Wall clock time and date at job start Mon Mar 30 2020 06:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.46912 * 179.97438 * 11 10 9 13 13 O 1.21278 * 119.99985 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00161 * 179.97438 * 12 11 10 15 15 C 1.46882 * 120.47183 * 359.72757 * 14 12 11 16 16 C 1.52842 * 109.02660 * 235.43199 * 15 14 12 17 17 C 1.52753 * 109.17588 * 307.70073 * 16 15 14 18 18 C 1.53397 * 113.52958 * 188.75597 * 17 16 15 19 19 C 1.53849 * 86.97822 * 139.78850 * 18 17 16 20 20 C 1.53418 * 113.48432 * 286.59686 * 17 16 15 21 21 C 1.52767 * 113.00419 * 57.62982 * 17 16 15 22 22 C 1.46877 * 120.47636 * 180.02562 * 14 12 11 23 23 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 25 25 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 26 26 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 27 27 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 28 28 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 29 29 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 30 30 H 1.09003 * 109.58979 * 355.26596 * 15 14 12 31 31 H 1.09002 * 109.58831 * 115.69525 * 15 14 12 32 32 H 1.09003 * 109.61375 * 187.72421 * 16 15 14 33 33 H 1.08999 * 109.44712 * 67.58162 * 16 15 14 34 34 H 1.09004 * 113.62774 * 254.30995 * 18 17 16 35 35 H 1.08998 * 113.62926 * 25.26468 * 18 17 16 36 36 H 1.09000 * 113.60072 * 220.27244 * 19 18 17 37 37 H 1.09000 * 113.67890 * 89.41939 * 19 18 17 38 38 H 1.09003 * 113.62612 * 334.68478 * 20 17 16 39 39 H 1.09001 * 113.63470 * 105.55512 * 20 17 16 40 40 H 1.09000 * 109.53215 * 182.35765 * 21 17 16 41 41 H 1.08997 * 109.59500 * 62.16397 * 21 17 16 42 42 H 1.09001 * 109.58932 * 244.31189 * 22 14 12 43 43 H 1.08999 * 109.59017 * 4.73740 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 6 2.4593 -6.1326 -0.0007 13 8 3.6517 -5.9110 -0.0002 14 7 2.0101 -7.4033 -0.0009 15 6 0.5682 -7.6836 0.0057 16 6 0.2413 -8.5855 1.1955 17 6 1.1613 -9.8047 1.1685 18 6 0.7810 -10.8816 2.1926 19 6 1.1086 -11.9175 1.1034 20 6 0.8028 -10.8170 0.0729 21 6 2.6433 -9.4349 1.1945 22 6 2.9552 -8.5276 -0.0009 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5566 0.8902 26 1 2.8718 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8895 28 1 0.8531 -5.0451 0.8897 29 1 0.8537 -5.0446 -0.8902 30 1 0.0146 -6.7488 0.0948 31 1 0.2900 -8.1887 -0.9193 32 1 -0.7971 -8.9112 1.1333 33 1 0.3952 -8.0333 2.1225 34 1 1.4510 -10.9237 3.0514 35 1 -0.2714 -10.8631 2.4757 36 1 0.4089 -12.7527 1.0709 37 1 2.1504 -12.2382 1.1034 38 1 -0.2437 -10.7807 -0.2300 39 1 1.4894 -10.8062 -0.7737 40 1 3.2461 -10.3409 1.1313 41 1 2.8726 -8.9084 2.1209 42 1 2.8496 -9.0937 -0.9264 43 1 3.9737 -8.1488 0.0840 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594027373.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:10 Heat of formation + Delta-G solvation = -61.427678 kcal Electronic energy + Delta-G solvation = -20303.993861 eV Core-core repulsion = 17347.771050 eV Total energy + Delta-G solvation = -2956.222811 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 265.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.68371 -40.18381 -36.83685 -36.14901 -34.11399 -32.32074 -31.70612 -29.58003 -26.83512 -26.09078 -25.26896 -24.19131 -22.68498 -21.95531 -20.32055 -18.86625 -18.43362 -17.88174 -16.87697 -16.78634 -16.46315 -16.37139 -15.59784 -15.42221 -14.94984 -14.87715 -14.42151 -14.20619 -14.00893 -13.76091 -13.37913 -13.10634 -13.02993 -12.80929 -12.63519 -12.50240 -12.39860 -12.16529 -12.11502 -11.98840 -11.57709 -11.46290 -11.29364 -11.15884 -11.05188 -10.82562 -10.60699 -10.54622 -9.59819 -8.20618 -6.30593 1.39240 1.40452 1.52071 1.61705 2.03162 2.41532 3.12223 3.56187 3.58471 3.65654 3.81358 4.01740 4.04185 4.14171 4.19704 4.22586 4.28900 4.49165 4.53926 4.61014 4.68525 4.77054 4.80701 4.91143 4.94059 4.95318 5.01405 5.05249 5.05746 5.08839 5.15093 5.17985 5.19800 5.30614 5.52473 5.56859 5.61202 5.66998 5.74381 5.85759 6.26495 6.39079 6.84417 7.18671 7.37980 8.90977 Molecular weight = 265.18amu Principal moments of inertia in cm(-1) A = 0.046985 B = 0.003250 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.789607 B = 8613.818941 C = 8939.366572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.050 0.950 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.127 4.127 12 C 0.513 3.487 13 O -0.588 6.588 14 N -0.609 5.609 15 C 0.101 3.899 16 C -0.117 4.117 17 C -0.084 4.084 18 C -0.131 4.131 19 C -0.138 4.138 20 C -0.128 4.128 21 C -0.102 4.102 22 C 0.109 3.891 23 H 0.265 0.735 24 H 0.002 0.998 25 H 0.001 0.999 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.052 0.948 42 H 0.082 0.918 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.169 -26.131 1.640 26.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.068 0.932 9 C -0.009 4.009 10 C -0.120 4.120 11 C -0.167 4.167 12 C 0.303 3.697 13 O -0.468 6.468 14 N -0.342 5.342 15 C -0.021 4.021 16 C -0.155 4.155 17 C -0.084 4.084 18 C -0.168 4.168 19 C -0.175 4.175 20 C -0.165 4.165 21 C -0.140 4.140 22 C -0.013 4.013 23 H 0.074 0.926 24 H 0.020 0.980 25 H 0.019 0.981 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.700 -25.924 1.638 26.032 hybrid contribution 0.456 1.158 0.080 1.247 sum -1.244 -24.767 1.718 24.857 Atomic orbital electron populations 1.70066 1.07467 1.27812 1.51532 1.25903 0.95845 1.03039 0.94642 0.85498 0.78613 0.78680 0.78577 1.19660 1.20190 1.19357 1.21687 0.93314 0.92847 1.50822 0.93168 1.19001 0.94127 0.92268 0.95536 1.21165 0.97640 0.93036 1.00132 1.21683 0.97958 0.91807 1.05244 1.21122 0.89262 0.84804 0.74559 1.90636 1.19059 1.85102 1.52049 1.48197 1.08523 1.04773 1.72707 1.21905 0.78815 1.01310 1.00085 1.21802 1.00398 0.95697 0.97636 1.21556 0.94243 0.93968 0.98681 1.22944 1.01896 0.95387 0.96579 1.22825 1.01857 0.96756 0.96092 1.22957 1.02146 0.95102 0.96320 1.21610 0.95777 0.99358 0.97297 1.21612 0.93309 0.86920 0.99456 0.92618 0.97999 0.98052 0.94327 0.94189 0.87746 0.87548 0.88964 0.89492 0.88393 0.92590 0.91996 0.89319 0.90869 0.90188 0.89118 0.91608 0.89180 0.92916 0.90028 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.96 45.63 29.54 68.60 2.03 47.66 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.55 -32.80 9.11 25.60 0.23 -32.57 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 9 C 0.03 1.50 4.97 29.85 0.15 1.65 16 10 C -0.08 -3.72 4.44 30.59 0.14 -3.59 16 11 C -0.13 -4.37 4.04 29.85 0.12 -4.25 16 12 C 0.51 17.53 7.69 87.66 0.67 18.21 16 13 O -0.59 -25.23 15.37 -3.02 -0.05 -25.28 16 14 N -0.61 -15.29 2.95 -819.64 -2.42 -17.71 16 15 C 0.10 1.79 6.18 86.25 0.53 2.33 16 16 C -0.12 -1.74 5.23 30.46 0.16 -1.58 16 17 C -0.08 -1.16 0.76 -52.07 -0.04 -1.20 16 18 C -0.13 -1.54 7.23 31.01 0.22 -1.31 16 19 C -0.14 -1.40 7.73 31.16 0.24 -1.16 16 20 C -0.13 -1.41 6.86 31.02 0.21 -1.19 16 21 C -0.10 -1.75 5.20 30.61 0.16 -1.59 16 22 C 0.11 2.39 6.29 86.40 0.54 2.93 16 23 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 24 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 25 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 26 H 0.04 1.84 8.10 -2.39 -0.02 1.83 16 27 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 28 H 0.10 3.21 7.71 -2.39 -0.02 3.20 16 29 H 0.11 3.24 7.91 -2.39 -0.02 3.22 16 30 H 0.09 1.65 5.89 -2.39 -0.01 1.63 16 31 H 0.09 1.26 8.05 -2.39 -0.02 1.24 16 32 H 0.10 1.06 8.12 -2.39 -0.02 1.04 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 0.79 8.09 -2.39 -0.02 0.77 16 35 H 0.09 0.93 8.09 -2.39 -0.02 0.91 16 36 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.08 0.80 7.61 -2.39 -0.02 0.78 16 38 H 0.09 0.86 8.08 -2.39 -0.02 0.84 16 39 H 0.07 0.76 7.33 -2.39 -0.02 0.74 16 40 H 0.09 1.25 7.31 -2.39 -0.02 1.23 16 41 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.08 1.49 7.41 -2.39 -0.02 1.47 16 43 H 0.07 1.83 6.98 -2.39 -0.02 1.81 16 Total: -1.00 -71.73 335.19 4.61 -67.12 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 0.96 Total: 7.30 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 3.81 Total: -22.65 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -2.13 Total: -74.15 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.05 Total: -25.28 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -71.73 4.61 -67.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594027373.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.690 kcal (2) G-P(sol) polarization free energy of solvation -71.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds