Wall clock time and date at job start Mon Mar 30 2020 06:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46912 * 179.97438 * 11 10 9 13 13 O 1.21278 * 119.99985 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00161 * 179.97438 * 12 11 10 15 15 C 1.46882 * 120.47183 * 359.72757 * 14 12 11 16 16 C 1.52842 * 109.02660 * 235.43199 * 15 14 12 17 17 C 1.52753 * 109.17588 * 307.70073 * 16 15 14 18 18 C 1.53397 * 113.52958 * 188.75597 * 17 16 15 19 19 C 1.53849 * 86.97822 * 139.78850 * 18 17 16 20 20 C 1.53418 * 113.48432 * 286.59686 * 17 16 15 21 21 C 1.52767 * 113.00419 * 57.62982 * 17 16 15 22 22 C 1.46877 * 120.47636 * 180.02562 * 14 12 11 23 23 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 25 25 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 26 26 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 27 27 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 28 28 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 29 29 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 30 30 H 1.09003 * 109.58979 * 355.26596 * 15 14 12 31 31 H 1.09002 * 109.58831 * 115.69525 * 15 14 12 32 32 H 1.09003 * 109.61375 * 187.72421 * 16 15 14 33 33 H 1.08999 * 109.44712 * 67.58162 * 16 15 14 34 34 H 1.09004 * 113.62774 * 254.30995 * 18 17 16 35 35 H 1.08998 * 113.62926 * 25.26468 * 18 17 16 36 36 H 1.09000 * 113.60072 * 220.27244 * 19 18 17 37 37 H 1.09000 * 113.67890 * 89.41939 * 19 18 17 38 38 H 1.09003 * 113.62612 * 334.68478 * 20 17 16 39 39 H 1.09001 * 113.63470 * 105.55512 * 20 17 16 40 40 H 1.09000 * 109.53215 * 182.35765 * 21 17 16 41 41 H 1.08997 * 109.59500 * 62.16397 * 21 17 16 42 42 H 1.09001 * 109.58932 * 244.31189 * 22 14 12 43 43 H 1.08999 * 109.59017 * 4.73740 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 6 2.4593 -6.1326 -0.0007 13 8 3.6517 -5.9110 -0.0002 14 7 2.0101 -7.4033 -0.0009 15 6 0.5682 -7.6836 0.0057 16 6 0.2413 -8.5855 1.1955 17 6 1.1613 -9.8047 1.1685 18 6 0.7810 -10.8816 2.1926 19 6 1.1086 -11.9175 1.1034 20 6 0.8028 -10.8170 0.0729 21 6 2.6433 -9.4349 1.1945 22 6 2.9552 -8.5276 -0.0009 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5566 0.8902 26 1 2.8718 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8895 28 1 0.8531 -5.0451 0.8897 29 1 0.8537 -5.0446 -0.8902 30 1 0.0146 -6.7488 0.0948 31 1 0.2900 -8.1887 -0.9193 32 1 -0.7971 -8.9112 1.1333 33 1 0.3952 -8.0333 2.1225 34 1 1.4510 -10.9237 3.0514 35 1 -0.2714 -10.8631 2.4757 36 1 0.4089 -12.7527 1.0709 37 1 2.1504 -12.2382 1.1034 38 1 -0.2437 -10.7807 -0.2300 39 1 1.4894 -10.8062 -0.7737 40 1 3.2461 -10.3409 1.1313 41 1 2.8726 -8.9084 2.1209 42 1 2.8496 -9.0937 -0.9264 43 1 3.9737 -8.1488 0.0840 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594027373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:10 Heat of formation + Delta-G solvation = -43.138508 kcal Electronic energy + Delta-G solvation = -20303.200783 eV Core-core repulsion = 17347.771050 eV Total energy + Delta-G solvation = -2955.429733 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.82573 -39.08913 -35.79005 -34.21300 -32.22031 -31.31086 -30.77168 -27.80672 -26.17310 -24.79630 -24.14376 -23.02239 -21.75337 -20.32870 -19.18793 -17.93645 -16.85626 -16.22881 -15.79032 -15.60356 -15.54700 -14.83351 -14.39979 -14.34370 -14.03667 -13.71659 -13.22198 -12.86928 -12.71606 -12.38425 -12.22655 -12.03774 -11.75279 -11.51029 -11.39773 -11.35548 -11.28063 -10.78479 -10.61610 -10.50981 -10.48968 -10.41890 -10.12388 -9.63841 -9.57303 -9.21880 -8.98246 -8.54690 -8.29697 -5.95560 -3.96718 2.94406 3.12121 3.36376 3.42025 3.47148 4.21614 4.28250 4.33050 4.51049 4.55764 4.69529 4.88664 4.96454 5.10003 5.17227 5.28294 5.36700 5.40474 5.41076 5.45874 5.47663 5.60617 5.63084 5.67902 5.71227 5.74045 5.75849 5.83954 5.86720 5.93430 6.18247 6.22224 6.29778 6.60970 6.76457 6.97363 7.19637 7.54068 7.73791 7.86781 8.05475 8.47177 8.49958 9.10406 9.67097 11.15998 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.046985 B = 0.003250 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.789607 B = 8613.818941 C = 8939.366572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.137 4.137 12 C 0.515 3.485 13 O -0.540 6.540 14 N -0.619 5.619 15 C 0.109 3.891 16 C -0.121 4.121 17 C -0.079 4.079 18 C -0.133 4.133 19 C -0.142 4.142 20 C -0.132 4.132 21 C -0.109 4.109 22 C 0.112 3.888 23 H 0.259 0.741 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.346 -24.831 1.809 24.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.177 4.177 12 C 0.305 3.695 13 O -0.416 6.416 14 N -0.354 5.354 15 C -0.015 4.015 16 C -0.159 4.159 17 C -0.080 4.080 18 C -0.170 4.170 19 C -0.179 4.179 20 C -0.170 4.170 21 C -0.147 4.147 22 C -0.010 4.010 23 H 0.069 0.931 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.843 -24.575 1.805 24.656 hybrid contribution 0.243 0.812 0.026 0.848 sum -0.600 -23.763 1.831 23.841 Atomic orbital electron populations 1.69967 1.06027 1.26499 1.51299 1.25020 0.94858 0.99232 0.95419 0.86594 0.79908 0.83432 0.78097 1.20681 1.21269 1.19840 1.21281 0.93200 0.91035 1.50030 0.92590 1.19126 0.93963 0.91467 0.97074 1.21452 0.98627 0.91577 1.01643 1.21859 0.98217 0.94158 1.03449 1.21275 0.90203 0.83545 0.74505 1.90654 1.17396 1.84220 1.49333 1.48165 1.06704 1.05744 1.74816 1.21612 0.81010 1.00545 0.98293 1.21800 0.98989 0.95974 0.99121 1.21545 0.95458 0.93735 0.97218 1.22943 1.01521 0.95766 0.96780 1.22831 1.01487 0.96728 0.96854 1.22957 1.01604 0.95708 0.96706 1.21674 0.94256 0.99502 0.99298 1.21476 0.94859 0.87251 0.97463 0.93096 0.96643 0.96629 0.92756 0.92745 0.89471 0.89469 0.89043 0.91553 0.90608 0.91258 0.91566 0.90083 0.91719 0.90335 0.90081 0.91483 0.90834 0.91237 0.91951 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 10 C -0.09 -2.11 4.44 -26.73 -0.12 -2.23 16 11 C -0.14 -2.36 4.04 -27.88 -0.11 -2.47 16 12 C 0.51 8.76 7.69 -10.98 -0.08 8.68 16 13 O -0.54 -11.22 15.37 5.56 0.09 -11.13 16 14 N -0.62 -8.06 2.95 -173.00 -0.51 -8.57 16 15 C 0.11 1.09 6.18 -3.91 -0.02 1.06 16 16 C -0.12 -1.04 5.23 -26.94 -0.14 -1.18 16 17 C -0.08 -0.64 0.76 -154.33 -0.12 -0.75 16 18 C -0.13 -0.94 7.23 -26.08 -0.19 -1.13 16 19 C -0.14 -0.92 7.73 -25.85 -0.20 -1.12 16 20 C -0.13 -0.94 6.86 -26.08 -0.18 -1.11 16 21 C -0.11 -1.00 5.20 -26.71 -0.14 -1.14 16 22 C 0.11 1.27 6.29 -3.69 -0.02 1.25 16 23 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 27 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 28 H 0.09 1.37 7.71 -51.93 -0.40 0.97 16 29 H 0.09 1.37 7.91 -51.93 -0.41 0.96 16 30 H 0.09 0.92 5.89 -51.93 -0.31 0.61 16 31 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 32 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.50 7.61 -51.93 -0.40 0.10 16 38 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 39 H 0.07 0.49 7.33 -51.93 -0.38 0.11 16 40 H 0.07 0.57 7.31 -51.93 -0.38 0.19 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.63 7.41 -51.93 -0.39 0.24 16 43 H 0.09 1.22 6.98 -51.93 -0.36 0.85 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -32.89 335.19 -9.15 -42.04 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -7.61 Total: -4.32 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -1.88 Total: -13.70 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.23 Total: -35.14 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.89 -9.15 -42.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594027373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.101 kcal (2) G-P(sol) polarization free energy of solvation -32.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds