Wall clock time and date at job start Mon Mar 30 2020 06:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99972 * 2 1 4 4 H 1.48502 * 109.46754 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47100 * 299.99411 * 3 2 1 6 6 H 1.48488 * 109.47240 * 59.99805 * 3 2 1 7 7 C 1.37878 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00028 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99982 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47210 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46946 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46941 * 179.97438 * 11 10 9 13 13 O 1.21277 * 119.99979 * 5.05623 * 12 11 10 14 14 N 1.34783 * 119.99797 * 185.04556 * 12 11 10 15 15 C 1.46494 * 120.00069 * 355.55700 * 14 12 11 16 16 C 1.53004 * 109.47356 * 89.99680 * 15 14 12 17 17 C 1.52992 * 117.49811 * 184.99772 * 16 15 14 18 18 C 1.52991 * 60.00333 * 252.51062 * 17 16 15 19 19 C 1.46496 * 119.99807 * 175.55232 * 14 12 11 20 20 C 1.53782 * 113.61330 * 44.36366 * 19 14 12 21 21 C 1.53780 * 87.08144 * 220.01848 * 20 19 14 22 22 C 1.53774 * 87.08116 * 25.43456 * 21 20 19 23 23 H 0.96999 * 120.00016 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46833 * 59.99672 * 9 7 2 25 25 H 1.09005 * 109.47194 * 300.00006 * 9 7 2 26 26 H 1.09000 * 109.47335 * 60.00169 * 10 9 7 27 27 H 1.08994 * 109.47444 * 299.99729 * 10 9 7 28 28 H 1.09006 * 109.47148 * 60.00555 * 11 10 9 29 29 H 1.08991 * 109.47920 * 300.00265 * 11 10 9 30 30 H 1.09003 * 109.47176 * 329.99496 * 15 14 12 31 31 H 1.08999 * 109.47115 * 209.99409 * 15 14 12 32 32 H 1.08998 * 115.55973 * 330.68937 * 16 15 14 33 33 H 1.09011 * 117.49802 * 145.02078 * 17 16 15 34 34 H 1.09005 * 117.50462 * 0.02562 * 17 16 15 35 35 H 1.08997 * 117.50164 * 107.48737 * 18 17 16 36 36 H 1.09004 * 117.50144 * 252.49311 * 18 17 16 37 37 H 1.08991 * 112.85030 * 175.67571 * 19 14 12 38 38 H 1.08995 * 113.61785 * 334.57438 * 20 19 14 39 39 H 1.09004 * 113.61200 * 105.47347 * 20 19 14 40 40 H 1.09004 * 113.61948 * 270.88373 * 21 20 19 41 41 H 1.09003 * 113.61425 * 139.98478 * 21 20 19 42 42 H 1.08996 * 113.61435 * 220.01642 * 22 21 20 43 43 H 1.09001 * 113.68909 * 89.12393 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4802 -4.9870 0.0012 12 6 2.4596 -6.1325 0.0005 13 8 3.6489 -5.9135 0.0922 14 7 2.0136 -7.4003 -0.1017 15 6 0.5741 -7.6717 -0.1142 16 6 0.0627 -7.6466 -1.5560 17 6 -1.4446 -7.7927 -1.7736 18 6 -0.5053 -8.9475 -2.1268 19 6 2.9685 -8.5069 -0.2005 20 6 4.1409 -8.3990 0.7888 21 6 5.0446 -8.9028 -0.3489 22 6 4.0032 -8.3293 -1.3242 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5570 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8719 -3.6044 -0.8894 28 1 0.8533 -5.0451 -0.8887 29 1 0.8539 -5.0446 0.8913 30 1 0.0557 -6.9101 0.4685 31 1 0.3856 -8.6530 0.3211 32 1 0.6087 -6.9941 -2.2373 33 1 -1.8903 -7.2362 -2.5982 34 1 -2.0721 -7.9063 -0.8896 35 1 -0.5146 -9.8212 -1.4753 36 1 -0.3332 -9.1511 -3.1838 37 1 2.4854 -9.4839 -0.2023 38 1 4.3580 -7.3769 1.0989 39 1 4.0690 -9.0907 1.6281 40 1 5.1302 -9.9887 -0.3904 41 1 6.0102 -8.3992 -0.3952 42 1 3.8201 -8.9646 -2.1907 43 1 4.1816 -7.2881 -1.5929 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594014110.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:54 Heat of formation + Delta-G solvation = -21.789509 kcal Electronic energy + Delta-G solvation = -20448.590302 eV Core-core repulsion = 17494.086332 eV Total energy + Delta-G solvation = -2954.503971 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.65537 -38.57166 -38.41323 -36.08067 -35.20547 -33.92162 -29.87038 -28.03464 -26.64579 -26.51266 -24.88849 -23.17587 -22.44141 -21.75718 -20.83388 -19.83630 -18.51071 -17.82388 -17.28957 -16.85189 -16.49047 -16.14777 -15.80893 -15.43229 -14.90711 -14.78707 -14.24933 -14.00205 -13.81126 -13.67524 -13.59678 -13.32217 -12.84928 -12.60694 -12.53161 -12.45367 -12.36265 -12.28068 -12.18539 -11.58873 -11.51083 -11.40922 -11.37555 -11.21161 -11.18253 -10.76979 -10.55568 -10.29131 -9.55811 -8.20967 -6.31056 1.38645 1.38833 1.52798 1.63374 2.03374 2.41042 2.96204 3.11896 3.51939 3.72317 3.84333 3.93347 4.01203 4.04672 4.06590 4.13694 4.22658 4.24804 4.37281 4.52631 4.60656 4.73928 4.81427 4.83834 4.87233 4.94690 4.96085 5.04348 5.08578 5.10439 5.13359 5.17213 5.24314 5.32443 5.33258 5.45933 5.52855 5.73706 5.85033 5.88959 6.26132 6.45853 6.84139 7.25826 7.37724 8.90838 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.019331 B = 0.004409 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.068370 B = 6349.753218 C = 7504.123552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.050 0.950 9 C 0.028 3.972 10 C -0.079 4.079 11 C -0.129 4.129 12 C 0.516 3.484 13 O -0.565 6.565 14 N -0.598 5.598 15 C 0.137 3.863 16 C -0.186 4.186 17 C -0.174 4.174 18 C -0.164 4.164 19 C 0.127 3.873 20 C -0.165 4.165 21 C -0.127 4.127 22 C -0.151 4.151 23 H 0.265 0.735 24 H -0.001 1.001 25 H 0.000 1.000 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.141 0.859 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.055 0.945 42 H 0.080 0.920 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.557 -23.669 -1.680 23.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.585 4.585 8 H 0.068 0.932 9 C -0.009 4.009 10 C -0.118 4.118 11 C -0.169 4.169 12 C 0.305 3.695 13 O -0.445 6.445 14 N -0.329 5.329 15 C 0.015 3.985 16 C -0.206 4.206 17 C -0.212 4.212 18 C -0.200 4.200 19 C 0.024 3.976 20 C -0.203 4.203 21 C -0.165 4.165 22 C -0.190 4.190 23 H 0.074 0.926 24 H 0.017 0.983 25 H 0.019 0.981 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.104 0.896 31 H 0.126 0.874 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.110 0.890 37 H 0.158 0.842 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.123 0.877 41 H 0.074 0.926 42 H 0.098 0.902 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.090 -23.459 -1.622 23.515 hybrid contribution 0.303 1.397 -0.202 1.443 sum 0.213 -22.062 -1.823 22.138 Atomic orbital electron populations 1.70073 1.07495 1.27729 1.51605 1.25897 0.95816 1.03028 0.94632 0.85450 0.78868 0.78993 0.78068 1.19285 1.20005 1.19968 1.21700 0.93278 0.92783 1.50709 0.93162 1.19000 0.94147 0.92426 0.95367 1.21138 0.97552 0.92978 1.00086 1.21712 0.98093 0.92274 1.04791 1.20931 0.89191 0.84483 0.74845 1.90577 1.18618 1.85020 1.50277 1.47952 1.07628 1.05296 1.72016 1.21408 0.78602 1.03890 0.94614 1.22703 0.97314 1.02552 0.97982 1.23019 0.91650 1.02527 1.04006 1.23096 1.02818 0.92104 1.02030 1.22844 0.87756 0.90481 0.96478 1.23482 0.96486 1.02645 0.97690 1.22609 0.97009 1.01251 0.95644 1.23222 0.97081 1.00883 0.97802 0.92642 0.98305 0.98147 0.94049 0.94405 0.88485 0.88004 0.89623 0.87373 0.89859 0.89158 0.87302 0.86944 0.88979 0.84163 0.90426 0.90507 0.87654 0.92572 0.90172 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 2 C 0.00 0.25 5.46 84.66 0.46 0.71 16 3 Si 0.96 45.72 29.54 68.60 2.03 47.74 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.55 -32.75 9.11 25.60 0.23 -32.51 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.03 1.51 4.97 29.85 0.15 1.65 16 10 C -0.08 -3.62 4.46 30.59 0.14 -3.49 16 11 C -0.13 -4.48 4.26 29.85 0.13 -4.35 16 12 C 0.52 17.00 7.08 87.66 0.62 17.62 16 13 O -0.57 -22.64 11.70 -3.02 -0.04 -22.67 16 14 N -0.60 -14.30 2.73 -794.92 -2.17 -16.47 16 15 C 0.14 2.39 5.44 86.38 0.47 2.86 16 16 C -0.19 -3.32 5.61 -10.80 -0.06 -3.38 16 17 C -0.17 -2.65 10.25 30.59 0.31 -2.34 16 18 C -0.16 -2.15 10.18 30.59 0.31 -1.84 16 19 C 0.13 2.61 4.42 45.52 0.20 2.81 16 20 C -0.16 -3.85 7.37 31.12 0.23 -3.62 16 21 C -0.13 -2.60 8.08 31.12 0.25 -2.35 16 22 C -0.15 -3.49 7.44 31.12 0.23 -3.26 16 23 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 24 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 25 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 26 H 0.04 1.97 8.05 -2.39 -0.02 1.95 16 27 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.10 3.15 7.60 -2.38 -0.02 3.13 16 29 H 0.10 3.20 7.53 -2.39 -0.02 3.18 16 30 H 0.09 1.54 6.61 -2.39 -0.02 1.53 16 31 H 0.11 1.25 7.71 -2.39 -0.02 1.23 16 32 H 0.08 1.93 8.08 -2.39 -0.02 1.91 16 33 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.11 1.05 8.03 -2.39 -0.02 1.03 16 36 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.14 1.87 7.97 -2.39 -0.02 1.85 16 38 H 0.08 2.50 5.43 -2.39 -0.01 2.48 16 39 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.06 1.75 6.48 -2.39 -0.02 1.73 16 Total: -1.00 -71.01 343.65 4.74 -66.27 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: 0.96 Total: 13.23 kcal Atomic # 6 Polarization: -35.15 SS G_CDS: 3.68 Total: -31.47 kcal Atomic # 7 Polarization: -71.22 SS G_CDS: -1.88 Total: -73.10 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.04 Total: -22.67 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -71.01 4.74 -66.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594014110.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.482 kcal (2) G-P(sol) polarization free energy of solvation -71.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds