Wall clock time and date at job start Mon Mar 30 2020 06:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99972 * 2 1 4 4 H 1.48502 * 109.46754 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47100 * 299.99411 * 3 2 1 6 6 H 1.48488 * 109.47240 * 59.99805 * 3 2 1 7 7 C 1.37878 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00028 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99982 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47210 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46946 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46941 * 179.97438 * 11 10 9 13 13 O 1.21277 * 119.99979 * 5.05623 * 12 11 10 14 14 N 1.34783 * 119.99797 * 185.04556 * 12 11 10 15 15 C 1.46494 * 120.00069 * 355.55700 * 14 12 11 16 16 C 1.53004 * 109.47356 * 89.99680 * 15 14 12 17 17 C 1.52992 * 117.49811 * 184.99772 * 16 15 14 18 18 C 1.52991 * 60.00333 * 252.51062 * 17 16 15 19 19 C 1.46496 * 119.99807 * 175.55232 * 14 12 11 20 20 C 1.53782 * 113.61330 * 44.36366 * 19 14 12 21 21 C 1.53780 * 87.08144 * 220.01848 * 20 19 14 22 22 C 1.53774 * 87.08116 * 25.43456 * 21 20 19 23 23 H 0.96999 * 120.00016 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46833 * 59.99672 * 9 7 2 25 25 H 1.09005 * 109.47194 * 300.00006 * 9 7 2 26 26 H 1.09000 * 109.47335 * 60.00169 * 10 9 7 27 27 H 1.08994 * 109.47444 * 299.99729 * 10 9 7 28 28 H 1.09006 * 109.47148 * 60.00555 * 11 10 9 29 29 H 1.08991 * 109.47920 * 300.00265 * 11 10 9 30 30 H 1.09003 * 109.47176 * 329.99496 * 15 14 12 31 31 H 1.08999 * 109.47115 * 209.99409 * 15 14 12 32 32 H 1.08998 * 115.55973 * 330.68937 * 16 15 14 33 33 H 1.09011 * 117.49802 * 145.02078 * 17 16 15 34 34 H 1.09005 * 117.50462 * 0.02562 * 17 16 15 35 35 H 1.08997 * 117.50164 * 107.48737 * 18 17 16 36 36 H 1.09004 * 117.50144 * 252.49311 * 18 17 16 37 37 H 1.08991 * 112.85030 * 175.67571 * 19 14 12 38 38 H 1.08995 * 113.61785 * 334.57438 * 20 19 14 39 39 H 1.09004 * 113.61200 * 105.47347 * 20 19 14 40 40 H 1.09004 * 113.61948 * 270.88373 * 21 20 19 41 41 H 1.09003 * 113.61425 * 139.98478 * 21 20 19 42 42 H 1.08996 * 113.61435 * 220.01642 * 22 21 20 43 43 H 1.09001 * 113.68909 * 89.12393 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4802 -4.9870 0.0012 12 6 2.4596 -6.1325 0.0005 13 8 3.6489 -5.9135 0.0922 14 7 2.0136 -7.4003 -0.1017 15 6 0.5741 -7.6717 -0.1142 16 6 0.0627 -7.6466 -1.5560 17 6 -1.4446 -7.7927 -1.7736 18 6 -0.5053 -8.9475 -2.1268 19 6 2.9685 -8.5069 -0.2005 20 6 4.1409 -8.3990 0.7888 21 6 5.0446 -8.9028 -0.3489 22 6 4.0032 -8.3293 -1.3242 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5570 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8719 -3.6044 -0.8894 28 1 0.8533 -5.0451 -0.8887 29 1 0.8539 -5.0446 0.8913 30 1 0.0557 -6.9101 0.4685 31 1 0.3856 -8.6530 0.3211 32 1 0.6087 -6.9941 -2.2373 33 1 -1.8903 -7.2362 -2.5982 34 1 -2.0721 -7.9063 -0.8896 35 1 -0.5146 -9.8212 -1.4753 36 1 -0.3332 -9.1511 -3.1838 37 1 2.4854 -9.4839 -0.2023 38 1 4.3580 -7.3769 1.0989 39 1 4.0690 -9.0907 1.6281 40 1 5.1302 -9.9887 -0.3904 41 1 6.0102 -8.3992 -0.3952 42 1 3.8201 -8.9646 -2.1907 43 1 4.1816 -7.2881 -1.5929 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594014110.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:54 Heat of formation + Delta-G solvation = -5.190794 kcal Electronic energy + Delta-G solvation = -20447.870528 eV Core-core repulsion = 17494.086332 eV Total energy + Delta-G solvation = -2953.784196 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.54930 -37.65930 -37.41758 -34.25129 -34.04012 -31.91714 -28.04946 -27.18050 -25.56098 -25.14511 -23.28737 -22.53173 -21.28145 -20.39498 -19.67987 -18.63168 -17.01189 -16.20330 -16.06424 -15.63336 -15.33927 -14.81113 -14.38136 -14.34513 -13.64905 -13.45962 -13.02527 -12.90335 -12.64569 -12.22229 -11.94408 -11.78962 -11.71613 -11.67347 -11.28873 -11.21081 -10.79760 -10.63886 -10.56869 -10.49796 -10.47952 -10.40431 -10.03741 -9.63509 -9.40913 -9.13265 -8.89120 -8.51749 -8.30174 -5.95679 -3.96808 2.89420 3.06958 3.34935 3.42206 3.48057 3.65091 4.46063 4.51544 4.60237 4.72407 4.73596 4.80313 4.84399 4.96058 5.08286 5.19155 5.34252 5.40516 5.43809 5.46953 5.48963 5.68640 5.73692 5.77252 5.78376 5.87635 5.93667 5.94664 6.04470 6.13508 6.19850 6.32093 6.37821 6.76575 6.85897 6.97843 7.19652 7.55597 7.74085 7.86929 8.05436 8.48052 8.49924 9.10592 9.67120 11.15868 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.019331 B = 0.004409 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.068370 B = 6349.753218 C = 7504.123552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.094 4.094 11 C -0.139 4.139 12 C 0.517 3.483 13 O -0.529 6.529 14 N -0.609 5.609 15 C 0.141 3.859 16 C -0.171 4.171 17 C -0.173 4.173 18 C -0.180 4.180 19 C 0.125 3.875 20 C -0.159 4.159 21 C -0.137 4.137 22 C -0.147 4.147 23 H 0.259 0.741 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.116 0.884 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 -21.674 -1.789 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.132 4.132 11 C -0.178 4.178 12 C 0.307 3.693 13 O -0.405 6.405 14 N -0.341 5.341 15 C 0.017 3.983 16 C -0.190 4.190 17 C -0.211 4.211 18 C -0.217 4.217 19 C 0.021 3.979 20 C -0.197 4.197 21 C -0.174 4.174 22 C -0.186 4.186 23 H 0.068 0.932 24 H 0.033 0.967 25 H 0.033 0.967 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.126 0.874 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.134 0.866 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.450 -21.430 -1.724 21.504 hybrid contribution 0.179 0.801 -0.146 0.834 sum 0.629 -20.629 -1.869 20.723 Atomic orbital electron populations 1.69972 1.06026 1.26376 1.51375 1.25015 0.94838 0.99213 0.95430 0.86554 0.80259 0.83833 0.77505 1.19688 1.21061 1.21052 1.21314 0.93207 0.91022 1.49904 0.92563 1.19127 0.93970 0.91486 0.97064 1.21439 0.98598 0.91626 1.01552 1.21912 0.98244 0.94179 1.03510 1.21200 0.90139 0.83324 0.74590 1.90569 1.17388 1.84249 1.48337 1.47991 1.05989 1.06336 1.73831 1.21170 0.80632 1.02223 0.94277 1.22862 0.96567 1.01122 0.98471 1.22944 0.92318 1.02191 1.03635 1.23011 1.04768 0.92316 1.01628 1.22579 0.88109 0.89689 0.97506 1.23590 0.95306 1.04336 0.96455 1.22585 0.98197 0.99643 0.97023 1.23303 0.95945 1.02732 0.96580 0.93160 0.96676 0.96651 0.92666 0.92929 0.89531 0.89522 0.89424 0.90545 0.87358 0.88542 0.88552 0.88978 0.89055 0.88016 0.86579 0.92440 0.90833 0.91169 0.92081 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 10 C -0.09 -2.05 4.46 -26.73 -0.12 -2.17 16 11 C -0.14 -2.36 4.26 -27.88 -0.12 -2.47 16 12 C 0.52 8.38 7.08 -10.98 -0.08 8.31 16 13 O -0.53 -10.11 11.70 5.56 0.07 -10.05 16 14 N -0.61 -7.67 2.73 -165.19 -0.45 -8.12 16 15 C 0.14 1.40 5.44 -4.04 -0.02 1.38 16 16 C -0.17 -1.68 5.61 -90.62 -0.51 -2.18 16 17 C -0.17 -1.49 10.25 -26.74 -0.27 -1.77 16 18 C -0.18 -1.46 10.18 -26.74 -0.27 -1.73 16 19 C 0.12 1.43 4.42 -67.12 -0.30 1.13 16 20 C -0.16 -1.95 7.37 -25.92 -0.19 -2.14 16 21 C -0.14 -1.50 8.08 -25.92 -0.21 -1.71 16 22 C -0.15 -1.77 7.44 -25.92 -0.19 -1.96 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 1.25 8.05 -51.93 -0.42 0.84 16 27 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.09 1.38 7.60 -51.93 -0.39 0.98 16 29 H 0.09 1.36 7.53 -51.93 -0.39 0.97 16 30 H 0.09 0.88 6.61 -51.93 -0.34 0.53 16 31 H 0.08 0.61 7.71 -51.93 -0.40 0.21 16 32 H 0.11 1.26 8.08 -51.93 -0.42 0.84 16 33 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.65 8.03 -51.93 -0.42 0.23 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.10 0.93 7.97 -51.93 -0.41 0.52 16 38 H 0.12 1.82 5.43 -51.93 -0.28 1.53 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.43 6.48 -51.93 -0.34 1.09 16 LS Contribution 343.65 15.07 5.18 5.18 Total: -1.00 -31.78 343.65 -9.91 -41.69 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -7.59 Total: -0.58 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -2.83 Total: -18.76 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.29 Total: -34.60 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.05 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.78 -9.91 -41.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594014110.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.498 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds