.74825 * 160.37823 * 18 17 16 21 21 C 1.53147 * 115.00654 * 306.06267 * 18 17 16 22 22 C 1.52934 * 109.41289 * 84.64654 * 15 14 12 23 23 H 0.96995 * 119.99915 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47515 * 59.99248 * 9 7 2 25 25 H 1.08997 * 109.46896 * 299.99168 * 9 7 2 26 26 H 1.08994 * 109.47078 * 59.99902 * 10 9 7 27 27 H 1.08997 * 109.46997 * 299.99427 * 10 9 7 28 28 H 1.08994 * 109.47376 * 60.00216 * 11 10 9 29 29 H 1.08997 * 109.47083 * 299.99505 * 11 10 9 30 30 H 0.97003 * 119.99828 * 0.02562 * 14 12 11 31 31 H 1.09005 * 109.35206 * 324.82012 * 15 14 12 32 32 H 1.08998 * 109.47971 * 56.90443 * 16 15 14 33 33 H 1.09004 * 109.46635 * 296.89633 * 16 15 14 34 34 H 1.09001 * 109.56649 * 296.74231 * 17 16 15 35 35 H 1.08999 * 109.56825 * 176.39267 * 17 16 15 36 36 H 1.09002 * 117.50783 * 0.27023 * 19 18 17 37 37 H 1.09008 * 117.50386 * 215.22396 * 19 18 17 38 38 H 1.09001 * 117.50504 * 144.89350 * 20 18 17 39 39 H 1.09001 * 117.52712 * 359.83898 * 20 18 17 40 40 H 1.08996 * 109.57213 * 173.75440 * 21 18 17 41 41 H 1.08998 * 109.56916 * 294.11313 * 21 18 17 42 42 H 1.09005 * 109.47136 * 303.08353 * 22 15 14 43 43 H 1.08995 * 109.47675 * 63.09658 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3466 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4804 -4.9870 0.0012 12 6 2.4598 -6.1324 0.0005 13 8 3.6522 -5.9108 0.0001 14 7 2.0106 -7.4031 0.0015 15 6 2.9626 -8.5166 0.0014 16 6 2.2989 -9.7529 -0.6073 17 6 3.3169 -10.8952 -0.6787 18 6 3.8688 -11.1559 0.7259 19 6 3.1556 -12.1982 1.5867 20 6 4.5308 -12.5075 0.9907 21 6 4.4494 -9.9271 1.4318 22 6 3.3961 -8.8148 1.4374 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5570 -0.8896 25 1 0.6243 -2.5566 0.8903 26 1 2.8721 -3.6042 0.8905 27 1 2.8720 -3.6042 -0.8895 28 1 0.8535 -5.0450 -0.8885 29 1 0.8541 -5.0445 0.8914 30 1 1.0569 -7.5804 0.0022 31 1 3.8359 -8.2452 -0.5918 32 1 1.9449 -9.5182 -1.6111 33 1 1.4559 -10.0556 0.0139 34 1 4.1327 -10.6161 -1.3455 35 1 2.8296 -11.7957 -1.0525 36 1 2.2934 -12.7048 1.1529 37 1 3.1019 -12.0136 2.6597 38 1 5.3817 -12.5264 1.6716 39 1 4.5733 -13.2179 0.1651 40 1 4.7128 -10.1856 2.4573 41 1 5.3375 -9.5861 0.8998 42 1 3.8203 -7.9150 1.8832 43 1 2.5318 -9.1357 2.0187 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594010595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:42 Heat of formation + Delta-G solvation = -74.051730 kcal Electronic energy + Delta-G solvation = -19727.939748 eV Core-core repulsion = 16771.169517 eV Total energy + Delta-G solvation = -2956.770231 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.15438 -39.87965 -36.80107 -36.03854 -34.10280 -33.41691 -31.92872 -29.88771 -27.66540 -25.60033 -23.93180 -23.34951 -22.55749 -21.79710 -21.19489 -19.63174 -18.56886 -17.68232 -17.28160 -16.70052 -16.47757 -16.22259 -15.90527 -15.20556 -14.92875 -14.53444 -14.37745 -14.21995 -13.96687 -13.68506 -13.27925 -13.15321 -13.05546 -12.86460 -12.62490 -12.52071 -12.37632 -12.35859 -12.02944 -11.77304 -11.56037 -11.46330 -11.26561 -11.24525 -10.96624 -10.70299 -10.55077 -10.43288 -10.00991 -8.20839 -6.30734 1.38958 1.39145 1.53173 1.69032 2.23017 2.41838 2.91652 3.12001 3.62109 3.71841 3.92207 3.93151 4.08873 4.11296 4.17218 4.25194 4.28719 4.35676 4.38325 4.52726 4.70862 4.81662 4.84266 4.90714 4.96885 4.98404 4.99127 5.08747 5.09651 5.11593 5.17238 5.19409 5.23361 5.32773 5.39838 5.46646 5.53205 5.60821 5.75459 5.86849 6.27420 6.62160 6.84911 7.33218 7.38091 8.90931 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.056695 B = 0.002767 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.755104 B =10116.632559 C =10305.626039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.050 0.950 9 C 0.026 3.974 10 C -0.082 4.082 11 C -0.131 4.131 12 C 0.515 3.485 13 O -0.585 6.585 14 N -0.716 5.716 15 C 0.144 3.856 16 C -0.113 4.113 17 C -0.075 4.075 18 C -0.133 4.133 19 C -0.168 4.168 20 C -0.175 4.175 21 C -0.076 4.076 22 C -0.120 4.120 23 H 0.265 0.735 24 H 0.001 0.999 25 H 0.001 0.999 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.415 0.585 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.038 0.962 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.860 -27.818 0.969 27.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.068 0.932 9 C -0.011 4.011 10 C -0.120 4.120 11 C -0.171 4.171 12 C 0.303 3.697 13 O -0.465 6.465 14 N -0.368 5.368 15 C 0.040 3.960 16 C -0.151 4.151 17 C -0.113 4.113 18 C -0.133 4.133 19 C -0.205 4.205 20 C -0.212 4.212 21 C -0.114 4.114 22 C -0.159 4.159 23 H 0.074 0.926 24 H 0.020 0.980 25 H 0.019 0.981 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.252 0.748 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.552 -27.560 0.962 27.805 hybrid contribution 0.038 1.185 0.117 1.192 sum 3.590 -26.375 1.079 26.640 Atomic orbital electron populations 1.70072 1.07475 1.27740 1.51670 1.25914 0.95849 1.03085 0.94697 0.85444 0.78851 0.78974 0.78061 1.19297 1.19980 1.20008 1.21720 0.93307 0.92860 1.50609 0.93171 1.19023 0.94194 0.92374 0.95534 1.21151 0.97605 0.93117 1.00138 1.21683 0.97949 0.91741 1.05680 1.21064 0.89350 0.85006 0.74280 1.90657 1.19093 1.85527 1.51260 1.46028 1.11186 1.04589 1.75032 1.20968 0.92318 0.86198 0.96556 1.21728 0.98958 0.92834 1.01606 1.21084 0.97967 0.98372 0.93856 1.21477 1.04564 0.90354 0.96954 1.23077 0.96060 1.02102 0.99258 1.23055 0.96524 0.97875 1.03708 1.21049 0.97111 0.93119 1.00115 1.21815 0.99661 0.97867 0.96564 0.92639 0.98021 0.98060 0.94300 0.94219 0.87377 0.87470 0.74759 0.92344 0.90509 0.89766 0.91856 0.89628 0.87851 0.88955 0.88894 0.87959 0.91160 0.92482 0.94317 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 2 C 0.00 0.14 5.46 84.65 0.46 0.61 16 3 Si 0.96 45.67 29.54 68.60 2.03 47.70 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 5 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.55 -32.66 9.11 25.60 0.23 -32.43 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.08 -3.69 4.44 30.60 0.14 -3.55 16 11 C -0.13 -4.31 5.70 29.85 0.17 -4.14 16 12 C 0.51 16.63 7.79 87.66 0.68 17.31 16 13 O -0.59 -24.37 15.64 -3.04 -0.05 -24.42 16 14 N -0.72 -16.10 5.07 -442.71 -2.25 -18.35 16 15 C 0.14 3.02 2.36 44.95 0.11 3.12 16 16 C -0.11 -1.55 5.39 30.64 0.17 -1.38 16 17 C -0.07 -0.95 5.67 30.70 0.17 -0.77 16 18 C -0.13 -1.83 1.97 -52.20 -0.10 -1.93 16 19 C -0.17 -1.90 9.93 30.55 0.30 -1.59 16 20 C -0.17 -2.03 9.99 30.54 0.31 -1.72 16 21 C -0.08 -1.33 5.67 30.70 0.17 -1.16 16 22 C -0.12 -2.50 5.49 30.63 0.17 -2.33 16 23 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 24 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 25 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 26 H 0.04 1.83 8.10 -2.39 -0.02 1.81 16 27 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 28 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 29 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.42 6.49 8.60 -92.71 -0.80 5.69 16 31 H 0.06 1.57 7.58 -2.38 -0.02 1.55 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.09 0.81 8.09 -2.39 -0.02 0.79 16 36 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16 37 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 1.14 8.09 -2.39 -0.02 1.12 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 43 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -72.18 347.42 3.31 -68.87 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.16 Total: 11.18 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: 3.13 Total: -28.43 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -1.96 Total: -74.90 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.05 Total: -24.42 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -72.18 3.31 -68.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594010595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.180 kcal (2) G-P(sol) polarization free energy of solvation -72.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds